HEADER VIRAL PROTEIN/IMMUNE SYSTEM 03-JUL-09 3I50 TITLE CRYSTAL STRUCTURE OF THE WEST NILE VIRUS ENVELOPE GLYCOPROTEIN IN TITLE 2 COMPLEX WITH THE E53 ANTIBODY FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN; COMPND 3 CHAIN: E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MURINE KAPPA LIGHT CHAIN OF E53 MONOCLONAL ANTIBODY FAB; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MURINE HEAVY CHAIN (IGG3) OF E53 MONOCLONAL ANTIBODY FAB; COMPND 11 CHAIN: H; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: WEST NILE VIRUS; SOURCE 3 ORGANISM_TAXID: 11082; SOURCE 4 STRAIN: NY 1999; SOURCE 5 GENE: ENVELOPE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 STRAIN: BALB/C; SOURCE 16 CELL: HYBRIDOMA; SOURCE 17 GENE: LIGHT CHAIN OF E53 ANTIBODY; SOURCE 18 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 19 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 21 OTHER_DETAILS: B-CELL HYBRIDOMA CELLS; SOURCE 22 MOL_ID: 3; SOURCE 23 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 24 ORGANISM_COMMON: MOUSE; SOURCE 25 ORGANISM_TAXID: 10090; SOURCE 26 STRAIN: BALB/C; SOURCE 27 CELL: HYBRIDOMA; SOURCE 28 GENE: HEAVY CHAIN OF E53 ANTIBODY; SOURCE 29 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 30 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 31 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 32 OTHER_DETAILS: B-CELL HYBRIDOMA CELLS KEYWDS ANTIBODY, FAB, VIRUS, ENVELOPE, IMMUNOGLOBULIN, FUSION LOOP, KEYWDS 2 DISULFIDE BOND, ENVELOPE PROTEIN, MEMBRANE, TRANSMEMBRANE, VIRION, KEYWDS 3 VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.E.NYBAKKEN,J.T.WARREN,B.R.CHEN,C.A.NELSON,D.H.FREMONT REVDAT 2 25-SEP-13 3I50 1 REMARK VERSN REVDAT 1 27-OCT-09 3I50 0 JRNL AUTH M.V.CHERRIER,B.KAUFMANN,G.E.NYBAKKEN,S.M.LOK,J.T.WARREN, JRNL AUTH 2 B.R.CHEN,C.A.NELSON,V.A.KOSTYUCHENKO,H.A.HOLDAWAY, JRNL AUTH 3 P.R.CHIPMAN,R.J.KUHN,M.S.DIAMOND,M.G.ROSSMANN,D.H.FREMONT JRNL TITL STRUCTURAL BASIS FOR THE PREFERENTIAL RECOGNITION OF JRNL TITL 2 IMMATURE FLAVIVIRUSES BY A FUSION-LOOP ANTIBODY. JRNL REF EMBO J. V. 28 3269 2009 JRNL REFN ISSN 0261-4189 JRNL PMID 19713934 JRNL DOI 10.1038/EMBOJ.2009.245 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 20060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.344 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8580 - 5.7000 0.99 3028 167 0.2590 0.3690 REMARK 3 2 5.7000 - 4.5420 0.98 2882 172 0.2150 0.2990 REMARK 3 3 4.5420 - 3.9730 0.98 2800 157 0.2040 0.2830 REMARK 3 4 3.9730 - 3.6120 0.94 2700 156 0.2490 0.3750 REMARK 3 5 3.6120 - 3.3550 0.93 2650 123 0.2640 0.3950 REMARK 3 6 3.3550 - 3.1580 0.89 2575 116 0.2880 0.3860 REMARK 3 7 3.1580 - 3.0000 0.84 2399 135 0.3340 0.4000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 91.35 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.980 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 110.