HEADER HYDROLASE 01-JUL-09 3I4A TITLE CRYSTAL STRUCTURE OF DIMETHYLARGININE DIMETHYLAMINOHYDROLASE-1 (DDAH- TITLE 2 1) IN COMPLEX WITH N5-(1-IMINOPROPYL)-L-ORNITHINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: N(G),N(G)-DIMETHYLARGININE DIMETHYLAMINOHYDROLASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DIMETHYLARGININE DIMETHYLAMINOHYDROLASE 1, DDAH-1, DDAHI, COMPND 5 DIMETHYLARGININASE-1; COMPND 6 EC: 3.5.3.18; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDAH, DDAH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A-HDDAH-1 KEYWDS DDAH, HYDROLASE, NITRIC OXIDE SYNTHASE REGULATION, METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.F.MONZINGO,Y.WANG,S.HU,T.H.SCHALLER,W.FAST,J.D.ROBERTUS REVDAT 5 06-SEP-23 3I4A 1 REMARK SEQADV LINK REVDAT 4 01-NOV-17 3I4A 1 REMARK REVDAT 3 16-JUL-14 3I4A 1 MTRIX1 MTRIX2 MTRIX3 VERSN REVDAT 2 06-OCT-09 3I4A 1 JRNL REVDAT 1 25-AUG-09 3I4A 0 JRNL AUTH Y.WANG,A.F.MONZINGO,S.HU,T.H.SCHALLER,J.D.ROBERTUS,W.FAST JRNL TITL DEVELOPING DUAL AND SPECIFIC INHIBITORS OF DIMETHYLARGININE JRNL TITL 2 DIMETHYLAMINOHYDROLASE-1 AND NITRIC OXIDE SYNTHASE: TOWARD A JRNL TITL 3 TARGETED POLYPHARMACOLOGY TO CONTROL NITRIC OXIDE. JRNL REF BIOCHEMISTRY V. 48 8624 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19663506 JRNL DOI 10.1021/BI9007098 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 40594 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.1220 - 5.1380 0.98 2141 97 0.1420 0.1970 REMARK 3 2 5.1380 - 4.0840 0.98 2110 110 0.1150 0.1570 REMARK 3 3 4.0840 - 3.5690 0.98 1959 102 0.1250 0.2020 REMARK 3 4 3.5690 - 3.2430 0.98 2082 103 0.1480 0.2240 REMARK 3 5 3.2430 - 3.0110 0.98 2061 100 0.1680 0.2400 REMARK 3 6 3.0110 - 2.8340 0.98 2011 108 0.1750 0.2680 REMARK 3 7 2.8340 - 2.6920 0.98 2059 110 0.1930 0.2740 REMARK 3 8 2.6920 - 2.5750 0.98 2029 98 0.1980 0.2360 REMARK 3 9 2.5750 - 2.4760 0.98 2018 90 0.1960 0.2460 REMARK 3 10 2.4760 - 2.3910 0.98 1951 114 0.2020 0.3540 REMARK 3 11 2.3910 - 2.3160 0.98 1980 91 0.2050 0.2280 REMARK 3 12 2.3160 - 2.2500 0.98 1691 102 0.2520 0.3810 REMARK 3 13 2.2500 - 2.1910 0.98 1668 64 0.2950 0.4890 REMARK 3 14 2.1910 - 2.1370 0.98 1922 102 0.2230 0.3560 REMARK 3 15 2.1370 - 2.0890 0.98 1926 107 0.2200 0.2840 REMARK 3 16 2.0890 - 2.0440 0.98 1924 85 0.2250 0.2920 REMARK 3 17 2.0440 - 2.0030 0.98 1919 93 0.2460 0.3090 REMARK 3 18 2.0030 - 1.9660 0.98 1889 98 0.2450 0.3100 REMARK 3 19 1.9660 - 1.9310 0.98 1653 76 0.2870 0.3600 REMARK 3 20 1.9310 - 1.8980 0.98 1659 92 0.3530 0.3830 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 29.55 