data_3I4H # _entry.id 3I4H # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.313 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3I4H RCSB RCSB053952 WWPDB D_1000053952 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3I4H _pdbx_database_status.recvd_initial_deposition_date 2009-07-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Carte, J.' 1 'Wang, R.' 2 'Li, H.' 3 'Terns, R.M.' 4 'Terns, M.P.' 5 # _citation.id primary _citation.title 'Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes' _citation.journal_abbrev 'Genes Dev.' _citation.journal_volume 22 _citation.page_first 3489 _citation.page_last 3496 _citation.year 2008 _citation.journal_id_ASTM GEDEEP _citation.country US _citation.journal_id_ISSN 0890-9369 _citation.journal_id_CSD 2056 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19141480 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Carte, J.' 1 ? primary 'Wang, R.' 2 ? primary 'Li, H.' 3 ? primary 'Terns, R.M.' 4 ? primary 'Terns, M.P.' 5 ? # _cell.entry_id 3I4H _cell.length_a 84.745 _cell.length_b 84.745 _cell.length_c 81.679 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3I4H _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description endoribonuclease _entity.formula_weight 31793.701 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAHHHHHHGSRFLIRLVPEDKDRAFKVPYNHQYYLQGLIYNAIKSSNPKLATYLHEVKGPKLFTYSLFMAEKREHPKGLP YFLGYKKGFFYFSTCVPEIAEALVNGLLMNPEVRLWDERFYLHEIKVLREPKKFNGSTFVTLSPIAVTVVRKGKSYDVPP MEKEFYSIIKDDLQDKYVMAYGDKPPSEFEMEVLIAKPKRFRIKPGIYQTAWHLVFRAYGNDDLLKVGYEVGFGEKNSLG FGMVKVEGNKTTKEAEEQEKITFNSREELKTGV ; _entity_poly.pdbx_seq_one_letter_code_can ;MAHHHHHHGSRFLIRLVPEDKDRAFKVPYNHQYYLQGLIYNAIKSSNPKLATYLHEVKGPKLFTYSLFMAEKREHPKGLP YFLGYKKGFFYFSTCVPEIAEALVNGLLMNPEVRLWDERFYLHEIKVLREPKKFNGSTFVTLSPIAVTVVRKGKSYDVPP MEKEFYSIIKDDLQDKYVMAYGDKPPSEFEMEVLIAKPKRFRIKPGIYQTAWHLVFRAYGNDDLLKVGYEVGFGEKNSLG FGMVKVEGNKTTKEAEEQEKITFNSREELKTGV ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 GLY n 1 10 SER n 1 11 ARG n 1 12 PHE n 1 13 LEU n 1 14 ILE n 1 15 ARG n 1 16 LEU n 1 17 VAL n 1 18 PRO n 1 19 GLU n 1 20 ASP n 1 21 LYS n 1 22 ASP n 1 23 ARG n 1 24 ALA n 1 25 PHE n 1 26 LYS n 1 27 VAL n 1 28 PRO n 1 29 TYR n 1 30 ASN n 1 31 HIS n 1 32 GLN n 1 33 TYR n 1 34 TYR n 1 35 LEU n 1 36 GLN n 1 37 GLY n 1 38 LEU n 1 39 ILE n 1 40 TYR n 1 41 ASN n 1 42 ALA n 1 43 ILE n 1 44 LYS n 1 45 SER n 1 46 SER n 1 47 ASN n 1 48 PRO n 1 49 LYS n 1 50 LEU n 1 51 ALA n 1 52 THR n 1 53 TYR n 1 54 LEU n 1 55 HIS n 1 56 GLU n 1 57 VAL n 1 58 LYS n 1 59 GLY n 1 60 PRO n 1 61 LYS n 1 62 LEU n 1 63 PHE n 1 64 THR n 1 65 TYR n 1 66 SER n 1 67 LEU n 1 68 PHE n 1 69 MET n 1 70 ALA n 1 71 GLU n 1 72 LYS n 1 73 ARG n 1 74 GLU n 1 75 HIS n 1 76 PRO n 1 77 LYS n 1 78 GLY n 1 79 LEU n 1 80 PRO n 1 81 TYR n 1 82 PHE n 1 83 LEU n 1 84 GLY n 1 85 TYR n 1 86 LYS n 1 87 LYS n 1 88 GLY n 1 89 PHE n 1 90 PHE n 1 91 TYR n 1 92 PHE n 1 93 SER n 1 94 THR n 1 95 CYS n 1 96 VAL n 1 97 PRO n 1 98 GLU n 1 99 ILE n 1 100 ALA n 1 101 GLU n 1 102 ALA n 1 103 LEU n 1 104 VAL n 1 105 ASN n 1 106 GLY n 1 107 LEU n 1 108 LEU n 1 109 MET n 1 110 ASN n 1 111 PRO n 1 112 GLU n 1 113 VAL n 1 114 ARG n 1 115 LEU n 1 116 TRP n 1 117 ASP n 1 118 GLU n 1 119 ARG n 1 120 PHE n 1 121 TYR n 1 122 LEU n 1 123 HIS n 1 