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 146.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -21.32700 REMARK 3 B22 (A**2) : -48.13900 REMARK 3 B33 (A**2) : 69.46500 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5412 REMARK 3 ANGLE : 0.858 7344 REMARK 3 CHIRALITY : 0.056 834 REMARK 3 PLANARITY : 0.003 926 REMARK 3 DIHEDRAL : 17.222 1892 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (chain E and (resid 7:51 or resid 134:195 or resid REMARK 3 284:297)) REMARK 3 ORIGIN FOR THE GROUP (A): -46.0399 36.9635 -0.4221 REMARK 3 T TENSOR REMARK 3 T11: 1.0325 T22: 0.9288 REMARK 3 T33: 1.2649 T12: 0.0227 REMARK 3 T13: 0.2988 T23: 0.2321 REMARK 3 L TENSOR REMARK 3 L11: 1.7944 L22: 1.2355 REMARK 3 L33: 1.3790 L12: 1.5795 REMARK 3 L13: -0.1857 L23: 0.1846 REMARK 3 S TENSOR REMARK 3 S11: -0.0921 S12: 0.0507 S13: 0.8501 REMARK 3 S21: 0.2253 S22: -0.0036 S23: 0.5995 REMARK 3 S31: 0.2445 S32: 0.0843 S33: 0.0534 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (chain E and (resid 52:133 or resid 196:283)) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0703 55.8659 -33.0326 REMARK 3 T TENSOR REMARK 3 T11: 0.6554 T22: 0.6554 REMARK 3 T33: 0.5607 T12: -0.0517 REMARK 3 T13: 0.0573 T23: 0.0934 REMARK 3 L TENSOR REMARK 3 L11: 1.2661 L22: 1.2075 REMARK 3 L33: 0.3852 L12: -0.0294 REMARK 3 L13: -0.1522 L23: -0.8339 REMARK 3 S TENSOR REMARK 3 S11: -0.0360 S12: -0.0671 S13: -0.2637 REMARK 3 S21: -0.3263 S22: 0.0747 S23: 0.2840 REMARK 3 S31: 0.3354 S32: 0.2872 S33: -0.0255 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (chain L and resid 1:107) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3345 87.0991 -52.5027 REMARK 3 T TENSOR REMARK 3 T11: 0.4644 T22: 0.4412 REMARK 3 T33: 0.2880 T12: -0.0087 REMARK 3 T13: -0.0622 T23: 0.0971 REMARK 3 L TENSOR REMARK 3 L11: 1.5336 L22: 3.6035 REMARK 3 L33: 2.6666 L12: -0.9357 REMARK 3 L13: -0.9173 L23: -1.5498 REMARK 3 S TENSOR REMARK 3 S11: -0.1164 S12: 0.2584 S13: 0.1412 REMARK 3 S21: -0.1119 S22: -0.2511 S23: -0.7379 REMARK 3 S31: 0.1331 S32: -0.6552 S33: 0.2980 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (chain L and resid 108:208) REMARK 3 ORIGIN FOR THE GROUP (A): 58.4047 95.8044 -38.3054 REMARK 3 T TENSOR REMARK 3 T11: 1.4888 T22: 0.8174 REMARK 3 T33: 2.4903 T12: 0.0746 REMARK 3 T13: -0.7929 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 0.4362 L22: 