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.69200 REMARK 3 B22 (A**2) : 5.59900 REMARK 3 B33 (A**2) : -2.90700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.4860 REMARK 3 OPERATOR: H,-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4270 REMARK 3 ANGLE : 1.110 5782 REMARK 3 CHIRALITY : 0.068 678 REMARK 3 PLANARITY : 0.005 754 REMARK 3 DIHEDRAL : 19.683 1602 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C OR (CHAIN A AND RESID 274) REMARK 3 SELECTION : CHAIN D OR (CHAIN B AND RESID 274) REMARK 3 ATOM PAIRS NUMBER : 19 REMARK 3 RMSD : 0.036 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DETWINNING ALGORITHM USED DURING REMARK 3 REFINEMENT REMARK 4 REMARK 4 3I4A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000053945. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : VARIMAX HIGH FLUX OPTICS REMARK 200 OPTICS : VARIMAX HIGH FLUX OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42222 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.898 REMARK 200 RESOLUTION RANGE LOW (A) : 25.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.39100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3I2E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) PEG 6000, 0.1 M TRIS-HCL, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.06500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 SER A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 GLY A -10 REMARK 465 LEU A -9 REMARK 465 VAL A -8 REMARK 465 PRO A -7 REMARK 465 ARG A -6 REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 LEU A 4 REMARK 465 GLY A 5 REMARK 465 HIS A 6 REMARK 465 PRO A 7 REMARK 465 VAL A 283 REMARK 465 ASP A 284 REMARK 465 SER A 285 REMARK 465 MET B -22 REMARK 465 GLY B -21 REMARK 465 SER B -20 REMARK 465 SER B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 SER B -12 REMARK 465 SER B -11 REMARK 465 GLY B -10 REMARK 465 LEU B -9 REMARK 465 VAL B -8 REMARK 465 PRO B -7 REMARK 465 ARG B -6 REMARK 465 GLY B -5 REMARK 465 SER B -4 REMARK 465 HIS B -3 REMARK 465 MET B -2 REMARK 465 ALA B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 LEU B 4 REMARK 465 GLY B 5 REMARK 465 HIS B 6 REMARK 465 PRO B 7 REMARK 465 VAL B 283 REMARK 465 ASP B 284 REMARK 465 SER B 285 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 ASP A 170 CG OD1 OD2 REMARK 470 GLU A 192 CG CD OE1 OE2 REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 LYS B 34 CG CD CE NZ REMARK 470 LYS B 111 CG CD CE NZ REMARK 470 ASP B 170 CG OD1 OD2 REMARK 470 GLU B 192 CG CD OE1 OE2 REMARK 470 LYS B 196 CG CD CE NZ REMARK 470 LYS B 282 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 228 CA - N - CD ANGL. DEV. = -18.