124 GLU n 1 125 ILE n 1 126 LYS n 1 127 VAL n 1 128 LEU n 1 129 ARG n 1 130 GLU n 1 131 PRO n 1 132 LYS n 1 133 LYS n 1 134 PHE n 1 135 ASN n 1 136 GLY n 1 137 SER n 1 138 THR n 1 139 PHE n 1 140 VAL n 1 141 THR n 1 142 LEU n 1 143 SER n 1 144 PRO n 1 145 ILE n 1 146 ALA n 1 147 VAL n 1 148 THR n 1 149 VAL n 1 150 VAL n 1 151 ARG n 1 152 LYS n 1 153 GLY n 1 154 LYS n 1 155 SER n 1 156 TYR n 1 157 ASP n 1 158 VAL n 1 159 PRO n 1 160 PRO n 1 161 MET n 1 162 GLU n 1 163 LYS n 1 164 GLU n 1 165 PHE n 1 166 TYR n 1 167 SER n 1 168 ILE n 1 169 ILE n 1 170 LYS n 1 171 ASP n 1 172 ASP n 1 173 LEU n 1 174 GLN n 1 175 ASP n 1 176 LYS n 1 177 TYR n 1 178 VAL n 1 179 MET n 1 180 ALA n 1 181 TYR n 1 182 GLY n 1 183 ASP n 1 184 LYS n 1 185 PRO n 1 186 PRO n 1 187 SER n 1 188 GLU n 1 189 PHE n 1 190 GLU n 1 191 MET n 1 192 GLU n 1 193 VAL n 1 194 LEU n 1 195 ILE n 1 196 ALA n 1 197 LYS n 1 198 PRO n 1 199 LYS n 1 200 ARG n 1 201 PHE n 1 202 ARG n 1 203 ILE n 1 204 LYS n 1 205 PRO n 1 206 GLY n 1 207 ILE n 1 208 TYR n 1 209 GLN n 1 210 THR n 1 211 ALA n 1 212 TRP n 1 213 HIS n 1 214 LEU n 1 215 VAL n 1 216 PHE n 1 217 ARG n 1 218 ALA n 1 219 TYR n 1 220 GLY n 1 221 ASN n 1 222 ASP n 1 223 ASP n 1 224 LEU n 1 225 LEU n 1 226 LYS n 1 227 VAL n 1 228 GLY n 1 229 TYR n 1 230 GLU n 1 231 VAL n 1 232 GLY n 1 233 PHE n 1 234 GLY n 1 235 GLU n 1 236 LYS n 1 237 ASN n 1 238 SER n 1 239 LEU n 1 240 GLY n 1 241 PHE n 1 242 GLY n 1 243 MET n 1 244 VAL n 1 245 LYS n 1 246 VAL n 1 247 GLU n 1 248 GLY n 1 249 ASN n 1 250 LYS n 1 251 THR n 1 252 THR n 1 253 LYS n 1 254 GLU n 1 255 ALA n 1 256 GLU n 1 257 GLU n 1 258 GLN n 1 259 GLU n 1 260 LYS n 1 261 ILE n 1 262 THR n 1 263 PHE n 1 264 ASN n 1 265 SER n 1 266 ARG n 1 267 GLU n 1 268 GLU n 1 269 LEU n 1 270 LYS n 1 271 THR n 1 272 GLY n 1 273 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PF1131 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrococcus furiosus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2261 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8U1S4_PYRFU _struct_ref.pdbx_db_accession Q8U1S4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RFLIRLVPEDKDRAFKVPYNHQYYLQGLIYNAIKSSNPKLATYLHEVKGPKLFTYSLFMAEKREHPKGLPYFLGYKKGFF YFSTCVPEIAEALVNGLLMNPEVRLWDERFYLHEIKVLREPKKFNGSTFVTLSPIAVTVVRKGKSYDVPPMEKEFYSIIK DDLQDKYVMAYGDKPPSEFEMEVLIAKPKRFRIKPGIYQTAWHLVFRAYGNDDLLKVGYEVGFGEKNSLGFGMVKVEGNK TTKEAEEQEKITFNSREELKTGV ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3I4H _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 11 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 273 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8U1S4 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 264 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 270 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3I4H MET X 1 ? UNP Q8U1S4 ? ? 'EXPRESSION TAG' -2 1 1 3I4H ALA X 2 ? UNP Q8U1S4 ? ? 'EXPRESSION TAG' -1 2 1 3I4H HIS X 3 ? UNP Q8U1S4 ? ? 'EXPRESSION TAG' 0 3 1 3I4H HIS X 4 ? UNP Q8U1S4 ? ? 'EXPRESSION TAG' 1 4 1 3I4H HIS X 5 ? UNP Q8U1S4 ? ? 'EXPRESSION TAG' 2 5 1 3I4H HIS X 6 ? UNP Q8U1S4 ? ? 'EXPRESSION TAG' 3 6 1 3I4H HIS X 7 ? UNP Q8U1S4 ? ? 'EXPRESSION TAG' 4 7 1 3I4H HIS X 8 ? UNP Q8U1S4 ? ? 'EXPRESSION TAG' 5 8 1 3I4H GLY X 9 ? UNP Q8U1S4 ? ? 