2.0054 REMARK 3 L33: 0.3548 L12: -2.3935 REMARK 3 L13: -0.0035 L23: -3.5376 REMARK 3 S TENSOR REMARK 3 S11: -0.7271 S12: -0.0368 S13: 1.1545 REMARK 3 S21: 0.2386 S22: -0.3141 S23: -1.9258 REMARK 3 S31: 0.1235 S32: -0.0001 S33: 0.9220 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (chain H and resid 1:111) REMARK 3 ORIGIN FOR THE GROUP (A): 29.7308 66.8675 -43.8165 REMARK 3 T TENSOR REMARK 3 T11: 0.3955 T22: 0.4036 REMARK 3 T33: 0.6273 T12: 0.0193 REMARK 3 T13: -0.2455 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 0.6360 L22: 6.0627 REMARK 3 L33: 3.8698 L12: 1.5187 REMARK 3 L13: 2.1023 L23: 1.3768 REMARK 3 S TENSOR REMARK 3 S11: 0.4137 S12: -0.0620 S13: -0.4321 REMARK 3 S21: 0.3702 S22: -0.0813 S23: -1.4672 REMARK 3 S31: 0.0826 S32: -0.3498 S33: -0.2604 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (chain H and resid 112:211) REMARK 3 ORIGIN FOR THE GROUP (A): 50.8197 83.8884 -27.4749 REMARK 3 T TENSOR REMARK 3 T11: 2.0255 T22: 0.6719 REMARK 3 T33: 2.1751 T12: 0.1620 REMARK 3 T13: -0.9576 T23: 0.2315 REMARK 3 L TENSOR REMARK 3 L11: 3.7977 L22: -1.8795 REMARK 3 L33: 3.6853 L12: 0.4765 REMARK 3 L13: -1.9769 L23: 1.0470 REMARK 3 S TENSOR REMARK 3 S11: -0.6818 S12: -0.1967 S13: -1.8421 REMARK 3 S21: 2.3494 S22: -0.5610 S23: -1.9043 REMARK 3 S31: 0.9013 S32: 0.2279 S33: 0.8886 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3I50 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-09. REMARK 100 THE RCSB ID CODE IS RCSB053971. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.240 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21428 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.450 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.39 REMARK 200 R MERGE FOR SHELL (I) : 0.45300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 300, 0.1 M MES, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 73.20500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 80.07000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 73.20500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 80.07000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE E 1 REMARK 465 ASN E 2 REMARK 465 CYS E 3 REMARK 465 LEU E 4 REMARK 465 GLY E 5 REMARK 465 MET E 6 REMARK 465 GLY E 145 REMARK 465 PRO E 146 REMARK 465 THR E 147 REMARK 465 THR E 148 REMARK 465 VAL E 149 REMARK 465 GLU E 150 REMARK 465 SER E 151 REMARK 465 HIS E 152 REMARK 465 GLY E 153 REMARK 465 ASN E 154 REMARK 465 TYR E 155 REMARK 465 SER E 156 REMARK 465 THR E 157 REMARK 465 GLN E 158 REMARK 465 VAL E 159 REMARK 465 GLY E 160 REMARK 465 ALA E 161 REMARK 465 THR E 162 REMARK 465 LYS E 298 REMARK 