HEADER TRANSFERASE 06-JUL-09 3I60
TITLE CRYSTAL STRUCTURE OF ERK2 BOUND TO (S)-4-(2-(2-CHLOROPHENYLAMINO)-5-
TITLE 2 METHYLPYRIMIDIN-4-YL)-N-(2-HYDROXY-1-PHENYLETHYL)-1H-PYRROLE-2-
TITLE 3 CARBOXAMIDE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: EXTRACELLULAR SIGNAL-REGULATED KINASE 2, ERK-2, MITOGEN-
COMPND 5 ACTIVATED PROTEIN KINASE 2, MAP KINASE 2, MAPK 2, P42-MAPK, ERT1;
COMPND 6 EC: 2.7.11.24;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: ERK2, MAPK1, PRKM1, PRKM2;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT7BLUE
KEYWDS KINASE, INHIBITOR, ATP-BINDING, CELL CYCLE, HOST-VIRUS INTERACTION,
KEYWDS 2 NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, SERINE/THREONINE-PROTEIN KINASE,
KEYWDS 3 TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR M.D.JACOBS,X.XIE
REVDAT 5 03-APR-24 3I60 1 REMARK
REVDAT 4 21-FEB-24 3I60 1 REMARK SEQADV
REVDAT 3 01-NOV-17 3I60 1 REMARK
REVDAT 2 13-JUL-11 3I60 1 VERSN
REVDAT 1 12-JAN-10 3I60 0
JRNL AUTH A.M.ARONOV,Q.TANG,G.MARTINEZ-BOTELLA,G.W.BEMIS,J.CAO,G.CHEN,
JRNL AUTH 2 N.P.EWING,P.J.FORD,U.A.GERMANN,J.GREEN,M.R.HALE,M.JACOBS,
JRNL AUTH 3 J.W.JANETKA,F.MALTAIS,W.MARKLAND,M.N.NAMCHUK,S.NANTHAKUMAR,
JRNL AUTH 4 S.POONDRU,J.STRAUB,E.TER HAAR,X.XIE
JRNL TITL STRUCTURE-GUIDED DESIGN OF POTENT AND SELECTIVE
JRNL TITL 2 PYRIMIDYLPYRROLE INHIBITORS OF EXTRACELLULAR
JRNL TITL 3 SIGNAL-REGULATED KINASE (ERK) USING CONFORMATIONAL CONTROL.
JRNL REF J.MED.CHEM. V. 52 6362 2009
JRNL REFN ISSN 0022-2623
JRNL PMID 19827834
JRNL DOI 10.1021/JM900630Q
REMARK 2
REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0
REMARK 3 NUMBER OF REFLECTIONS : 12498
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.211
REMARK 3 R VALUE (WORKING SET) : 0.207
REMARK 3 FREE R VALUE : 0.248
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.100
REMARK 3 FREE R VALUE TEST SET COUNT : 1014
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56
REMARK 3 REFLECTION IN BIN (WORKING SET) : 765
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.14
REMARK 3 BIN R VALUE (WORKING SET) : 0.2620
REMARK 3 BIN FREE R VALUE SET COUNT : 66
REMARK 3 BIN FREE R VALUE : 0.3120
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2732
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 47
REMARK 3 SOLVENT ATOMS : 131
REMARK 3
REMARK 3 B VALUES.
REMARK 3 B VALUE TYPE : LIKELY RESIDUAL
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.63
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.12000
REMARK 3 B22 (A**2) : -0.04000
REMARK 3 B33 (A**2) : -0.08000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): NULL
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.329
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.182
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.265
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2843 ; 0.008 ; 0.022
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3852 ; 1.053 ; 1.993
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 5.172 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;37.633 ;24.074
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 502 ;14.889 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.296 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 417 ; 0.074 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2150 ; 0.004 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1677 ; 0.547 ; 1.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2720 ; 1.033 ; 2.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1166 ; 1.277 ; 3.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1132 ; 2.190 ; 4.500
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 3
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 6 A 356
REMARK 3 RESIDUE RANGE : A 401 A 404
REMARK 3 RESIDUE RANGE : A 359 A 493
REMARK 3 ORIGIN FOR THE GROUP (A): 15.3815 2.9797 39.7697
REMARK 3 T TENSOR
REMARK 3 T11: 0.0404 T22: 0.0168
REMARK 3 T33: 0.0328 T12: -0.0007
REMARK 3 T13: -0.0018 T23: -0.0070
REMARK 3 L TENSOR
REMARK 3 L11: 0.6836 L22: 0.3121
REMARK 3 L33: 1.9066 L12: -0.1608
REMARK 3 L13: -0.2221 L23: -0.6300
REMARK 3 S TENSOR
REMARK 3 S11: 0.0137 S12: -0.0662 S13: -0.0099
REMARK 3 S21: -0.0150 S22: -0.0337 S23: 0.0020
REMARK 3 S31: -0.0461 S32: 0.1384 S33: 0.0201
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.40
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE
REMARK 3 RIDING POSITIONS. 2. U VALUES: RESIDUAL ONLY.
