HEADER SIGNALING PROTEIN 30-JUN-09 3I3S TITLE CRYSTAL STRUCTURE OF H-RAS WITH THR50 REPLACED BY ISOLEUCINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: R; COMPND 4 FRAGMENT: UNP RESIDUES 1-166; COMPND 5 SYNONYM: TRANSFORMING PROTEIN P21, P21RAS, H-RAS-1, C-H-RAS, HA-RAS, COMPND 6 GTPASE HRAS, N-TERMINALLY PROCESSED; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS GTPASES, H-RAS, NOONAN SYNDROME, CELL MEMBRANE, DISEASE MUTATION, KEYWDS 2 GOLGI APPARATUS, GTP-BINDING, LIPOPROTEIN, MEMBRANE, METHYLATION, KEYWDS 3 NUCLEOTIDE-BINDING, PALMITATE, PRENYLATION, PROTO-ONCOGENE, S- KEYWDS 4 NITROSYLATION, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.GREMER,R.DVORSKY,T.MERBITZ-ZAHRADNIK,A.WITTINGHOFER,M.R.AHMADIAN REVDAT 4 06-SEP-23 3I3S 1 REMARK REVDAT 3 13-OCT-21 3I3S 1 REMARK SEQADV LINK REVDAT 2 12-JAN-11 3I3S 1 JRNL REVDAT 1 22-DEC-09 3I3S 0 JRNL AUTH I.C.CIRSTEA,K.KUTSCHE,R.DVORSKY,L.GREMER,C.CARTA,D.HORN, JRNL AUTH 2 A.E.ROBERTS,F.LEPRI,T.MERBITZ-ZAHRADNIK,R.KONIG,C.P.KRATZ, JRNL AUTH 3 F.PANTALEONI,M.L.DENTICI,V.A.JOSHI,R.S.KUCHERLAPATI, JRNL AUTH 4 L.MAZZANTI,S.MUNDLOS,M.A.PATTON,M.C.SILENGO,C.ROSSI, JRNL AUTH 5 G.ZAMPINO,C.DIGILIO,L.STUPPIA,E.SEEMANOVA,L.A.PENNACCHIO, JRNL AUTH 6 B.D.GELB,B.DALLAPICCOLA,A.WITTINGHOFER,M.R.AHMADIAN, JRNL AUTH 7 M.TARTAGLIA,M.ZENKER JRNL TITL A RESTRICTED SPECTRUM OF NRAS MUTATIONS CAUSES NOONAN JRNL TITL 2 SYNDROME. JRNL REF NAT.GENET. V. 42 27 2010 JRNL REFN ISSN 1061-4036 JRNL PMID 19966803 JRNL DOI 10.1038/NG.497 REMARK 2 REMARK 2 RESOLUTION. 1.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44353 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2218 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.40 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3113 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1610 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.2010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1320 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 102 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : -0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.055 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.050 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.026 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.375 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1639 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1105 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2254 ; 1.539 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2710 ; 0.939 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 217 ; 5.693 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;39.980 ;24.396 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 299 ;12.332 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;21.962 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 246 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1885 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 338 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 318 ; 0.282 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1130 ; 0.215 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 742 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 838 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 80 ; 0.201 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.050 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.567 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 47 ; 0.247 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.419 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.056 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1013 ; 1.311 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 390 ; 0.478 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1575 ; 1.874 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 737 ; 2.426 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 661 ; 3.289 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3028 ; 1.225 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 106 ; 6.412 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2696 ; 2.498 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : R 1 R 166 REMARK 3 RESIDUE RANGE : R 1 R 168 REMARK 3 RESIDUE RANGE : R 1 R 171 REMARK 3 RESIDUE RANGE : R 1 R 273 REMARK 3 ORIGIN FOR THE GROUP (A): -2.7361 -21.1472 -31.6570 REMARK 3 T TENSOR REMARK 3 T11: -0.0302 T22: -0.0109 REMARK 3 T33: -0.0354 T12: -0.0097 REMARK 3 T13: -0.0106 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.7606 L22: 1.1527 REMARK 3 L33: 0.5163 L12: -0.1971 REMARK 3 L13: -0.2665 L23: 0.0608 REMARK 3 S TENSOR REMARK 3 S11: 0.0489 S12: -0.0531 S13: -0.0088 REMARK 3 S21: 0.0156 S22: -0.0461 S23: -0.0728 REMARK 3 S31: 0.0199 S32: -0.0065 S33: -0.0028 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3I3S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000053927. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9998 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44357 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.360 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.29500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 5P21 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 6000, 200 MM CACL2, PH 7.5, REMARK 280 HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 44.60500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 25.75271 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 44.88000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 44.60500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 25.75271 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.88000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 44.60500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 25.75271 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.88000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 44.60500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 25.75271 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.88000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 44.60500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 25.75271 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 44.88000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 44.60500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 25.75271 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.88000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.50542 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 89.76000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 51.50542 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 89.76000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 51.50542 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 89.76000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 51.50542 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.76000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 51.50542 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 89.76000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 51.50542 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 89.76000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -227.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -44.60500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -77.25813 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 44.60500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -77.25813 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 44.60500 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 -25.75271 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -44.88000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 -103.01084 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -44.88000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 -44.60500 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 -25.75271 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -44.88000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 44.60500 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 -25.75271 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -44.88000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -44.60500 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 -25.75271 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -44.88000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG R 170 LIES ON A SPECIAL POSITION. REMARK 375 MG MG R 171 LIES ON A SPECIAL POSITION. REMARK 375 HOH R 260 LIES ON A SPECIAL POSITION. REMARK 375 HOH R 271 LIES ON A SPECIAL POSITION. REMARK 375 HOH R 273 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET R 67 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH R 248 O HOH R 255 1.80 REMARK 500 OE2 GLU R 3 OD2 ASP R 54 1.96 REMARK 500 O HOH R 201 O HOH R 255 2.16 REMARK 500 OD1 ASP R 92 O HOH R 247 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD GLN R 165 O HOH R 207 11444 1.39 REMARK 500 OE1 GLN R 165 O HOH R 207 11444 1.73 REMARK 500 NE2 GLN R 165 O HOH R 207 11444 1.76 REMARK 500 O HOH R 246 O HOH R 265 11444 1.89 REMARK 500 NE2 HIS R 94 O HOH R 257 2555 1.93 REMARK 500 CE1 HIS R 94 O HOH R 257 2555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS R 51 CB CYS R 51 SG -0.138 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE R 36 -78.49 -91.52 REMARK 500 LYS R 117 34.59 71.02 REMARK 500 ARG R 149 -4.65 81.