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 85 -113.77 57.72 REMARK 500 PRO A 93 153.50 -48.21 REMARK 500 ASP A 121 100.53 -42.71 REMARK 500 PHE A 158 64.56 -116.05 REMARK 500 ASP A 170 -139.26 43.11 REMARK 500 PRO A 183 107.44 -58.73 REMARK 500 ASN A 229 -5.20 65.89 REMARK 500 LEU A 252 92.67 -65.06 REMARK 500 MET A 262 35.22 -144.05 REMARK 500 LEU A 271 -169.13 -112.98 REMARK 500 ALA B 81 128.21 -171.08 REMARK 500 GLU B 85 -117.29 58.97 REMARK 500 ASP B 121 125.93 -37.78 REMARK 500 ARG B 136 19.39 -152.40 REMARK 500 GLU B 137 150.44 173.45 REMARK 500 ALA B 169 95.03 -69.97 REMARK 500 ASP B 170 -118.77 77.46 REMARK 500 PHE B 177 13.46 -141.73 REMARK 500 SER B 179 161.37 174.16 REMARK 500 ASN B 184 17.02 57.86 REMARK 500 LYS B 230 -53.54 -159.91 REMARK 500 ARG B 237 -179.85 -62.16 REMARK 500 LEU B 252 92.35 -62.85 REMARK 500 MET B 262 32.70 -145.00 REMARK 500 LEU B 271 -153.90 -119.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LN5 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LN5 B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I2E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN DIMETHYLARGININE DYMETHYLAMINOHYDROLASE- REMARK 900 1 (DDAH-1) REMARK 900 RELATED ID: 2JAI RELATED DB: PDB REMARK 900 DDAH1 COMPLEXED WITH CITRULLINE REMARK 900 RELATED ID: 2JAJ RELATED DB: PDB REMARK 900 DDAH1 COMPLEXED WITH L-257 DBREF 3I4A A 1 285 UNP O94760 DDAH1_HUMAN 1 285 DBREF 3I4A B 1 285 UNP O94760 DDAH1_HUMAN 1 285 SEQADV 3I4A MET A -22 UNP O94760 EXPRESSION TAG SEQADV 3I4A GLY A -21 UNP O94760 EXPRESSION TAG SEQADV 3I4A SER A -20 UNP O94760 EXPRESSION TAG SEQADV 3I4A SER A -19 UNP O94760 EXPRESSION TAG SEQADV 3I4A HIS A -18 UNP O94760 EXPRESSION TAG SEQADV 3I4A HIS A -17 UNP O94760 EXPRESSION TAG SEQADV 3I4A HIS A -16 UNP O94760 EXPRESSION TAG SEQADV 3I4A HIS A -15 UNP O94760 EXPRESSION TAG SEQADV 3I4A HIS A -14 UNP O94760 EXPRESSION TAG SEQADV 3I4A HIS A -13 UNP O94760 EXPRESSION TAG SEQADV 3I4A SER A -12 UNP O94760 EXPRESSION TAG SEQADV 3I4A SER A -11 UNP O94760 EXPRESSION TAG SEQADV 3I4A GLY A -10 UNP O94760 EXPRESSION TAG SEQADV 3I4A LEU A -9 UNP O94760 EXPRESSION TAG SEQADV 3I4A VAL A -8 UNP O94760 EXPRESSION TAG SEQADV 3I4A PRO A -7 UNP O94760 EXPRESSION TAG SEQADV 3I4A ARG A -6 UNP O94760 EXPRESSION TAG SEQADV 3I4A GLY A -5 UNP O94760 EXPRESSION TAG SEQADV 3I4A SER A -4 UNP O94760 EXPRESSION TAG SEQADV 3I4A HIS A -3 UNP O94760 EXPRESSION TAG SEQADV 3I4A MET A -2 UNP O94760 EXPRESSION TAG SEQADV 3I4A ALA A -1 UNP O94760 EXPRESSION TAG SEQADV 3I4A SER A 0 UNP