'EXPRESSION TAG' 6 9 1 3I4H SER X 10 ? UNP Q8U1S4 ? ? 'EXPRESSION TAG' 7 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3I4H _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.66 _exptl_crystal.density_percent_sol 53.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 303 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;0.02 M Magnesium chloride hexahydrate, 0.05 M MES monohydrate pH 6.0, 15% v/v 2-Propanol, temperature 303K, VAPOR DIFFUSION, HANGING DROP ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2008-03-16 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.5418 1.0 2 1.5621 1.0 3 1.7321 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 18-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 18-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418,1.5621,1.7321 # _reflns.entry_id 3I4H _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 20.5 _reflns.d_resolution_high 1.8 _reflns.number_obs ? _reflns.number_all 29842 _reflns.percent_possible_obs 89 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.059 _reflns.pdbx_netI_over_sigmaI 2.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 17.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.8 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 48 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.059 _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.pdbx_redundancy 17.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3I4H _refine.ls_number_reflns_obs 15277 _refine.ls_number_reflns_all 1089 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.5 _refine.ls_d_res_high 2.25 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.22951 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22635 _refine.ls_R_factor_R_free 0.28896 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 832 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.922 _refine.B_iso_mean 63.312 _refine.aniso_B[1][1] -0.01 _refine.aniso_B[2][2] -0.01 _refine.aniso_B[3][3] 0.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.260 _refine.pdbx_overall_ESU_R_Free 0.234 _refine.overall_SU_ML 0.183 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 7.294 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1913 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1913 _refine_hist.d_res_high 2.25 _refine_hist.d_res_low 20.5 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.033 0.022 ? 1971 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.429 1.969 ? 2660 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 8.061 5.000 ? 229 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.462 23.226 ? 93 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 20.126 15.000 ? 342 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.719 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.195 0.200 ? 274 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.012 0.020 ? 1505 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.254 0.200 ? 790 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.334 0.200 ? 1288 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.185 0.200 ? 57 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.149 0.200 ? 27 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.086 0.200 ? 