465 GLY E 299 REMARK 465 THR E 300 REMARK 465 THR E 301 REMARK 465 TYR E 302 REMARK 465 GLY E 303 REMARK 465 VAL E 304 REMARK 465 CYS E 305 REMARK 465 SER E 306 REMARK 465 LYS E 307 REMARK 465 ALA E 308 REMARK 465 PHE E 309 REMARK 465 LYS E 310 REMARK 465 PHE E 311 REMARK 465 LEU E 312 REMARK 465 GLY E 313 REMARK 465 THR E 314 REMARK 465 PRO E 315 REMARK 465 ALA E 316 REMARK 465 ASP E 317 REMARK 465 THR E 318 REMARK 465 GLY E 319 REMARK 465 HIS E 320 REMARK 465 GLY E 321 REMARK 465 THR E 322 REMARK 465 VAL E 323 REMARK 465 VAL E 324 REMARK 465 LEU E 325 REMARK 465 GLU E 326 REMARK 465 LEU E 327 REMARK 465 GLN E 328 REMARK 465 TYR E 329 REMARK 465 THR E 330 REMARK 465 GLY E 331 REMARK 465 THR E 332 REMARK 465 ASP E 333 REMARK 465 GLY E 334 REMARK 465 PRO E 335 REMARK 465 CYS E 336 REMARK 465 LYS E 337 REMARK 465 VAL E 338 REMARK 465 PRO E 339 REMARK 465 ILE E 340 REMARK 465 SER E 341 REMARK 465 SER E 342 REMARK 465 VAL E 343 REMARK 465 ALA E 344 REMARK 465 SER E 345 REMARK 465 LEU E 346 REMARK 465 ASN E 347 REMARK 465 ASP E 348 REMARK 465 LEU E 349 REMARK 465 THR E 350 REMARK 465 PRO E 351 REMARK 465 VAL E 352 REMARK 465 GLY E 353 REMARK 465 ARG E 354 REMARK 465 LEU E 355 REMARK 465 VAL E 356 REMARK 465 THR E 357 REMARK 465 VAL E 358 REMARK 465 ASN E 359 REMARK 465 PRO E 360 REMARK 465 PHE E 361 REMARK 465 VAL E 362 REMARK 465 SER E 363 REMARK 465 VAL E 364 REMARK 465 ALA E 365 REMARK 465 THR E 366 REMARK 465 ALA E 367 REMARK 465 ASN E 368 REMARK 465 ALA E 369 REMARK 465 LYS E 370 REMARK 465 VAL E 371 REMARK 465 LEU E 372 REMARK 465 ILE E 373 REMARK 465 GLU E 374 REMARK 465 LEU E 375 REMARK 465 GLU E 376 REMARK 465 PRO E 377 REMARK 465 PRO E 378 REMARK 465 PHE E 379 REMARK 465 GLY E 380 REMARK 465 ASP E 381 REMARK 465 SER E 382 REMARK 465 TYR E 383 REMARK 465 ILE E 384 REMARK 465 VAL E 385 REMARK 465 VAL E 386 REMARK 465 GLY E 387 REMARK 465 ARG E 388 REMARK 465 GLY E 389 REMARK 465 GLU E 390 REMARK 465 GLN E 391 REMARK 465 GLN E 392 REMARK 465 ILE E 393 REMARK 465 ASN E 394 REMARK 465 HIS E 395 REMARK 465 HIS E 396 REMARK 465 TRP E 397 REMARK 465 HIS E 398 REMARK 465 LYS E 399 REMARK 465 SER E 400 REMARK 465 GLY E 401 REMARK 465 SER E 402 REMARK 465 CYS H 128 REMARK 465 SER H 129 REMARK 465 ASP H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 SER H 134 REMARK 465 GLY H 212 REMARK 465 PRO H 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN E 8 31.65 -68.03 REMARK 500 ASP E 10 171.34 -52.80 REMARK 500 VAL E 15 149.57 -172.59 REMARK 500 SER E 16 91.17 -38.61 REMARK 500 THR E 19 34.34 -97.76 REMARK 500 GLU E 26 -161.33 -107.28 REMARK 500 ASP E 28 -37.43 -143.34 