O94760 EXPRESSION TAG SEQADV 3I4A MET B -22 UNP O94760 EXPRESSION TAG SEQADV 3I4A GLY B -21 UNP O94760 EXPRESSION TAG SEQADV 3I4A SER B -20 UNP O94760 EXPRESSION TAG SEQADV 3I4A SER B -19 UNP O94760 EXPRESSION TAG SEQADV 3I4A HIS B -18 UNP O94760 EXPRESSION TAG SEQADV 3I4A HIS B -17 UNP O94760 EXPRESSION TAG SEQADV 3I4A HIS B -16 UNP O94760 EXPRESSION TAG SEQADV 3I4A HIS B -15 UNP O94760 EXPRESSION TAG SEQADV 3I4A HIS B -14 UNP O94760 EXPRESSION TAG SEQADV 3I4A HIS B -13 UNP O94760 EXPRESSION TAG SEQADV 3I4A SER B -12 UNP O94760 EXPRESSION TAG SEQADV 3I4A SER B -11 UNP O94760 EXPRESSION TAG SEQADV 3I4A GLY B -10 UNP O94760 EXPRESSION TAG SEQADV 3I4A LEU B -9 UNP O94760 EXPRESSION TAG SEQADV 3I4A VAL B -8 UNP O94760 EXPRESSION TAG SEQADV 3I4A PRO B -7 UNP O94760 EXPRESSION TAG SEQADV 3I4A ARG B -6 UNP O94760 EXPRESSION TAG SEQADV 3I4A GLY B -5 UNP O94760 EXPRESSION TAG SEQADV 3I4A SER B -4 UNP O94760 EXPRESSION TAG SEQADV 3I4A HIS B -3 UNP O94760 EXPRESSION TAG SEQADV 3I4A MET B -2 UNP O94760 EXPRESSION TAG SEQADV 3I4A ALA B -1 UNP O94760 EXPRESSION TAG SEQADV 3I4A SER B 0 UNP O94760 EXPRESSION TAG SEQRES 1 A 308 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 308 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET ALA GLY SEQRES 3 A 308 LEU GLY HIS PRO ALA ALA PHE GLY ARG ALA THR HIS ALA SEQRES 4 A 308 VAL VAL ARG ALA LEU PRO GLU SER LEU GLY GLN HIS ALA SEQRES 5 A 308 LEU ARG SER ALA LYS GLY GLU GLU VAL ASP VAL ALA ARG SEQRES 6 A 308 ALA GLU ARG GLN HIS GLN LEU TYR VAL GLY VAL LEU GLY SEQRES 7 A 308 SER LYS LEU GLY LEU GLN VAL VAL GLU LEU PRO ALA ASP SEQRES 8 A 308 GLU SER LEU PRO ASP CYS VAL PHE VAL GLU ASP VAL ALA SEQRES 9 A 308 VAL VAL CYS GLU GLU THR ALA LEU ILE THR ARG PRO GLY SEQRES 10 A 308 ALA PRO SER ARG ARG LYS GLU VAL ASP MET MET LYS GLU SEQRES 11 A 308 ALA LEU GLU LYS LEU GLN LEU ASN ILE VAL GLU MET LYS SEQRES 12 A 308 ASP GLU ASN ALA THR LEU ASP GLY GLY ASP VAL LEU PHE SEQRES 13 A 308 THR GLY ARG GLU PHE PHE VAL GLY LEU SER LYS ARG THR SEQRES 14 A 308 ASN GLN ARG GLY ALA GLU ILE LEU ALA ASP THR PHE LYS SEQRES 15 A 308 ASP TYR ALA VAL SER THR VAL PRO VAL ALA ASP GLY LEU SEQRES 16 A 308 HIS LEU LYS SER PHE CYS SER MET ALA GLY PRO ASN LEU SEQRES 17 A 308 ILE ALA ILE GLY SER SER GLU SER ALA GLN LYS ALA LEU SEQRES 18 A 308 LYS ILE MET GLN GLN MET SER ASP HIS ARG TYR ASP LYS SEQRES 19 A 308 LEU THR VAL PRO ASP ASP ILE ALA ALA ASN CYS ILE TYR SEQRES 20 A 308 LEU ASN ILE PRO ASN LYS GLY HIS VAL LEU LEU HIS ARG SEQRES 21 A 308 THR PRO GLU GLU TYR PRO GLU SER ALA LYS VAL TYR GLU SEQRES 22 A 308 LYS LEU LYS ASP HIS MET LEU ILE