4 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.125 1.500 ? 1217 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 3.330 2.000 ? 1870 'X-RAY DIFFRACTION' ? r_scbond_it 4.142 3.000 ? 907 'X-RAY DIFFRACTION' ? r_scangle_it 5.730 4.500 ? 790 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.25 _refine_ls_shell.d_res_low 2.305 _refine_ls_shell.number_reflns_R_work 936 _refine_ls_shell.R_factor_R_work 0.281 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.332 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 53 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3I4H _struct.title 'Crystal structure of Cas6 in Pyrococcus furiosus' _struct.pdbx_descriptor endoribonuclease _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3I4H _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'endoribonuclease, HYDROLASE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 31 ? ASN A 47 ? HIS X 28 ASN X 44 1 ? 17 HELX_P HELX_P2 2 ASN A 47 ? VAL A 57 ? ASN X 44 VAL X 54 1 ? 11 HELX_P HELX_P3 3 VAL A 96 ? ASN A 110 ? VAL X 93 ASN X 107 1 ? 15 HELX_P HELX_P4 4 LYS A 163 ? TYR A 181 ? LYS X 160 TYR X 178 1 ? 19 HELX_P HELX_P5 5 ASN A 221 ? GLY A 232 ? ASN X 218 GLY X 229 1 ? 12 HELX_P HELX_P6 6 LYS A 236 ? GLY A 240 ? LYS X 233 GLY X 237 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 25 ? PRO A 28 ? PHE X 22 PRO X 25 A 2 TYR A 81 ? THR A 94 ? TYR X 78 THR X 91 A 3 MET A 69 ? GLU A 71 ? MET X 66 GLU X 68 B 1 PHE A 63 ? TYR A 65 ? PHE X 60 TYR X 62 B 2 TYR A 81 ? THR A 94 ? TYR X 78 THR X 91 B 3 SER A 10 ? PRO A 18 ? SER X 7 PRO X 15 B 4 GLU A 118 ? VAL A 127 ? GLU X 115 VAL X 124 B 5 GLU A 112 ? LEU A 115 ? GLU X 109 LEU X 112 C 1 PHE A 189 ? ARG A 200 ? PHE X 186 ARG X 197 C 2 THR A 210 ? GLY A 220 ? THR X 207 GLY X 217 C 3 THR A 138 ? THR A 141 ? THR X 135 THR X 138 C 4 VAL A 244 ? VAL A 246 ? VAL X 241 VAL X 243 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 25 ? N PHE X 22 O GLY A 84 ? O GLY X 81 A 2 3 O PHE A 89 ? O PHE X 86 N MET A 69 ? N MET X 66 B 1 2 N THR A 64 ? N THR X 61 O SER A 93 ? O SER X 90 B 2 3 O GLY A 88 ? O GLY X 85 N LEU A 16 ? N LEU X 13 B 3 4 N LEU A 13 ? N LEU X 10 O LYS A 126 ? O LYS X 123 B 4 5 O GLU A 118 ? O GLU X 115 N LEU A 115 ? N LEU X 112 C 1 2 N GLU A 190 ? N GLU X 187 O TYR A 219 ? O TYR X 216 C 2 3 O PHE A 216 ? O PHE X 213 N PHE A 139 ? N PHE X 136 C 3 4 N VAL A 140 ? N VAL X 137 O LYS A 245 ? O LYS X 242 # _database_PDB_matrix.entry_id 3I4H _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3I4H _atom_sites.fract_transf_matrix[1][1] 0.011800 _atom_sites.fract_transf_matrix[1][2] 0.006813 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013626 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012243 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -2 ? ? ? X . n A 1 2 ALA 2 -1 ? ? ? X . n A 1 3 HIS 3 0 ? ? ? X . n A 1 4 HIS 4 1 ? ? ? X . n A 1 5 HIS 5 2 ? ? ? X . n A 1 6 HIS 6 3 3 HIS HIS X . n A 1 7 HIS 7 4 4 HIS HIS X . n A 1 8 HIS 8 5 5 HIS HIS X . n A 1 9 GLY 9 6 6 GLY GLY X . n A 1 10 SER 10 7 7 SER SER X . n A 1 11 ARG 11 8 8 ARG ARG X . n A 1 12 PHE 12 9 9 PHE PHE X . n A 1 13 LEU 13 10 10 LEU LEU X . n A 1 14 ILE 14 11 11 ILE ILE X . n A 1 15 ARG 15 12 12 ARG ARG X . n A 1 16 LEU 16 13 13 LEU LEU X . n A 1 17 VAL 17 14 14 