REMARK 4
REMARK 4 3I60 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-09.
REMARK 100 THE DEPOSITION ID IS D_1000054007.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 15-NOV-01
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.2
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : RIGAKU
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.54
REMARK 200 MONOCHROMATOR : NI FILTER
REMARK 200 OPTICS : YALE MIRRORS
REMARK 200
REMARK 200 DETECTOR TYPE : IMAGE PLATE
REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12882
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500
REMARK 200 RESOLUTION RANGE LOW (A) : 55.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : 0.05600
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.3000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57
REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 0.32900
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS
REMARK 200 SOFTWARE USED: CNS
REMARK 200 STARTING MODEL: IN-HOUSE UNPUBLISHED STRUCTURE
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 42.03
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 14 MG/ML, 20 MM TRIS-HCL PH
REMARK 280 7.0, 5 MM DTT, 200 MM NACL. PRECIPITANT: 100 MM HEPES PH 7.2, 28-
REMARK 280 30% PEG MME 2000, 200 MM AMMONIUM SULFATE, 20 MM 2-
REMARK 280 MERCAPTOETHANOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.03050
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.79900
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.12550
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.79900
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.03050
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.12550
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -21
REMARK 465 GLY A -20
REMARK 465 SER A -19
REMARK 465 SER A -18
REMARK 465 HIS A -17
REMARK 465 HIS A -16
REMARK 465 HIS A -15
REMARK 465 HIS A -14
REMARK 465 HIS A -13
REMARK 465 HIS A -12
REMARK 465 SER A -11
REMARK 465 SER A -10
REMARK 465 GLY A -9
REMARK 465 LEU A -8
REMARK 465 VAL A -7
REMARK 465 PRO A -6
REMARK 465 ARG A -5
REMARK 465 GLY A -4
REMARK 465 SER A -3
REMARK 465 HIS A -2
REMARK 465 MET A -1
REMARK 465 ALA A 0
REMARK 465 ALA A 1
REMARK 465 ALA A 2
REMARK 465 ALA A 3
REMARK 465 ALA A 4
REMARK 465 ALA A 5
REMARK 465 PRO A 174
REMARK 465 ASP A 175
REMARK 465 HIS A 176
REMARK 465 ASP A 177
REMARK 465 HIS A 178
REMARK 465 THR A 179
REMARK 465 GLY A 180
REMARK 465 PHE A 181
REMARK 465 LEU A 182
REMARK 465 THR A 183
REMARK 465 GLU A 184
REMARK 465 TYR A 185
REMARK 465 VAL A 186
REMARK 465 SER A 200
REMARK 465 LYS A 201
REMARK 465 GLY A 202
REMARK 465 ARG A 357
REMARK 465 SER A 358
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 VAL A 19 37.58 -99.78
REMARK 500 ASP A 86 149.53 -170.12