REMARK 500 LYS E 36 -80.19 -43.93 REMARK 500 ASN E 52 87.69 30.46 REMARK 500 ARG E 57 120.08 -178.83 REMARK 500 TYR E 61 18.65 -145.26 REMARK 500 LEU E 62 84.35 -164.46 REMARK 500 SER E 69 103.95 168.30 REMARK 500 CYS E 74 -175.09 -62.02 REMARK 500 MET E 77 14.85 -156.35 REMARK 500 ARG E 85 -1.80 -56.83 REMARK 500 ASN E 103 41.82 -144.34 REMARK 500 ILE E 113 139.56 -170.23 REMARK 500 ASN E 134 -8.69 -146.75 REMARK 500 ALA E 164 -141.85 -146.42 REMARK 500 TYR E 176 128.18 173.51 REMARK 500 PRO E 192 45.05 -83.19 REMARK 500 SER E 194 -150.68 -128.75 REMARK 500 ALA E 200 -11.11 -144.48 REMARK 500 ARG E 215 -93.54 18.55 REMARK 500 MET E 219 35.31 -79.26 REMARK 500 SER E 227 -133.95 -116.52 REMARK 500 GLU E 237 -34.40 -39.20 REMARK 500 PRO E 245 172.60 -55.58 REMARK 500 HIS E 246 104.65 -173.13 REMARK 500 ALA E 247 -56.43 -17.78 REMARK 500 THR E 248 -80.30 -59.38 REMARK 500 LYS E 249 -168.34 -127.52 REMARK 500 ALA E 261 12.24 -68.10 REMARK 500 LEU E 266 71.39 -154.04 REMARK 500 PHE E 274 42.86 -89.47 REMARK 500 SER E 275 106.42 -57.81 REMARK 500 LEU E 281 -162.00 -121.90 REMARK 500 THR E 282 -44.68 -146.89 REMARK 500 SER E 283 79.78 -68.10 REMARK 500 HIS E 285 150.31 179.83 REMARK 500 SER L 26 43.42 -80.03 REMARK 500 SER L 27 149.18 163.35 REMARK 500 SER L 40 118.07 -32.97 REMARK 500 PRO L 44 167.87 -40.46 REMARK 500 TRP L 47 -48.37 -135.76 REMARK 500 SER L 51 -48.41 75.37 REMARK 500 SER L 52 -12.10 -142.22 REMARK 500 ALA L 55 174.25 -56.00 REMARK 500 MET L 78 142.11 -36.15 REMARK 500 REMARK 500 THIS ENTRY HAS 86 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HG0 RELATED DB: PDB REMARK 900 STRUCTURE OF THE WEST NILE VIRUS ENVELOPE GLYCOPROTEIN REMARK 900 RELATED ID: 2I69 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE WEST NILE VIRUS ENVELOPE REMARK 900 GLYCOPROTEIN DBREF 3I50 E 1 402 UNP Q91R02 Q91R02_WNV 1 402 DBREF 3I50 L 1 208 PDB 3I50 3I50 1 208 DBREF 3I50 H 1 213 PDB 3I50 3I50 1 213 SEQRES 1 E 402 PHE ASN CYS LEU GLY MET SER ASN ARG ASP PHE LEU GLU SEQRES 2 E 402 GLY VAL SER GLY ALA THR TRP VAL ASP LEU VAL LEU GLU SEQRES 3 E 402 GLY ASP SER CYS VAL THR ILE MET SER LYS ASP LYS PRO SEQRES 4 E 402 THR ILE ASP VAL LYS MET MET ASN MET GLU ALA ALA ASN SEQRES 5 E 402 LEU ALA GLU VAL ARG SER TYR CYS TYR LEU ALA THR VAL SEQRES 6 E 402 SER ASP LEU SER THR LYS ALA ALA CYS PRO THR MET GLY SEQRES 7 E 402 GLU ALA HIS ASN ASP LYS ARG ALA ASP PRO ALA PHE VAL SEQRES 8 E 402 CYS ARG GLN GLY VAL VAL ASP ARG GLY TRP GLY ASN GLY SEQRES 9 E 402 CYS GLY LEU PHE GLY LYS GLY SER ILE ASP THR CYS ALA SEQRES 10 E 402 LYS PHE ALA CYS SER THR LYS ALA ILE GLY ARG THR ILE SEQRES 11 E 402 LEU