VAL VAL X . n A 1 18 PRO 18 15 15 PRO PRO X . n A 1 19 GLU 19 16 16 GLU GLU X . n A 1 20 ASP 20 17 17 ASP ASP X . n A 1 21 LYS 21 18 18 LYS LYS X . n A 1 22 ASP 22 19 19 ASP ASP X . n A 1 23 ARG 23 20 20 ARG ARG X . n A 1 24 ALA 24 21 21 ALA ALA X . n A 1 25 PHE 25 22 22 PHE PHE X . n A 1 26 LYS 26 23 23 LYS LYS X . n A 1 27 VAL 27 24 24 VAL VAL X . n A 1 28 PRO 28 25 25 PRO PRO X . n A 1 29 TYR 29 26 26 TYR TYR X . n A 1 30 ASN 30 27 27 ASN ASN X . n A 1 31 HIS 31 28 28 HIS HIS X . n A 1 32 GLN 32 29 29 GLN GLN X . n A 1 33 TYR 33 30 30 TYR TYR X . n A 1 34 TYR 34 31 31 TYR TYR X . n A 1 35 LEU 35 32 32 LEU LEU X . n A 1 36 GLN 36 33 33 GLN GLN X . n A 1 37 GLY 37 34 34 GLY GLY X . n A 1 38 LEU 38 35 35 LEU LEU X . n A 1 39 ILE 39 36 36 ILE ILE X . n A 1 40 TYR 40 37 37 TYR TYR X . n A 1 41 ASN 41 38 38 ASN ASN X . n A 1 42 ALA 42 39 39 ALA ALA X . n A 1 43 ILE 43 40 40 ILE ILE X . n A 1 44 LYS 44 41 41 LYS LYS X . n A 1 45 SER 45 42 42 SER SER X . n A 1 46 SER 46 43 43 SER SER X . n A 1 47 ASN 47 44 44 ASN ASN X . n A 1 48 PRO 48 45 45 PRO PRO X . n A 1 49 LYS 49 46 46 LYS LYS X . n A 1 50 LEU 50 47 47 LEU LEU X . n A 1 51 ALA 51 48 48 ALA ALA X . n A 1 52 THR 52 49 49 THR THR X . n A 1 53 TYR 53 50 50 TYR TYR X . n A 1 54 LEU 54 51 51 LEU LEU X . n A 1 55 HIS 55 52 52 HIS HIS X . n A 1 56 GLU 56 53 53 GLU GLU X . n A 1 57 VAL 57 54 54 VAL VAL X . n A 1 58 LYS 58 55 55 LYS LYS X . n A 1 59 GLY 59 56 56 GLY GLY X . n A 1 60 PRO 60 57 57 PRO PRO X . n A 1 61 LYS 61 58 58 LYS LYS X . n A 1 62 LEU 62 59 59 LEU LEU X . n A 1 63 PHE 63 60 60 PHE PHE X . n A 1 64 THR 64 61 61 THR THR X . n A 1 65 TYR 65 62 62 TYR TYR X . n A 1 66 SER 66 63 63 SER SER X . n A 1 67 LEU 67 64 64 LEU LEU X . n A 1 68 PHE 68 65 65 PHE PHE X . n A 1 69 MET 69 66 66 MET MET X . n A 1 70 ALA 70 67 67 ALA ALA X . n A 1 71 GLU 71 68 68 GLU GLU X . n A 1 72 LYS 72 69 69 LYS LYS X . n A 1 73 ARG 73 70 70 ARG ARG X . n A 1 74 GLU 74 71 71 GLU GLU X . n A 1 75 HIS 75 72 72 HIS HIS X . n A 1 76 PRO 76 73 73 PRO PRO X . n A 1 77 LYS 77 74 74 LYS LYS X . n A 1 78 GLY 78 75 75 GLY GLY X . n A 1 79 LEU 79 76 76 LEU LEU X . n A 1 80 PRO 80 77 77 PRO PRO X . n A 1 81 TYR 81 78 78 TYR TYR X . n A 1 82 PHE 82 79 79 PHE PHE X . n A 1 83 LEU 83 80 80 LEU LEU X . n A 1 84 GLY 84 81 81 GLY GLY X . n A 1 85 TYR 85 82 82 TYR TYR X . n A 1 86 LYS 86 83 83 LYS LYS X . n A 1 87 LYS 87 84 84 LYS LYS X . n A 1 88 GLY 88 85 85 GLY GLY X . n A 1 89 PHE 89 86 86 PHE PHE X . n A 1 90 PHE 90 87 87 PHE PHE X . n A 1 91 TYR 91 88 88 TYR TYR X . n A 1 92 PHE 92 89 89 PHE PHE X . n A 1 93 SER 93 90 90 SER SER X . n A 1 94 THR 94 91 91 THR THR X . n A 1 95 CYS 95 92 92 CYS CYS X . n A 1 96 VAL 96 93 93 VAL VAL X . n A 1 97 PRO 97 94 94 PRO PRO X . n A 1 98 GLU 98 95 95 GLU GLU X . n A 1 99 ILE 99 96 96 ILE ILE X . n A 1 100 ALA 100 97 97 ALA ALA X . n A 1 101 GLU 101 98 98 GLU GLU X . n A 1 102 ALA 102 99 99 ALA ALA X . n A 1 103 LEU 103 100 100 LEU LEU X . n A 1 104 VAL 104 101 101 VAL VAL X . n A 1 105 ASN 105 102 102 ASN ASN X . n A 1 106 GLY 106 103 103 GLY GLY X . n A 1 107 LEU 107 104 104 LEU LEU X . n A 1 108 LEU 108 105 105 LEU LEU X . n A 1 109 MET 109 106 106 MET MET X . n A 1 110 ASN 110 107 107 ASN ASN X . n A 1 111 PRO 111 108 108 PRO PRO X . n