REMARK 500 ARG A 146 -3.42 79.23
REMARK 500 ASP A 147 36.02 -149.28
REMARK 500 ASP A 165 79.85 63.30
REMARK 500 CYS A 252 41.57 -150.66
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE E86 A 401
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3I5Z RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF ERK2 BOUND TO (S)-N-(2-HYDROXY-1-PHENYLETHYL)-
REMARK 900 4-(5-METHYL-2-(PHENYLAMINO)PYRIMIDIN-4-YL)-1H-PYRROLE-2-CARBOXAMIDE
DBREF 3I60 A -1 358 UNP P28482 MK01_HUMAN 1 360
SEQADV 3I60 MET A -21 UNP P28482 EXPRESSION TAG
SEQADV 3I60 GLY A -20 UNP P28482 EXPRESSION TAG
SEQADV 3I60 SER A -19 UNP P28482 EXPRESSION TAG
SEQADV 3I60 SER A -18 UNP P28482 EXPRESSION TAG
SEQADV 3I60 HIS A -17 UNP P28482 EXPRESSION TAG
SEQADV 3I60 HIS A -16 UNP P28482 EXPRESSION TAG
SEQADV 3I60 HIS A -15 UNP P28482 EXPRESSION TAG
SEQADV 3I60 HIS A -14 UNP P28482 EXPRESSION TAG
SEQADV 3I60 HIS A -13 UNP P28482 EXPRESSION TAG
SEQADV 3I60 HIS A -12 UNP P28482 EXPRESSION TAG
SEQADV 3I60 SER A -11 UNP P28482 EXPRESSION TAG
SEQADV 3I60 SER A -10 UNP P28482 EXPRESSION TAG
SEQADV 3I60 GLY A -9 UNP P28482 EXPRESSION TAG
SEQADV 3I60 LEU A -8 UNP P28482 EXPRESSION TAG
SEQADV 3I60 VAL A -7 UNP P28482 EXPRESSION TAG
SEQADV 3I60 PRO A -6 UNP P28482 EXPRESSION TAG
SEQADV 3I60 ARG A -5 UNP P28482 EXPRESSION TAG
SEQADV 3I60 GLY A -4 UNP P28482 EXPRESSION TAG
SEQADV 3I60 SER A -3 UNP P28482 EXPRESSION TAG
SEQADV 3I60 HIS A -2 UNP P28482 EXPRESSION TAG
SEQRES 1 A 380 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 A 380 LEU VAL PRO ARG GLY SER HIS MET ALA ALA ALA ALA ALA
SEQRES 3 A 380 ALA GLY ALA GLY PRO GLU MET VAL ARG GLY GLN VAL PHE
SEQRES 4 A 380 ASP VAL GLY PRO ARG TYR THR ASN LEU SER TYR ILE GLY
SEQRES 5 A 380 GLU GLY ALA TYR GLY MET VAL CYS SER ALA TYR ASP ASN
SEQRES 6 A 380 VAL ASN LYS VAL ARG VAL ALA ILE LYS LYS ILE SER PRO
SEQRES 7 A 380 PHE GLU HIS GLN THR TYR CYS GLN ARG THR LEU ARG GLU
SEQRES 8 A 380 ILE LYS ILE LEU LEU ARG PHE ARG HIS GLU ASN ILE ILE
SEQRES 9 A 380 GLY ILE ASN ASP ILE ILE ARG ALA PRO THR ILE GLU GLN
SEQRES 10 A 380 MET LYS ASP VAL TYR ILE VAL GLN ASP LEU MET GLU THR
SEQRES 11 A 380 ASP LEU TYR LYS LEU LEU LYS THR GLN HIS LEU SER ASN
SEQRES 12 A 380 ASP HIS ILE CYS TYR PHE LEU TYR GLN ILE LEU ARG GLY
SEQRES 13 A 380 LEU LYS TYR ILE HIS SER ALA ASN VAL LEU HIS ARG ASP
SEQRES 14 A 380 LEU LYS PRO SER ASN LEU LEU LEU ASN THR THR CYS ASP
SEQRES 15 A 380 LEU LYS ILE CYS ASP PHE GLY LEU ALA ARG VAL ALA ASP
SEQRES 16 A 380 PRO ASP HIS ASP HIS THR GLY PHE LEU THR GLU TYR VAL
SEQRES 17 A 380 ALA THR ARG TRP TYR ARG ALA PRO GLU ILE MET LEU ASN
SEQRES 18 A 380 SER LYS GLY TYR THR LYS SER ILE ASP ILE TRP SER VAL
SEQRES 19 A 380 GLY CYS ILE LEU ALA GLU MET LEU SER ASN ARG PRO ILE
SEQRES 20 A 380 PHE PRO GLY LYS HIS TYR LEU ASP GLN LEU ASN HIS ILE