PRO VAL SER MET SER SEQRES 23 A 308 GLU LEU GLU LYS VAL ASP GLY LEU LEU THR CYS CYS SER SEQRES 24 A 308 VAL LEU ILE ASN LYS LYS VAL ASP SER SEQRES 1 B 308 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 308 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET ALA GLY SEQRES 3 B 308 LEU GLY HIS PRO ALA ALA PHE GLY ARG ALA THR HIS ALA SEQRES 4 B 308 VAL VAL ARG ALA LEU PRO GLU SER LEU GLY GLN HIS ALA SEQRES 5 B 308 LEU ARG SER ALA LYS GLY GLU GLU VAL ASP VAL ALA ARG SEQRES 6 B 308 ALA GLU ARG GLN HIS GLN LEU TYR VAL GLY VAL LEU GLY SEQRES 7 B 308 SER LYS LEU GLY LEU GLN VAL VAL GLU LEU PRO ALA ASP SEQRES 8 B 308 GLU SER LEU PRO ASP CYS VAL PHE VAL GLU ASP VAL ALA SEQRES 9 B 308 VAL VAL CYS GLU GLU THR ALA LEU ILE THR ARG PRO GLY SEQRES 10 B 308 ALA PRO SER ARG ARG LYS GLU VAL ASP MET MET LYS GLU SEQRES 11 B 308 ALA LEU GLU LYS LEU GLN LEU ASN ILE VAL GLU MET LYS SEQRES 12 B 308 ASP GLU ASN ALA THR LEU ASP GLY GLY ASP VAL LEU PHE SEQRES 13 B 308 THR GLY ARG GLU PHE PHE VAL GLY LEU SER LYS ARG THR SEQRES 14 B 308 ASN GLN ARG GLY ALA GLU ILE LEU ALA ASP THR PHE LYS SEQRES 15 B 308 ASP TYR ALA VAL SER THR VAL PRO VAL ALA ASP GLY LEU SEQRES 16 B 308 HIS LEU LYS SER PHE CYS SER MET ALA GLY PRO ASN LEU SEQRES 17 B 308 ILE ALA ILE GLY SER SER GLU SER ALA GLN LYS ALA LEU SEQRES 18 B 308 LYS ILE MET GLN GLN MET SER ASP HIS ARG TYR ASP LYS SEQRES 19 B 308 LEU THR VAL PRO ASP ASP ILE ALA ALA ASN CYS ILE TYR SEQRES 20 B 308 LEU ASN ILE PRO ASN LYS GLY HIS VAL LEU LEU HIS ARG SEQRES 21 B 308 THR PRO GLU GLU TYR PRO GLU SER ALA LYS VAL TYR GLU SEQRES 22 B 308 LYS LEU LYS ASP HIS MET LEU ILE PRO VAL SER MET SER SEQRES 23 B 308 GLU LEU GLU LYS VAL ASP GLY LEU LEU THR CYS CYS SER SEQRES 24 B 308 VAL LEU ILE ASN LYS LYS VAL ASP SER MODRES 3I4A CYS A 274 CYS COVALENT MODRES 3I4A CYS B 274 CYS COVALENT HET LN5 A 500 13 HET LN5 B 500 13 HETNAM LN5 N5-(1-IMINOPROPYL)-L-ORNITHINE HETSYN LN5 (2S)-2-AZANYL-5-(PROPANIMIDOYLAMINO)PENTANOIC ACID FORMUL 3 LN5 2(C8 H17 N3 O2) FORMUL 5 HOH *99(H2 O) HELIX 1 1 SER A 24 ALA A 29 1 6 HELIX 2 2 ASP A 39 SER A 56 1 18 HELIX 3 3 PHE A 76 ASP A 79 5 4 HELIX 4 4 ALA A 95 LYS A 100 5 6 HELIX 5 5 GLU A 101 LYS A 111 1 11 HELIX 6 6 ASP A 127 GLY A 129 5 3 HELIX 7 7 ASN A 147 PHE A 158 1 12 HELIX 8 8 HIS A 173 SER A 176 5 4 HELIX 9 9 SER A 191 MET A 204 1 14 HELIX 10 10 ASP A 216 ASN A 221 5 6 HELIX 11 11 TYR A 242 LEU A 252 1 11 HELIX 12 12 MET A 262 LYS A 267 1 6 HELIX 13 13 LEU A 272 SER A 276 5 5 HELIX 14 14 SER B 24 ALA B 29 1 6 HELIX 15 15 ASP B 39 SER B 56 1 18 HELIX 16 16 PHE B 76 ASP B 79 5 4 HELIX 17 17 ALA B 95 LYS B 