A 1 112 GLU 112 109 109 GLU GLU X . n A 1 113 VAL 113 110 110 VAL VAL X . n A 1 114 ARG 114 111 111 ARG ARG X . n A 1 115 LEU 115 112 112 LEU LEU X . n A 1 116 TRP 116 113 113 TRP TRP X . n A 1 117 ASP 117 114 114 ASP ASP X . n A 1 118 GLU 118 115 115 GLU GLU X . n A 1 119 ARG 119 116 116 ARG ARG X . n A 1 120 PHE 120 117 117 PHE PHE X . n A 1 121 TYR 121 118 118 TYR TYR X . n A 1 122 LEU 122 119 119 LEU LEU X . n A 1 123 HIS 123 120 120 HIS HIS X . n A 1 124 GLU 124 121 121 GLU GLU X . n A 1 125 ILE 125 122 122 ILE ILE X . n A 1 126 LYS 126 123 123 LYS LYS X . n A 1 127 VAL 127 124 124 VAL VAL X . n A 1 128 LEU 128 125 125 LEU LEU X . n A 1 129 ARG 129 126 126 ARG ARG X . n A 1 130 GLU 130 127 127 GLU GLU X . n A 1 131 PRO 131 128 128 PRO PRO X . n A 1 132 LYS 132 129 129 LYS LYS X . n A 1 133 LYS 133 130 130 LYS LYS X . n A 1 134 PHE 134 131 131 PHE PHE X . n A 1 135 ASN 135 132 132 ASN ASN X . n A 1 136 GLY 136 133 133 GLY GLY X . n A 1 137 SER 137 134 134 SER SER X . n A 1 138 THR 138 135 135 THR THR X . n A 1 139 PHE 139 136 136 PHE PHE X . n A 1 140 VAL 140 137 137 VAL VAL X . n A 1 141 THR 141 138 138 THR THR X . n A 1 142 LEU 142 139 139 LEU LEU X . n A 1 143 SER 143 140 140 SER SER X . n A 1 144 PRO 144 141 141 PRO PRO X . n A 1 145 ILE 145 142 142 ILE ILE X . n A 1 146 ALA 146 143 143 ALA ALA X . n A 1 147 VAL 147 144 144 VAL VAL X . n A 1 148 THR 148 145 145 THR THR X . n A 1 149 VAL 149 146 146 VAL VAL X . n A 1 150 VAL 150 147 147 VAL VAL X . n A 1 151 ARG 151 148 ? ? ? X . n A 1 152 LYS 152 149 ? ? ? X . n A 1 153 GLY 153 150 ? ? ? X . n A 1 154 LYS 154 151 ? ? ? X . n A 1 155 SER 155 152 ? ? ? X . n A 1 156 TYR 156 153 153 TYR TYR X . n A 1 157 ASP 157 154 154 ASP ASP X . n A 1 158 VAL 158 155 155 VAL VAL X . n A 1 159 PRO 159 156 156 PRO PRO X . n A 1 160 PRO 160 157 157 PRO PRO X . n A 1 161 MET 161 158 158 MET MET X . n A 1 162 GLU 162 159 159 GLU GLU X . n A 1 163 LYS 163 160 160 LYS LYS X . n A 1 164 GLU 164 161 161 GLU GLU X . n A 1 165 PHE 165 162 162 PHE PHE X . n A 1 166 TYR 166 163 163 TYR TYR X . n A 1 167 SER 167 164 164 SER SER X . n A 1 168 ILE 168 165 165 ILE ILE X . n A 1 169 ILE 169 166 166 ILE ILE X . n A 1 170 LYS 170 167 167 LYS LYS X . n A 1 171 ASP 171 168 168 ASP ASP X . n A 1 172 ASP 172 169 169 ASP ASP X . n A 1 173 LEU 173 170 170 LEU LEU X . n A 1 174 GLN 174 171 171 GLN GLN X . n A 1 175 ASP 175 172 172 ASP ASP X . n A 1 176 LYS 176 173 173 LYS LYS X . n A 1 177 TYR 177 174 174 TYR TYR X . n A 1 178 VAL 178 175 175 VAL VAL X . n A 1 179 MET 179 176 176 MET MET X . n A 1 180 ALA 180 177 177 ALA ALA X . n A 1 181 TYR 181 178 178 TYR TYR X . n A 1 182 GLY 182 179 179 GLY GLY X . n A 1 183 ASP 183 180 180 ASP ASP X . n A 1 184 LYS 184 181 181 LYS LYS X . n A 1 185 PRO 185 182 182 PRO PRO X . n A 1 186 PRO 186 183 183 PRO PRO X . n A 1 187 SER 187 184 184 SER SER X . n A 1 188 GLU 188 185 185 GLU GLU X . n A 1 189 PHE 189 186 186 PHE PHE X . n A 1 190 GLU 190 187 187 GLU GLU X . n A 1 191 MET 191 188 188 MET MET X . n A 1 192 GLU 192 189 189 GLU GLU X . n A 1 193 VAL 193 190 190 VAL VAL X . n A 1 194 LEU 194 191 191 LEU LEU X . n A 1 195 ILE 195 192 192 ILE ILE X . n A 1 196 ALA 196 193 193 ALA ALA X . n A 1 197 LYS 197 194 194 LYS LYS X . n A 1 198 PRO 