HEADER OXIDOREDUCTASE 01-JUL-09 3I44 TITLE CRYSTAL STRUCTURE OF ALDEHYDE DEHYDROGENASE FROM BARTONELLA HENSELAE TITLE 2 AT 2.0A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDEHYDE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BARTONELLA HENSELAE; SOURCE 3 ORGANISM_COMMON: ROCHALIMAEA HENSELAE; SOURCE 4 ORGANISM_TAXID: 38323; SOURCE 5 STRAIN: HOUSTON-1; SOURCE 6 GENE: ALDA, BH03830; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS BARTONELLA HENSELAE, ALDEHYDE DEHYDROGENASE, OXIDOREDUCTASE, KEYWDS 2 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 06-SEP-23 3I44 1 REMARK REVDAT 2 13-OCT-21 3I44 1 REMARK SEQADV LINK REVDAT 1 14-JUL-09 3I44 0 JRNL AUTH J.ABENDROTH,B.STAKER JRNL TITL CRYSTAL STRUCTURE OF ALDEHYDE DEHYDROGENASE FROM BARTONELLA JRNL TITL 2 HENSELAE AT 2.0A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 37261 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1861 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2583 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 152 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3612 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 276 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.65000 REMARK 3 B22 (A**2) : -1.05000 REMARK 3 B33 (A**2) : 2.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.158 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.740 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3729 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2482 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5070 ; 1.371 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6079 ; 0.912 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 488 ; 5.950 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;36.677 ;24.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 614 ;13.609 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.139 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 567 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4230 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 739 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2379 ; 0.721 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 980 ; 0.195 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3818 ; 1.318 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1350 ; 2.343 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1245 ; 3.850 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3I44 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000053939. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03322 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37273 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.56100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1BI9 MODIFIED BY CCP4 PROGRAM CHAINSAW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: JCSG+ SCREEN #70: 1.1M NAMALONATE, REMARK 280 0.5% JEFFAMINE, 100MM HEPES, PH 7.5, BAHEA.00886.A AT 49.8 MG/ML, REMARK 280 MICROFLUDIC MICROBATCH IN A CRYSTAL CARD, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.65500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.65500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 84.10000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 84.10000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.65500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 84.10000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 34.65500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 47.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 84.10000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 94.