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG R 168 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER R 17 OG REMARK 620 2 THR R 35 OG1 82.7 REMARK 620 3 GNP R 167 O2G 172.6 90.1 REMARK 620 4 GNP R 167 O2B 91.5 173.5 95.8 REMARK 620 5 HOH R 172 O 86.2 91.3 92.6 91.2 REMARK 620 6 HOH R 173 O 89.4 89.3 92.0 87.8 175.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG R 171 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG R 102 O REMARK 620 2 ARG R 102 O 12.8 REMARK 620 3 ASP R 105 OD1 107.5 96.4 REMARK 620 4 ASP R 105 OD2 102.4 91.3 58.0 REMARK 620 5 HOH R 271 O 84.6 89.0 82.1 139.9 REMARK 620 6 HOH R 273 O 91.6 86.3 94.9 36.9 174.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG R 170 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH R 218 O REMARK 620 2 HOH R 234 O 79.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP R 167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG R 168 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA R 169 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG R 170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG R 171 DBREF 3I3S R 1 166 UNP P01112 RASH_HUMAN 1 166 SEQADV 3I3S ILE R 50 UNP P01112 THR 50 ENGINEERED MUTATION SEQRES 1 R 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 R 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 R 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 R 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU ILE CYS LEU SEQRES 5 R 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 R 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 R 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 R 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 R 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 R 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 R 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 R 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 R 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS HET GNP R 167 32 HET MG R 168 1 HET CA R 169 1 HET MG R 170 1 HET MG R 171 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM CA CALCIUM ION FORMUL 2 GNP C10 H17 N6 O13 P3 FORMUL 3 MG 3(MG 2+) FORMUL 4 CA CA 2+ FORMUL 7 HOH *102(H2 O) HELIX 1 1 GLY R 15 ASN R 26 1 12 HELIX 2 2 GLN R 61 SER R 65 5 5 HELIX 3 4 ASN R 86 ASP R 92 1 7 HELIX 4 5 ASP R 92 ASP R 105 1 14 HELIX 5 6 GLU R 126 GLY R 138 1 13 HELIX 6 7 GLY R 151 HIS R 166 1 16 SHEET 1 A 6 GLU R 37 ILE R 46 0 SHEET 2 A 6 GLU R 49 THR R 58 -1 O ASP R 57 N ASP R 38 SHEET 3 A 6 THR R 2 GLY R 10 1 N LEU R 6 O ASP R 54 SHEET 4 A 6 GLY R 77 ALA R 83 1 O VAL R 81 N VAL R 9 SHEET 5 A 6 MET R 111 ASN R 116 1 O ASN R 116 N PHE R 82 SHEET 6 A 6 TYR R 141 GLU R 143 1 O ILE R 142 N LEU R 113 LINK OG SER R 17 MG MG R 168 1555 1555 2.10 LINK OG1 THR R 35 MG MG R 168 1555 1555 2.10 LINK O AARG R 102 MG MG R 171 1555 1555 2.17 LINK O BARG R 102 MG MG R 171 1555 1555 2.23 LINK OD1AASP R 105 MG MG R 171 1555 1555 1.99 LINK OD2AASP R 105 MG MG R 171 1555 1555 2.46 LINK O2G GNP R 167 MG MG R 168 1555 1555 2.00 LINK O2B GNP R 167 MG MG R 168 1555 1555 2.08 LINK MG MG R 168 O HOH R 172 1555 1555 2.07 LINK MG MG R 168 O HOH R 173 1555 1555 2.12 LINK MG MG R 170 O HOH R 218 1555 1555 2.38 LINK MG MG R 170 O HOH R 234 1555 1555 1.97 LINK MG MG R 171 O HOH R 271 1555 1555 1.77 LINK MG MG R 171 O HOH R 273 1555 1555 2.28 SITE 1 AC1 29 GLY R 12 GLY R 13 VAL R 14 GLY R 15 SITE 2 AC1 29 LYS R 16 SER R 17 ALA R 18 PHE R 28 SITE 3 AC1 29 VAL R 29 ASP R 30 GLU R 31 TYR R 32 SITE 4 AC1 29 PRO R 34 THR R 35 GLY R 60 ASN R 116 SITE 5 AC1 29 LYS R 117 ASP R 119 LEU R 120 SER R 145 SITE 6 AC1 29 ALA R 146 LYS R 147 MG R 168 HOH R 172 SITE 7 AC1 29 HOH R 173 HOH R 176 HOH R 182 HOH R 184 SITE 8 AC1 29 HOH R 193 SITE 1 AC2 5 SER R 17 THR R 35 GNP R 167 HOH R 172 SITE 2 AC2 5 HOH R 173 SITE 1 AC3 6 PHE R 28 ASP R 30 GLU R 31 ASP R 33 SITE 2 AC3 6 HOH R 190 HOH R 208 SITE 1 AC4 2 HOH R 218 HOH R 234 SITE 1 AC5 4 ARG R 102 ASP R 105 HOH R 271 HOH R 273 CRYST1 89.210 89.210 134.640 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011210 0.006472 0.000000 0.00000 SCALE2 0.000000 0.012944 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007427 0.00000