198 195 195 PRO PRO X . n A 1 199 LYS 199 196 196 LYS LYS X . n A 1 200 ARG 200 197 197 ARG ARG X . n A 1 201 PHE 201 198 198 PHE PHE X . n A 1 202 ARG 202 199 199 ARG ARG X . n A 1 203 ILE 203 200 ? ? ? X . n A 1 204 LYS 204 201 ? ? ? X . n A 1 205 PRO 205 202 ? ? ? X . n A 1 206 GLY 206 203 ? ? ? X . n A 1 207 ILE 207 204 ? ? ? X . n A 1 208 TYR 208 205 ? ? ? X . n A 1 209 GLN 209 206 206 GLN GLN X . n A 1 210 THR 210 207 207 THR THR X . n A 1 211 ALA 211 208 208 ALA ALA X . n A 1 212 TRP 212 209 209 TRP TRP X . n A 1 213 HIS 213 210 210 HIS HIS X . n A 1 214 LEU 214 211 211 LEU LEU X . n A 1 215 VAL 215 212 212 VAL VAL X . n A 1 216 PHE 216 213 213 PHE PHE X . n A 1 217 ARG 217 214 214 ARG ARG X . n A 1 218 ALA 218 215 215 ALA ALA X . n A 1 219 TYR 219 216 216 TYR TYR X . n A 1 220 GLY 220 217 217 GLY GLY X . n A 1 221 ASN 221 218 218 ASN ASN X . n A 1 222 ASP 222 219 219 ASP ASP X . n A 1 223 ASP 223 220 220 ASP ASP X . n A 1 224 LEU 224 221 221 LEU LEU X . n A 1 225 LEU 225 222 222 LEU LEU X . n A 1 226 LYS 226 223 223 LYS LYS X . n A 1 227 VAL 227 224 224 VAL VAL X . n A 1 228 GLY 228 225 225 GLY GLY X . n A 1 229 TYR 229 226 226 TYR TYR X . n A 1 230 GLU 230 227 227 GLU GLU X . n A 1 231 VAL 231 228 228 VAL VAL X . n A 1 232 GLY 232 229 229 GLY GLY X . n A 1 233 PHE 233 230 230 PHE PHE X . n A 1 234 GLY 234 231 231 GLY GLY X . n A 1 235 GLU 235 232 232 GLU GLU X . n A 1 236 LYS 236 233 233 LYS LYS X . n A 1 237 ASN 237 234 234 ASN ASN X . n A 1 238 SER 238 235 235 SER SER X . n A 1 239 LEU 239 236 236 LEU LEU X . n A 1 240 GLY 240 237 237 GLY GLY X . n A 1 241 PHE 241 238 238 PHE PHE X . n A 1 242 GLY 242 239 239 GLY GLY X . n A 1 243 MET 243 240 240 MET MET X . n A 1 244 VAL 244 241 241 VAL VAL X . n A 1 245 LYS 245 242 242 LYS LYS X . n A 1 246 VAL 246 243 243 VAL VAL X . n A 1 247 GLU 247 244 244 GLU GLU X . n A 1 248 GLY 248 245 245 GLY GLY X . n A 1 249 ASN 249 246 ? ? ? X . n A 1 250 LYS 250 247 ? ? ? X . n A 1 251 THR 251 248 ? ? ? X . n A 1 252 THR 252 249 ? ? ? X . n A 1 253 LYS 253 250 ? ? ? X . n A 1 254 GLU 254 251 ? ? ? X . n A 1 255 ALA 255 252 ? ? ? X . n A 1 256 GLU 256 253 ? ? ? X . n A 1 257 GLU 257 254 ? ? ? X . n A 1 258 GLN 258 255 ? ? ? X . n A 1 259 GLU 259 256 ? ? ? X . n A 1 260 LYS 260 257 ? ? ? X . n A 1 261 ILE 261 258 ? ? ? X . n A 1 262 THR 262 259 ? ? ? X . n A 1 263 PHE 263 260 ? ? ? X . n A 1 264 ASN 264 261 ? ? ? X . n A 1 265 SER 265 262 ? ? ? X . n A 1 266 ARG 266 263 ? ? ? X . n A 1 267 GLU 267 264 ? ? ? X . n A 1 268 GLU 268 265 ? ? ? X . n A 1 269 LEU 269 266 ? ? ? X . n A 1 270 LYS 270 267 ? ? ? X . n A 1 271 THR 271 268 ? ? ? X . n A 1 272 GLY 272 269 ? ? ? X . n A 1 273 VAL 273 270 ? ? ? X . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-09-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2019-07-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 3 'Structure model' '_software.version' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 SOLVE phasing . ? 2 CNS refinement . ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 HKL-2000 'data collection' . ? 6 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CG2 X VAL 175 ? ? O X ASP 180 ? ? 1.82 2 1 O X LEU 104 ? ? O X ASN 107 ? ? 1.94 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CA X SER 90 ? ? CB X SER 90 ? ? 