SEQRES 21 A 380 LEU GLY ILE LEU GLY SER PRO SER GLN GLU ASP LEU ASN
SEQRES 22 A 380 CYS ILE ILE ASN LEU LYS ALA ARG ASN TYR LEU LEU SER
SEQRES 23 A 380 LEU PRO HIS LYS ASN LYS VAL PRO TRP ASN ARG LEU PHE
SEQRES 24 A 380 PRO ASN ALA ASP SER LYS ALA LEU ASP LEU LEU ASP LYS
SEQRES 25 A 380 MET LEU THR PHE ASN PRO HIS LYS ARG ILE GLU VAL GLU
SEQRES 26 A 380 GLN ALA LEU ALA HIS PRO TYR LEU GLU GLN TYR TYR ASP
SEQRES 27 A 380 PRO SER ASP GLU PRO ILE ALA GLU ALA PRO PHE LYS PHE
SEQRES 28 A 380 ASP MET GLU LEU ASP ASP LEU PRO LYS GLU LYS LEU LYS
SEQRES 29 A 380 GLU LEU ILE PHE GLU GLU THR ALA ARG PHE GLN PRO GLY
SEQRES 30 A 380 TYR ARG SER
HET SO4 A 402 5
HET SO4 A 403 5
HET SO4 A 404 5
HET E86 A 401 32
HETNAM SO4 SULFATE ION
HETNAM E86 4-{2-[(2-CHLOROPHENYL)AMINO]-5-METHYLPYRIMIDIN-4-YL}-N-
HETNAM 2 E86 [(1S)-2-HYDROXY-1-PHENYLETHYL]-1H-PYRROLE-2-
HETNAM 3 E86 CARBOXAMIDE
FORMUL 2 SO4 3(O4 S 2-)
FORMUL 5 E86 C24 H22 CL N5 O2
FORMUL 6 HOH *131(H2 O)
HELIX 1 1 HIS A 59 PHE A 76 1 18
HELIX 2 2 LEU A 110 GLN A 117 1 8
HELIX 3 3 SER A 120 ALA A 141 1 22
HELIX 4 4 LYS A 149 SER A 151 5 3
HELIX 5 5 THR A 188 ARG A 192 5 5
HELIX 6 6 ALA A 193 LEU A 198 1 6
HELIX 7 7 LYS A 205 ASN A 222 1 18
HELIX 8 8 HIS A 230 GLY A 243 1 14
HELIX 9 9 SER A 246 ASN A 251 1 6
HELIX 10 10 ASN A 255 LEU A 265 1 11
HELIX 11 11 PRO A 272 PHE A 277 1 6
HELIX 12 12 ASP A 281 LEU A 292 1 12
HELIX 13 13 GLU A 301 ALA A 307 1 7
HELIX 14 14 HIS A 308 GLU A 312 5 5
HELIX 15 15 ASP A 316 GLU A 320 5 5
HELIX 16 16 GLU A 332 LEU A 336 5 5
HELIX 17 17 PRO A 337 THR A 349 1 13
HELIX 18 18 ALA A 350 GLN A 353 5 4
SHEET 1 A 2 GLU A 10 VAL A 12 0
SHEET 2 A 2 GLN A 15 PHE A 17 -1 O GLN A 15 N VAL A 12
SHEET 1 B 5 TYR A 23 GLU A 31 0
SHEET 2 B 5 GLY A 35 ASP A 42 -1 O TYR A 41 N THR A 24
SHEET 3 B 5 VAL A 47 ILE A 54 -1 O ILE A 51 N CYS A 38
SHEET 4 B 5 VAL A 99 ASP A 104 -1 O ILE A 101 N LYS A 52
SHEET 5 B 5 ASP A 86 ARG A 89 -1 N ASP A 86 O VAL A 102
SHEET 1 C 3 THR A 108 ASP A 109 0
SHEET 2 C 3 LEU A 153 LEU A 155 -1 O LEU A 155 N THR A 108
SHEET 3 C 3 LEU A 161 ILE A 163 -1 O LYS A 162 N LEU A 154
SHEET 1 D 2 VAL A 143 LEU A 144 0
SHEET 2 D 2 ARG A 170 VAL A 171 -1 O ARG A 170 N LEU A 144
SITE 1 AC1 3 ARG A 189 ARG A 192 TYR A 231
SITE 1 AC2 5 LYS A 46 HIS A 267 LYS A 340 HOH A 429
SITE 2 AC2 5 HOH A 481
SITE 1 AC3 3 ARG A 13 SER A 27 TYR A 28
SITE 1 AC4 18 GLY A 32 GLY A 35 MET A 36 VAL A 37
SITE 2 AC4 18 ALA A 50 LYS A 52 ILE A 54 GLN A 103
SITE 3 AC4 18 ASP A 104 MET A 106 ASP A 109 LYS A 112
SITE 4 AC4 18 ASN A 152 LEU A 154 ASP A 165 HOH A 364
SITE 5 AC4 18 HOH A 391 HOH A 455
CRYST1 44.061 70.251 119.598 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.022696 0.000000 0.000000 0.00000
SCALE2 0.000000 0.014235 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008361 0.00000