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 34.65500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 42 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 ARG A 230 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 GLN A 268 CG CD OE1 NE2 REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 GLU A 328 CG CD OE1 OE2 REMARK 470 GLU A 359 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 20 UNK UNX A 478 1.85 REMARK 500 O HOH A 718 O HOH A 719 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 380 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 20 84.66 -151.44 REMARK 500 ALA A 102 -59.24 -130.51 REMARK 500 ALA A 179 60.63 -150.22 REMARK 500 ASN A 209 -77.09 -100.81 REMARK 500 LEU A 250 -159.78 -114.72 REMARK 500 GLN A 280 58.31 -95.82 REMARK 500 LEU A 410 -85.47 -92.71 REMARK 500 LYS A 451 -128.86 51.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 477 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 25 O REMARK 620 2 GLU A 91 O 87.5 REMARK 620 3 ILE A 178 O 157.9 97.9 REMARK 620 4 HOH A 694 O 91.8 175.5 81.2 REMARK 620 5 HOH A 723 O 88.2 110.4 109.6 73.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 477 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BAHEA.00886.A RELATED DB: TARGETDB DBREF 3I44 A 1 476 UNP Q6G4G1 Q6G4G1_BARHE 1 476 SEQADV 3I44 MET A -20 UNP Q6G4G1 EXPRESSION TAG SEQADV 3I44 ALA A -19 UNP Q6G4G1 EXPRESSION TAG SEQADV 3I44 HIS A -18 UNP Q6G4G1 EXPRESSION TAG SEQADV 3I44 HIS A -17 UNP Q6G4G1 EXPRESSION TAG SEQADV 3I44 HIS A -16 UNP Q6G4G1 EXPRESSION TAG SEQADV 3I44 HIS A -15 UNP Q6G4G1 EXPRESSION TAG SEQADV 3I44 HIS A -14 UNP Q6G4G1 EXPRESSION TAG SEQADV 3I44 HIS A -13 UNP Q6G4G1 EXPRESSION TAG SEQADV 3I44 MET A -12 UNP Q6G4G1 EXPRESSION TAG SEQADV 3I44 GLY A -11 UNP Q6G4G1 EXPRESSION TAG SEQADV 3I44 THR A -10 UNP Q6G4G1 EXPRESSION TAG SEQADV 3I44 LEU A -9 UNP Q6G4G1 EXPRESSION TAG SEQADV 3I44 GLU A -8 UNP Q6G4G1 EXPRESSION TAG SEQADV 3I44 ALA A -7 UNP Q6G4G1 EXPRESSION TAG SEQADV 3I44 GLN A -6 UNP Q6G4G1 EXPRESSION TAG SEQADV 3I44 THR A -5 UNP Q6G4G1 EXPRESSION TAG SEQADV 3I44 GLN A -4 UNP Q6G4G1 EXPRESSION TAG SEQADV 3I44 GLY A -3 UNP Q6G4G1 EXPRESSION TAG SEQADV 3I44 PRO A -2 UNP Q6G4G1 EXPRESSION TAG SEQADV 3I44 GLY A -1 UNP Q6G4G1 EXPRESSION TAG SEQADV 3I44 SER A 0 UNP Q6G4G1 EXPRESSION TAG SEQADV 3I44 GLU A 221 UNP Q6G4G1 GLY 221 ENGINEERED MUTATION SEQRES 1 A 497 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 497 ALA GLN THR GLN GLY PRO GLY SER MET LEU ASN LYS ARG SEQRES 3 A 497 LYS PHE TYR ILE ASN GLY LEU TRP ASP ASP PRO SER THR SEQRES 4 A 497 PRO HIS ASP LEU TYR VAL ILE ASP PRO SER THR GLU GLU SEQRES 5 A 497 ALA CYS ALA VAL ILE SER LEU GLY SER THR ARG ASP ALA SEQRES 6 A 497 ASP LYS ALA ILE ASN ALA ALA LYS LYS ALA PHE GLN THR SEQRES 7 A 497 TRP LYS THR THR SER PRO HIS GLU ARG LEU GLY PHE VAL SEQRES 8 A 497 GLU LYS ILE LEU GLU ILE TYR GLU LYS ARG SER SER ASP SEQRES 9 A 497 MET ALA LYS THR ILE SER MET GLU MET GLY ALA PRO ILE SEQRES 10 A 497 ASP MET ALA LEU ASN ALA GLN THR ALA THR GLY SER SER SEQRES 11 A 497 HIS ILE ARG ASN PHE ILE LYS ALA TYR LYS GLU PHE SER SEQRES 12 A 497 PHE GLN GLU ALA LEU ILE GLU GLY ASN GLU GLN ALA ILE SEQRES 13 A 497 LEU HIS TYR ASP ALA ILE GLY VAL VAL GLY LEU ILE THR SEQRES 14 A 497 PRO TRP ASN TRP PRO MET ASN GLN VAL THR LEU LYS VAL SEQRES 15 A 497 ILE PRO ALA LEU LEU ALA GLY CYS THR MET VAL LEU LYS SEQRES 16 A 497 PRO SER GLU ILE ALA PRO LEU SER ALA MET LEU PHE ALA SEQRES 17 A 497 GLU ILE LEU ASP GLU ALA ALA LEU PRO SER GLY VAL PHE SEQRES 18 A 497 ASN LEU ILE ASN GLY ASP GLY ALA ASN VAL GLY SER TYR SEQRES 19 A 497 LEU SER ALA HIS PRO ASP LEU GLU MET ILE SER PHE THR SEQRES 20 A 497 GLY SER THR