1.629 1.525 0.104 0.015 N 2 1 CG X GLU 95 ? ? CD X GLU 95 ? ? 1.679 1.515 0.164 0.015 N 3 1 CG X GLU 109 ? ? CD X GLU 109 ? ? 1.613 1.515 0.098 0.015 N 4 1 CE X LYS 123 ? ? NZ X LYS 123 ? ? 1.653 1.486 0.167 0.025 N 5 1 CD X GLU 187 ? ? OE1 X GLU 187 ? ? 1.322 1.252 0.070 0.011 N 6 1 CB X VAL 212 ? ? CG2 X VAL 212 ? ? 1.690 1.524 0.166 0.021 N 7 1 CD1 X TYR 226 ? ? CE1 X TYR 226 ? ? 1.290 1.389 -0.099 0.015 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE X ARG 12 ? ? CZ X ARG 12 ? ? NH1 X ARG 12 ? ? 124.10 120.30 3.80 0.50 N 2 1 C X ASN 107 ? ? N X PRO 108 ? ? CD X PRO 108 ? ? 110.21 128.40 -18.19 2.10 Y 3 1 CB X ALA 177 ? ? CA X ALA 177 ? ? C X ALA 177 ? ? 73.33 110.10 -36.77 1.50 N 4 1 N X ALA 177 ? ? CA X ALA 177 ? ? C X ALA 177 ? ? 137.73 111.00 26.73 2.70 N 5 1 N X ASP 180 ? ? CA X ASP 180 ? ? C X ASP 180 ? ? 136.78 111.00 25.78 2.70 N 6 1 CB X ASP 219 ? ? CG X ASP 219 ? ? OD1 X ASP 219 ? ? 125.17 118.30 6.87 0.90 N 7 1 CB X ASP 220 ? ? CG X ASP 220 ? ? OD1 X ASP 220 ? ? 112.49 118.30 -5.81 0.90 N 8 1 CB X ASP 220 ? ? CG X ASP 220 ? ? OD2 X ASP 220 ? ? 124.21 118.30 5.91 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG X 20 ? ? 160.54 171.17 2 1 ASN X 44 ? ? -151.84 84.42 3 1 LEU X 59 ? ? 77.13 35.78 4 1 LYS X 69 ? ? 30.18 176.34 5 1 GLU X 71 ? ? -172.71 115.03 6 1 PRO X 73 ? ? -65.61 -177.88 7 1 LYS X 83 ? ? 74.11 -56.88 8 1 TRP X 113 ? ? 39.44 -125.81 9 1 LEU X 119 ? ? -51.77 107.15 10 1 HIS X 120 ? ? -84.55 -70.32 11 1 ASP X 180 ? ? -135.60 -73.99 12 1 PRO X 183 ? ? -44.10 157.24 13 1 PHE X 198 ? ? -124.12 -54.84 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 GLU _pdbx_validate_peptide_omega.auth_asym_id_1 X _pdbx_validate_peptide_omega.auth_seq_id_1 68 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 LYS _pdbx_validate_peptide_omega.auth_asym_id_2 X _pdbx_validate_peptide_omega.auth_seq_id_2 69 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -143.95 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 X MET -2 ? A MET 1 2 1 Y 1 X ALA -1 ? A ALA 2 3 1 Y 1 X HIS 0 ? A HIS 3 4 1 Y 1 X HIS 1 ? A HIS 4 5 1 Y 1 X HIS 2 ? A HIS 5 6 1 Y 1 X ARG 148 ? A ARG 151 7 1 Y 1 X LYS 149 ? A LYS 152 8 1 Y 1 X GLY 150 ? A GLY 153 9 1 Y 1 X LYS 151 ? A LYS 154 10 1 Y 1 X SER 152 ? A SER 155 11 1 Y 1 X ILE 200 ? A ILE 203 12 1 Y 1 X LYS 201 ? A LYS 204 13 1 Y 1 X PRO 202 ? A PRO 205 14 1 Y 1 X GLY 203 ? A GLY 206 15 1 Y 1 X ILE 204 ? A ILE 207 16 1 Y 1 X TYR 205 ? A TYR 208 17 1 Y 1 X ASN 246 ? A ASN 249 18 1 Y 1 X LYS 247 ? A LYS 250 19 1 Y 1 X THR 248 ? A THR 251 20 1 Y 1 X THR 249 ? A THR 252 21 1 Y 1 X LYS 250 ? A LYS 253 22 1 Y 1 X GLU 251 ? A GLU 254 23 1 Y 1 X ALA 252 ? A ALA 255 24 1 Y 1 X GLU 253 ? A GLU 256 25 1 Y 1 X GLU 254 ? A GLU 257 26 1 Y 1 X GLN 255 ? A GLN 258 27 1 Y 1 X GLU 256 ? A GLU 259 28 1 Y 1 X LYS 257 ? A LYS 260 29 1 Y 1 X ILE 258 ? A ILE 261 30 1 Y 1 X THR 259 ? A THR 262 31 1 Y 1 X PHE 260 ? A PHE 263 32 1 Y 1 X ASN 261 ? A ASN 264 33 1 Y 1 X SER 262 ? A SER 265 34 1 Y 1 X ARG 263 ? A ARG 266 35 1 Y 1 X GLU 264 ? A GLU 267 36 1 Y 1 X GLU 265 ? A GLU 268 37 1 Y 1 X LEU 266 ? A LEU 269 38 1 Y 1 X LYS 267 ? A LYS 270 39 1 Y 1 X THR 268 ? A THR 271 40 1 Y 1 X GLY 269 ? A GLY 272 41 1 Y 1 X VAL 270 ? A VAL 273 #