LYS GLU ASN ILE LYS TYR GLU VAL ALA ILE PHE VAL SEQRES 12 E 402 HIS GLY PRO THR THR VAL GLU SER HIS GLY ASN TYR SER SEQRES 13 E 402 THR GLN VAL GLY ALA THR GLN ALA GLY ARG PHE SER ILE SEQRES 14 E 402 THR PRO ALA ALA PRO SER TYR THR LEU LYS LEU GLY GLU SEQRES 15 E 402 TYR GLY GLU VAL THR VAL ASP CYS GLU PRO ARG SER GLY SEQRES 16 E 402 ILE ASP THR ASN ALA TYR TYR VAL MET THR VAL GLY THR SEQRES 17 E 402 LYS THR PHE LEU VAL HIS ARG GLU TRP PHE MET ASP LEU SEQRES 18 E 402 ASN LEU PRO TRP SER SER ALA GLY SER THR VAL TRP ARG SEQRES 19 E 402 ASN ARG GLU THR LEU MET GLU PHE GLU GLU PRO HIS ALA SEQRES 20 E 402 THR LYS GLN SER VAL ILE ALA LEU GLY SER GLN GLU GLY SEQRES 21 E 402 ALA LEU HIS GLN ALA LEU ALA GLY ALA ILE PRO VAL GLU SEQRES 22 E 402 PHE SER SER ASN THR VAL LYS LEU THR SER GLY HIS LEU SEQRES 23 E 402 LYS CYS ARG VAL LYS MET GLU LYS LEU GLN LEU LYS GLY SEQRES 24 E 402 THR THR TYR GLY VAL CYS SER LYS ALA PHE LYS PHE LEU SEQRES 25 E 402 GLY THR PRO ALA ASP THR GLY HIS GLY THR VAL VAL LEU SEQRES 26 E 402 GLU LEU GLN TYR THR GLY THR ASP GLY PRO CYS LYS VAL SEQRES 27 E 402 PRO ILE SER SER VAL ALA SER LEU ASN ASP LEU THR PRO SEQRES 28 E 402 VAL GLY ARG LEU VAL THR VAL ASN PRO PHE VAL SER VAL SEQRES 29 E 402 ALA THR ALA ASN ALA LYS VAL LEU ILE GLU LEU GLU PRO SEQRES 30 E 402 PRO PHE GLY ASP SER TYR ILE VAL VAL GLY ARG GLY GLU SEQRES 31 E 402 GLN GLN ILE ASN HIS HIS TRP HIS LYS SER GLY SER SEQRES 1 L 207 GLN ILE VAL LEU THR ARG THR GLY GLY ILE MET SER ALA SEQRES 2 L 207 SER PRO GLY GLU LYS VAL THR MET THR CYS SER ALA SER SEQRES 3 L 207 SER SER VAL SER TYR MET HIS TRP TYR GLN GLN LYS SER SEQRES 4 L 207 GLY THR SER PRO LYS ILE TRP ILE TYR GLU SER SER LYS SEQRES 5 L 207 LEU ALA SER GLY VAL PRO VAL ARG PHE SER GLY SER GLY SEQRES 6 L 207 SER GLY THR SER TYR SER LEU THR ILE SER SER MET GLU SEQRES 7 L 207 ALA GLU ASP VAL ALA THR TYR TYR CYS GLN GLN TRP SER SEQRES 8 L 207 SER HIS PRO LEU THR PHE GLY ALA GLY THR LYS LEU GLU SEQRES 9 L 207 LEU LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE PHE SEQRES 10 L 207 PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SER SEQRES 11 L 207 VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP ILE SEQRES 12 L 207 ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN ASN SEQRES 13 L 207 GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS ASP SEQRES 14 L 207 SER THR TYR SER MET SER SER THR LEU THR LEU THR LYS SEQRES 15 L 207 ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU ALA SEQRES 16 L 207 THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 1 H 221 GLU VAL LYS LEU VAL GLU SER GLY GLY GLY LEU VAL LEU SEQRES 2 H 221 PRO GLY GLY