ARG ALA GLY LYS ASP ILE SER LYS ASN ALA SEQRES 21 A 497 SER ASN THR LEU LYS ARG VAL CYS LEU GLU LEU GLY GLY SEQRES 22 A 497 LYS GLY ALA ASN ILE ILE PHE ALA ASP ALA ASP ILE ASP SEQRES 23 A 497 ALA LEU GLN ARG GLY VAL ARG HIS CYS PHE TYR ASN SER SEQRES 24 A 497 GLY GLN SER CYS ASN ALA PRO THR ARG MET LEU VAL GLU SEQRES 25 A 497 GLN ALA ILE TYR ASP LYS ALA ILE LYS THR ALA LYS ASP SEQRES 26 A 497 ILE ALA GLU LYS THR GLN VAL GLY PRO GLY HIS GLN THR SEQRES 27 A 497 GLY ASN HIS ILE GLY PRO VAL VAL SER LYS GLU GLN TYR SEQRES 28 A 497 ASP LYS ILE GLN ASP LEU ILE GLN SER GLY ILE ASP GLU SEQRES 29 A 497 GLY ALA THR LEU VAL THR GLY GLY THR GLY LEU PRO MET SEQRES 30 A 497 GLY MET GLU ARG GLY TYR TYR VAL ARG PRO THR VAL PHE SEQRES 31 A 497 ALA ASP VAL LYS PRO HIS MET ARG ILE PHE ARG GLU GLU SEQRES 32 A 497 ILE PHE GLY PRO VAL LEU SER LEU LEU PRO PHE ASN THR SEQRES 33 A 497 GLU ASP GLU ALA VAL THR LEU ALA ASN ASP THR GLU TYR SEQRES 34 A 497 GLY LEU THR ASN TYR ILE GLN SER GLN ASP ARG SER LYS SEQRES 35 A 497 CYS ARG ARG ILE ALA ALA GLN VAL ARG SER GLY MET VAL SEQRES 36 A 497 GLU VAL ASN GLY HIS GLU LEU PRO GLY GLY SER TYR PHE SEQRES 37 A 497 GLY GLY VAL LYS PHE SER GLY ARG ALA ARG GLU GLY GLY SEQRES 38 A 497 LEU TRP GLY ILE LYS GLU PHE LEU ASP THR LYS ALA ILE SEQRES 39 A 497 SER TYR TRP HET NA A 477 1 HET UNX A 478 1 HET UNX A 479 1 HETNAM NA SODIUM ION HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 NA NA 1+ FORMUL 3 UNX 2(X) FORMUL 5 HOH *276(H2 O) HELIX 1 1 SER A 40 LYS A 59 1 20 HELIX 2 2 SER A 62 ARG A 80 1 19 HELIX 3 3 ARG A 80 GLY A 93 1 14 HELIX 4 4 PRO A 95 ALA A 102 1 8 HELIX 5 5 ALA A 102 PHE A 121 1 20 HELIX 6 6 TRP A 152 GLY A 168 1 17 HELIX 7 7 PRO A 180 ALA A 193 1 14 HELIX 8 8 ASN A 209 HIS A 217 1 9 HELIX 9 9 SER A 228 ASN A 241 1 14 HELIX 10 10 ASP A 265 TYR A 276 1 12 HELIX 11 11 ASN A 277 GLN A 280 5 4 HELIX 12 12 ILE A 294 THR A 309 1 16 HELIX 13 13 SER A 326 GLU A 343 1 18 HELIX 14 14 MET A 376 GLU A 381 1 6 HELIX 15 15 THR A 395 ASP A 405 1 11 HELIX 16 16 ASP A 418 VAL A 429 1 12 HELIX 17 17 VAL A 450 GLY A 454 5 5 HELIX 18 18 GLY A 459 GLU A 466 1 8 SHEET 1 A 3 LEU A 2 LYS A 4 0 SHEET 2 A 3 ALA A 32 SER A 37 1 O VAL A 35 N LEU A 2 SHEET 3 A 3 ASP A 21 ILE A 25 -1 N VAL A 24 O CYS A 33 SHEET 1 B 2 PHE A 7 ILE A 9 0 SHEET 2 B 2 LEU A 12 ASP A 14 -1 O ASP A 14 N PHE A 7 SHEET 1 C 3 GLN A 124 ALA A 126 0 SHEET 2 C 3 ILE A 135 ALA A 140 -1 O LEU A 136 N GLU A 125 SHEET 3 C 3 LEU A 468 ILE A 473 -1 O ILE A 473 N ILE A 135 SHEET 1 D 5 PHE A 200 LEU A 202 0 SHEET 2 D 5 THR A 170 LYS A 174 1 N LEU A 173 O ASN A 201 SHEET 3 D 5 VAL A 143 ILE A 147 1 N LEU A 146 O VAL A 172 SHEET 4 D 5 MET A 222 THR A 226 1 O SER A 224 N GLY A 145 SHEET 5 D 5 ARG A 245 GLU A 249 1 O CYS A 247 N PHE A 225 SHEET 1 E 7 THR A 346 THR A 349 0 SHEET 2 E 7 THR A 367 ALA A 370 -1 O VAL A 368 N VAL A 348 SHEET 3 E 7 VAL A 387 PHE A 393 1 O LEU A 390 N PHE A 369 SHEET 4 E 7 ARG A 287 GLU A 291 1 N MET A 288 O SER A 389 SHEET 5 E 7 ALA A 255 ILE A 258 1 N ASN A 256 O ARG A 287 SHEET 6 E 7 THR A 411 GLN A 415 1 O GLN A 415 N ILE A 257 SHEET 7 E 7 MET A 433 VAL A 436 1 O GLU A 435 N ASN A 412 LINK O ILE A 25 NA NA A 477 1555 1555 2.50 LINK O GLU A 91 NA NA A 477 1555 1555 2.40 LINK O ILE A 178 NA NA A 477 1555 1555 2.32 LINK NA NA A 477 O HOH A 694 1555 1555 2.65 LINK NA NA A 477 O HOH A 723 1555 1555 2.03 SITE 1 AC1 5 ILE A 25 GLU A 91 ILE A 178 HOH A 694 SITE 2 AC1 5 HOH A 723 CRYST1 94.000 168.200 69.310 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010638 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005945 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014428 0.00000