HEADER TRANSCRIPTION REGULATOR 02-JUL-09 3I4P TITLE CRYSTAL STRUCTURE OF ASNC FAMILY TRANSCRIPTIONAL REGULATOR FROM TITLE 2 AGROBACTERIUM TUMEFACIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, ASNC FAMILY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR. C58; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 GENE: AGR_C_3460, ATU1885; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 GOLD MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS TRANSCRIPTIONAL REGULATOR, ASNC FAMIL, PSI, STRUCTURAL GENOMICS, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, DNA-BINDING, TRANSCRIPTION, TRANSCRIPTION KEYWDS 4 REGULATION, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR M.CYMBOROWSKI,M.CHRUSZCZ,H.LUO,X.XU,A.SAVCHENKO,A.EDWARDS, AUTHOR 2 A.JOACHIMIAK,W.MINOR,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 13-APR-22 3I4P 1 AUTHOR JRNL REMARK LINK REVDAT 2 13-JUL-11 3I4P 1 VERSN REVDAT 1 28-JUL-09 3I4P 0 JRNL AUTH M.CYMBOROWSKI,M.CHRUSZCZ,H.LUO,X.XU,A.SAVCHENKO,A.EDWARDS, JRNL AUTH 2 A.JOACHIMIAK,W.MINOR JRNL TITL CRYSTAL STRUCTURE OF ASNC FAMILY TRANSCRIPTIONAL REGULATOR JRNL TITL 2 FROM AGROBACTERIUM TUMEFACIENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 11658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 568 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 806 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1219 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 117 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.13000 REMARK 3 B22 (A**2) : -1.13000 REMARK 3 B33 (A**2) : 2.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.215 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.137 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.410 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1253 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 861 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1696 ; 1.526 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2092 ; 0.967 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 154 ; 6.999 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 52 ;27.265 ;22.885 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 231 ;16.819 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.158 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 201 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1358 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 259 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 775 ; 0.671 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 305 ; 0.160 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1262 ; 1.200 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 478 ; 1.976 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 434 ; 3.213 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 22 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5370 43.8420 7.9890 REMARK 3 T TENSOR REMARK 3 T11: 0.1786 T22: 0.0966 REMARK 3 T33: 0.2903 T12: 0.0307 REMARK 3 T13: -0.2051 T23: -0.0689 REMARK 3 L TENSOR REMARK 3 L11: 10.1185 L22: 9.2177 REMARK 3 L33: 0.8221 L12: -0.0394 REMARK 3 L13: 0.4349 L23: 0.1992 REMARK 3 S TENSOR REMARK 3 S11: -0.2406 S12: -0.5140 S13: 0.7082 REMARK 3 S21: 0.3729 S22: 0.0424 S23: -0.3129 REMARK 3 S31: -0.0792 S32: 0.1225 S33: 0.1981 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 49 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5510 48.0490 2.0860 REMARK 3 T TENSOR REMARK 3 T11: 0.4400 T22: 0.3234 REMARK 3 T33: 0.7409 T12: -0.0260 REMARK 3 T13: -0.1921 T23: 0.0461 REMARK 3 L TENSOR REMARK 3 L11: 6.2343 L22: 9.1467 REMARK 3 L33: 4.9371 L12: 1.2384 REMARK 3 L13: 0.9302 L23: 5.8173 REMARK 3 S TENSOR REMARK 3 S11: -0.2426 S12: 0.0855 S13: 1.0254 REMARK 3 S21: -0.5358 S22: 0.1959 S23: -0.3639 REMARK 3 S31: -0.3154 S32: 0.2824 S33: 0.0467 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): -4.3620 23.9330 -6.1060 REMARK 3 T TENSOR REMARK 3 T11: 0.1051 T22: 0.1434 REMARK 3 T33: 0.1591 T12: -0.0124 REMARK 3 T13: -0.1143 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 3.5431 L22: 4.1664 REMARK 3 L33: 1.2435 L12: -1.2365 REMARK 3 L13: -0.2015 L23: -0.5338 REMARK 3 S TENSOR REMARK 3 S11: -0.0235 S12: 0.3981 S13: -0.2312 REMARK 3 S21: -0.0825 S22: 0.0142 S23: 0.2336 REMARK 3 S31: 0.0963 S32: -0.0381 S33: 0.0092 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): -3.9160 19.9780 -10.2530 REMARK 3 T TENSOR REMARK 3 T11: 0.2081 T22: 0.2653 REMARK 3 T33: 0.1006 T12: -0.0084 REMARK 3 T13: -0.0617 T23: -0.0654 REMARK 3 L TENSOR REMARK 3 L11: 6.0109 L22: 2.1705 REMARK 3 L33: 1.4511 L12: 1.1774 REMARK 3 L13: 1.3241 L23: -0.1012 REMARK 3 S TENSOR REMARK 3 S11: -0.1316 S12: 0.6776 S13: -0.4525 REMARK 3 S21: -0.3850 S22: 0.0796 S23: 0.0632 REMARK 3 S31: 0.1229 S32: 0.1072 S33: 0.0520 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 122 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): -1.0690 22.1920 -2.1960 REMARK 3 T TENSOR REMARK 3 T11: 0.0980 T22: 0.1527 REMARK 3 T33: 0.0619 T12: 0.0168 REMARK 3 T13: -0.0707 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 3.2790 L22: 3.6452 REMARK 3 L33: 2.5608 L12: 0.1916 REMARK 3 L13: 0.8029 L23: 0.2330 REMARK 3 S TENSOR REMARK 3 S11: -0.0283 S12: 0.2310 S13: -0.0187 REMARK 3 S21: -0.1715 S22: -0.0316 S23: 0.1446 REMARK 3 S31: 0.0463 S32: -0.0251 S33: 0.0599 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3I4P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000053960. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9767 REMARK 200 MONOCHROMATOR : SI-111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ARGONNE APS1 CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13438 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : 0.14500 REMARK 200 FOR THE DATA SET : 22.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.20 REMARK 200 R MERGE FOR SHELL (I) : 0.98000 REMARK 200 R SYM FOR SHELL (I) : 0.98000 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, SHELXD, DM, RESOLVE, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA(OAC), 3.2M NACL, PH 4.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 70.91650 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 70.91650 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 25.14150 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 70.91650 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 70.91650 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 25.14150 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 70.91650 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 70.91650 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 25.14150 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 70.91650 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 70.91650 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 25.14150 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 70.91650 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 70.91650 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 25.14150 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 70.91650 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 70.91650 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 25.14150 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 70.91650 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 70.91650 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 25.14150 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 70.91650 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 70.91650 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 25.14150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 40030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -523.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 164 LIES ON A SPECIAL POSITION. REMARK 375 CL CL A 166 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 154 REMARK 465 ASP A 155 REMARK 465 ASN A 156 REMARK 465 PRO A 157 REMARK 465 LYS A 158 REMARK 465 SER A 159 REMARK 465 GLY A 160 REMARK 465 GLU A 161 REMARK 465 GLU A 162 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 3 CZ NH1 NH2 REMARK 470 LYS A 25 CD CE NZ REMARK 470 LYS A 26 NZ REMARK 470 ARG A 36 CZ NH1 NH2 REMARK 470 LYS A 40 NZ REMARK 470 ARG A 70 CZ NH1 NH2 REMARK 470 ILE A 76 CG1 CG2 CD1 REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 GLU A 84 CD OE1 OE2 REMARK 470 ILE A 129 CD1 REMARK 470 ASP A 131 OD1 REMARK 470 ASP A 150 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 15 112.98 -169.