SER LEU ARG LEU SER CYS ALA THR SER GLY SEQRES 3 H 221 PHE THR PHE THR ASP TYR TYR MET THR TRP VAL ARG GLN SEQRES 4 H 221 PRO PRO GLY LYS ALA LEU GLU TRP LEU GLY PHE ILE GLY SEQRES 5 H 221 ASN LYS ALA ASN ASP TYR THR THR GLU TYR SER ALA SER SEQRES 6 H 221 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASP SER GLN SEQRES 7 H 221 SER ILE LEU TYR LEU GLN MET SER THR LEU ARG ALA GLU SEQRES 8 H 221 ASP ARG ALA THR TYR TYR CYS ALA THR VAL TYR GLY ASN SEQRES 9 H 221 TYR PRO TYR PHE ASP VAL TRP GLY VAL GLY THR THR VAL SEQRES 10 H 221 ALA VAL SER SER ALA THR THR THR ALA PRO SER VAL TYR SEQRES 11 H 221 PRO LEU VAL PRO GLY CYS SER ASP THR SER GLY SER SER SEQRES 12 H 221 VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU SEQRES 13 H 221 PRO VAL THR VAL LYS TRP ASN TYR GLY ALA LEU SER SER SEQRES 14 H 221 GLY VAL ARG THR VAL SER SER VAL LEU GLN SER GLY PHE SEQRES 15 H 221 TYR SER LEU SER SER LEU VAL THR VAL PRO SER SER THR SEQRES 16 H 221 TRP PRO SER GLN THR VAL ILE CYS ASN VAL ALA HIS PRO SEQRES 17 H 221 ALA SER LYS VAL ASP LEU ILE LYS GLU ILE SER GLY PRO HELIX 1 1 ASN E 82 ASP E 87 5 6 HELIX 2 2 GLY E 100 GLY E 104 5 5 HELIX 3 3 LEU E 131 GLU E 133 5 3 HELIX 4 4 GLY E 181 TYR E 183 5 3 HELIX 5 5 ARG E 215 MET E 219 1 5 HELIX 6 6 ARG E 236 THR E 238 5 3 HELIX 7 7 GLN E 258 GLN E 264 1 7 HELIX 8 8 MET E 292 LEU E 295 5 4 HELIX 9 9 GLU L 79 VAL L 83 5 5 HELIX 10 10 SER L 121 LEU L 125 5 5 HELIX 11 11 THR H 28 TYR H 32 5 5 HELIX 12 12 ASN H 52A ASP H 54 5 5 SHEET 1 A 4 ARG E 9 GLU E 13 0 SHEET 2 A 4 CYS E 30 MET E 34 1 O THR E 32 N LEU E 12 SHEET 3 A 4 ILE E 41 ALA E 51 -1 O VAL E 43 N VAL E 31 SHEET 4 A 4 ILE E 135 ILE E 141 -1 O GLU E 138 N ASN E 47 SHEET 1 B 4 ARG E 9 GLU E 13 0 SHEET 2 B 4 CYS E 30 MET E 34 1 O THR E 32 N LEU E 12 SHEET 3 B 4 ILE E 41 ALA E 51 -1 O VAL E 43 N VAL E 31 SHEET 4 B 4 THR E 278 LYS E 280 -1 O VAL E 279 N ALA E 50 SHEET 1 C 4 ASP E 22 VAL E 24 0 SHEET 2 C 4 LYS E 287 LYS E 291 -1 O CYS E 288 N LEU E 23 SHEET 3 C 4 GLU E 185 ASP E 189 -1 N THR E 187 O LYS E 291 SHEET 4 C 4 LEU E 178 LYS E 179 -1 N LEU E 178 O VAL E 186 SHEET 1 D 2 ALA E 54 CYS E 60 0 SHEET 2 D 2 LYS E 124 THR E 129 -1 O ALA E 125 N TYR E 59 SHEET 1 E 3 ALA E 63 ALA E 73 0 SHEET 2 E 3 GLY E 109 CYS E 121 -1 O ALA E 120 N THR E 64 SHEET 3 E 3 PHE E 90 ARG E 99 -1 N VAL E 91 O ALA E 117 SHEET 1 F 2 TYR E 201 THR E 205 0 SHEET 2 F 2 THR E 210 HIS E 214 -1 O PHE E 211 N MET E 204 SHEET 1 G 2 MET E 240 PHE E 242 0 SHEET 2 G 2 VAL E 252 ALA E 254 -1 O ILE E 253 N GLU E 241 SHEET 1 H 4 LEU L 4 THR L 7 0 SHEET 2 H 4 VAL L 19 ALA L 25 -1 O THR L 22 N THR L 7 SHEET 3 H 4 SER L 70 ILE L 75 -1 