100 5 6 HELIX 18 18 GLU B 101 LYS B 111 1 11 HELIX 19 19 ASP B 127 GLY B 129 5 3 HELIX 20 20 ASN B 147 PHE B 158 1 12 HELIX 21 21 HIS B 173 SER B 176 5 4 HELIX 22 22 SER B 191 SER B 205 1 15 HELIX 23 23 ASP B 217 ASN B 221 5 5 HELIX 24 24 TYR B 242 GLU B 250 1 9 HELIX 25 25 GLU B 264 ASP B 269 5 6 HELIX 26 26 LEU B 272 SER B 276 5 5 SHEET 1 A 3 GLN A 61 LEU A 65 0 SHEET 2 A 3 HIS A 15 ARG A 19 1 N VAL A 18 O LEU A 65 SHEET 3 A 3 VAL A 277 ILE A 279 -1 O VAL A 277 N VAL A 17 SHEET 1 B 3 ALA A 81 CYS A 84 0 SHEET 2 B 3 THR A 87 ILE A 90 -1 O LEU A 89 N VAL A 82 SHEET 3 B 3 ASN A 115 GLU A 118 1 O ASN A 115 N ALA A 88 SHEET 1 C 3 VAL A 131 PHE A 133 0 SHEET 2 C 3 PHE A 138 LEU A 142 -1 O PHE A 139 N LEU A 132 SHEET 3 C 3 VAL A 163 PRO A 167 1 O SER A 164 N VAL A 140 SHEET 1 D 3 CYS A 178 GLY A 182 0 SHEET 2 D 3 LEU A 185 GLY A 189 -1 O ALA A 187 N SER A 179 SHEET 3 D 3 ASP A 210 VAL A 214 1 O LEU A 212 N ILE A 188 SHEET 1 E 3 ILE A 223 ILE A 227 0 SHEET 2 E 3 GLY A 231 ARG A 237 -1 O LEU A 235 N ILE A 223 SHEET 3 E 3 HIS A 255 VAL A 260 1 O VAL A 260 N HIS A 236 SHEET 1 F 3 GLN B 61 LEU B 65 0 SHEET 2 F 3 HIS B 15 ARG B 19 1 N VAL B 18 O VAL B 63 SHEET 3 F 3 VAL B 277 ILE B 279 -1 O ILE B 279 N HIS B 15 SHEET 1 G 3 ALA B 81 CYS B 84 0 SHEET 2 G 3 THR B 87 ILE B 90 -1 O THR B 87 N CYS B 84 SHEET 3 G 3 ASN B 115 GLU B 118 1 O VAL B 117 N ALA B 88 SHEET 1 H 3 VAL B 131 PHE B 133 0 SHEET 2 H 3 PHE B 138 LEU B 142 -1 O PHE B 139 N LEU B 132 SHEET 3 H 3 VAL B 163 PRO B 167 1 O SER B 164 N VAL B 140 SHEET 1 I 3 CYS B 178 GLY B 182 0 SHEET 2 I 3 LEU B 185 ILE B 188 -1 O ALA B 187 N SER B 179 SHEET 3 I 3 ASP B 210 THR B 213 1 O LEU B 212 N ILE B 188 SHEET 1 J 3 ILE B 223 ILE B 227 0 SHEET 2 J 3 GLY B 231 HIS B 236 -1 O VAL B 233 N LEU B 225 SHEET 3 J 3 MET B 256 PRO B 259 1 O MET B 256 N HIS B 232 LINK SG CYS A 274 CZ LN5 A 500 1555 1555 1.98 LINK SG CYS B 274 CZ LN5 B 500 1555 1555 1.99 SITE 1 AC1 12 LEU A 30 ASP A 73 PHE A 76 GLU A 78 SITE 2 AC1 12 ASP A 79 ARG A 98 GLY A 129 ARG A 145 SITE 3 AC1 12 HIS A 173 VAL A 268 ASP A 269 CYS A 274 SITE 1 AC2 12 LEU B 30 ASP B 73 PHE B 76 GLU B 78 SITE 2 AC2 12 ASP B 79 ARG B 98 GLY B 129 ARG B 145 SITE 3 AC2 12 HIS B 173 VAL B 268 ASP B 269 CYS B 274 CRYST1 47.600 80.130 73.900 90.00 90.13 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021008 0.000000 0.000048 0.00000 SCALE2 0.000000 0.012480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013532 0.00000 MTRIX1 1 0.999324 -0.036751 0.000600 22.80820 1 MTRIX2 1 -0.036748 -0.999313 -0.004775 -38.01590 1 MTRIX3 1 0.000775 0.004750 -0.999988 -58.34020 1