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 167 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 100 O REMARK 620 2 HOH A 235 O 109.4 REMARK 620 3 HOH A 239 O 89.6 97.5 REMARK 620 4 HOH A 251 O 162.2 87.5 82.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 168 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 169 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5879 RELATED DB: TARGETDB DBREF 3I4P A 1 162 UNP A9CIH8 A9CIH8_AGRT5 1 162 SEQRES 1 A 162 MSE ASP ARG LEU ASP ARG LYS ILE LEU ARG ILE LEU GLN SEQRES 2 A 162 GLU ASP SER THR LEU ALA VAL ALA ASP LEU ALA LYS LYS SEQRES 3 A 162 VAL GLY LEU SER THR THR PRO CYS TRP ARG ARG ILE GLN SEQRES 4 A 162 LYS MSE GLU GLU ASP GLY VAL ILE ARG ARG ARG VAL ALA SEQRES 5 A 162 LEU LEU ASP PRO VAL LYS VAL ASN THR LYS VAL THR VAL SEQRES 6 A 162 PHE VAL SER ILE ARG THR ALA SER HIS SER ILE GLU TRP SEQRES 7 A 162 LEU LYS ARG PHE SER GLU VAL VAL SER GLU PHE PRO GLU SEQRES 8 A 162 VAL VAL GLU PHE TYR ARG MSE SER GLY ASP VAL ASP TYR SEQRES 9 A 162 LEU LEU ARG VAL VAL VAL PRO ASP ILE ALA ALA TYR ASP SEQRES 10 A 162 ALA PHE TYR LYS ARG MSE ILE ALA LYS ILE GLU ILE ARG SEQRES 11 A 162 ASP VAL SER SER ALA PHE ALA MSE GLU GLN ILE LYS TYR SEQRES 12 A 162 THR THR GLU LEU PRO LEU ASP TYR MSE LEU LEU ASP ASN SEQRES 13 A 162 PRO LYS SER GLY GLU GLU MODRES 3I4P MSE A 1 MET SELENOMETHIONINE MODRES 3I4P MSE A 41 MET SELENOMETHIONINE MODRES 3I4P MSE A 98 MET SELENOMETHIONINE MODRES 3I4P MSE A 123 MET SELENOMETHIONINE MODRES 3I4P MSE A 138 MET SELENOMETHIONINE MODRES 3I4P MSE A 152 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 41 8 HET MSE A 98 8 HET MSE A 123 8 HET MSE A 138 8 HET MSE A 152 8 HET CL A 163 1 HET CL A 164 1 HET CL A 165 1 HET CL A 166 1 HET CA A 167 1 HET CL A 168 1 HET ACT A 169 4 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 CL 5(CL 1-) FORMUL 6 CA CA 2+ FORMUL 8 ACT C2 H3 O2 1- FORMUL 9 HOH *117(H2 O) HELIX 1 1 ASP A 2 GLN A 13 1 12 HELIX 2 2 ALA A 19 GLY A 28 1 10 HELIX 3 3 SER A 30 ASP A 44 1 15 HELIX 4 4 SER A 75 PHE A 89 1 15 HELIX 5 5 ASP A 112 ILE A 127 1 16 SHEET 1 A 4 VAL A 92 ARG A 97 0 SHEET 2 A 4 TYR A 104 VAL A 110 -1 O LEU A 105 N TYR A 96 SHEET 3 A 4 VAL A 63 ARG A 70 -1 N VAL A 63 O VAL A 110 SHEET 4 A 4 ASP A 131 PHE A 136 -1 O ALA A 135 N PHE A 66 LINK C MSE A 1 N ASP A 2 1555 1555 1.33 LINK C LYS A 40 N MSE A 41 1555 1555 1.33 LINK C MSE A 41 N GLU A 42 1555 1555 1.34 LINK C ARG A 97 N MSE A 98 1555 1555 1.33 LINK C MSE A 98 N SER A 99 1555 1555 1.33 LINK C ARG A 122 N MSE A 123 1555 1555 1.33 LINK C MSE A 123 N ILE A 124 1555 1555 1.33 LINK C ALA A 137 N MSE A 138 1555 1555 1.34 LINK C MSE A 138 N GLU A 139 1555 1555 1.33 LINK C TYR A 151 N MSE A 152 1555 1555 1.34 LINK C MSE A 152 N LEU A 153 1555 1555 1.33 LINK O GLY A 100 CA CA A 167 1555 1555 2.66 LINK CA CA A 167 O HOH A 235 1555 1555 2.39 LINK CA CA A 167 O HOH A 239 1555 1555 2.63 LINK CA CA A 167 O HOH A 251 1555 1555 2.49 SITE 1 AC1 2 ARG A 48 ARG A 49 SITE 1 AC2 3 ASP A 112 ILE A 113 HOH A 252 SITE 1 AC3 1 ARG A 50 SITE 1 AC4 1 SER A 16 SITE 1 AC5 7 GLY A 100 ASP A 103 VAL A 132 CL A 168 SITE 2 AC5 7 HOH A 235 HOH A 239 HOH A 251 SITE 1 AC6 4 SER A 99 GLY A 100 SER A 134 CA A 167 SITE 1 AC7 7 THR A 71 ASP A 103 ILE A 129 ARG A 130 SITE 2 AC7 7 ASP A 131 VAL A 132 HOH A 251 CRYST1 141.833 141.833 50.283 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007050 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007050 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019890 0.00000 HETATM 1 N MSE A 1 19.590 39.905 3.401 1.00 44.57 N HETATM 2 CA MSE A 1 20.944 40.549 3.458 1.00 44.64 C HETATM 3 C MSE A 1 21.534 40.717 4.858 1.00 43.02 C HETATM 4 O MSE A 1 22.532 40.091 5.171 1.00 42.47 O HETATM 5 CB MSE A 1 20.920 41.906 2.765 1.00 46.39 C HETATM 6 CG MSE A 1 21.675 41.942 1.465 1.00 49.72 C HETATM 7 SE MSE A 1 23.468 41.425 1.813 0.50 59.21 SE HETATM 8 CE MSE A 1 23.341 39.411 1.759 1.00 54.40 C