O TYR L 71 N CYS L 23 SHEET 4 H 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 I 6 ILE L 10 ALA L 13 0 SHEET 2 I 6 THR L 102 LEU L 106 1 O GLU L 105 N MET L 11 SHEET 3 I 6 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 I 6 MET L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 I 6 LYS L 45 TYR L 49 -1 O ILE L 48 N TRP L 35 SHEET 6 I 6 LYS L 53 LEU L 54 -1 O LYS L 53 N TYR L 49 SHEET 1 J 4 ILE L 10 ALA L 13 0 SHEET 2 J 4 THR L 102 LEU L 106 1 O GLU L 105 N MET L 11 SHEET 3 J 4 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 J 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 K 4 THR L 114 PHE L 118 0 SHEET 2 K 4 VAL L 133 ASN L 137 -1 O PHE L 135 N SER L 116 SHEET 3 K 4 SER L 174 LEU L 179 -1 O MET L 175 N LEU L 136 SHEET 4 K 4 VAL L 159 ASN L 161 -1 N LEU L 160 O THR L 178 SHEET 1 L 4 LYS H 3 SER H 7 0 SHEET 2 L 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 L 4 ILE H 77 MET H 82 -1 O LEU H 78 N CYS H 22 SHEET 4 L 4 PHE H 67 ASP H 72 -1 N ASP H 72 O ILE H 77 SHEET 1 M 6 LEU H 11 VAL H 12 0 SHEET 2 M 6 THR H 107 VAL H 111 1 O ALA H 110 N VAL H 12 SHEET 3 M 6 ALA H 88 TYR H 96 -1 N TYR H 90 O THR H 107 SHEET 4 M 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 M 6 GLU H 46 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 M 6 THR H 57 TYR H 59 -1 O GLU H 58 N PHE H 50 SHEET 1 N 4 LEU H 11 VAL H 12 0 SHEET 2 N 4 THR H 107 VAL H 111 1 O ALA H 110 N VAL H 12 SHEET 3 N 4 ALA H 88 TYR H 96 -1 N TYR H 90 O THR H 107 SHEET 4 N 4 TYR H 100A PHE H 100B-1 O TYR H 100A N TYR H 96 SHEET 1 O 3 SER H 120 PRO H 123 0 SHEET 2 O 3 CYS H 140 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 O 3 TYR H 175 LEU H 177 -1 O TYR H 175 N TYR H 145 SHEET 1 P 3 THR H 151 TRP H 154 0 SHEET 2 P 3 CYS H 195 HIS H 199 -1 O ALA H 198 N THR H 151 SHEET 3 P 3 VAL H 204 ASP H 205 -1 O VAL H 204 N HIS H 199 SSBOND 1 CYS E 60 CYS E 121 1555 1555 2.05 SSBOND 2 CYS E 74 CYS E 105 1555 1555 2.03 SSBOND 3 CYS E 92 CYS E 116 1555 1555 2.04 SSBOND 4 CYS E 190 CYS E 288 1555 1555 2.04 SSBOND 5 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 6 CYS L 134 CYS L 194 1555 1555 2.04 SSBOND 7 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 8 CYS H 140 CYS H 195 1555 1555 2.03 CISPEP 1 HIS L 94 PRO L 95 0 4.40 CISPEP 2 TYR L 140 PRO L 141 0 0.66 CISPEP 3 PHE H 146 PRO H 147 0 -1.84 CISPEP 4 GLU H 148 PRO H 149 0 0.29 CISPEP 5 TRP H 188 PRO H 189 0 -2.79 CRYST1 146.410 160.140 43.880 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006830 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006245 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022788 0.00000