HEADER OXIDOREDUCTASE 06-JUL-09 3I65 TITLE PLASMODIUM FALCIPARUM DIHYDROOROTATE DEHYDROGENASE BOUND WITH TITLE 2 TRIAZOLOPYRIMIDINE-BASED INHIBITOR DSM1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROOROTATE DEHYDROGENASE HOMOLOG, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 158-569 WITH 384-413 DELETED; COMPND 5 SYNONYM: DHODEHASE, DIHYDROOROTATE OXIDASE; COMPND 6 EC: 1.3.3.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM 3D7; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 GENE: PFF0160C, PLASMODIUM FALCIPARUM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS PLASMODIUM FALCIPARUM, DIHYDROOROTATE DEHYDROGENASE, KEYWDS 2 TRIAZOLOPYRIMIDINE, INHIBITOR, DSM1, FAD, FLAVOPROTEIN, MEMBRANE, KEYWDS 3 MITOCHONDRION, MITOCHONDRION INNER MEMBRANE, OXIDOREDUCTASE, KEYWDS 4 PYRIMIDINE BIOSYNTHESIS, TRANSIT PEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR X.DENG,M.A.PHILLIPS REVDAT 3 06-SEP-23 3I65 1 REMARK SEQADV REVDAT 2 20-OCT-09 3I65 1 JRNL REVDAT 1 28-JUL-09 3I65 0 JRNL AUTH X.DENG,R.GUJJAR,F.EL MAZOUNI,W.KAMINSKY,N.A.MALMQUIST, JRNL AUTH 2 E.J.GOLDSMITH,P.K.RATHOD,M.A.PHILLIPS JRNL TITL STRUCTURAL PLASTICITY OF MALARIA DIHYDROOROTATE JRNL TITL 2 DEHYDROGENASE ALLOWS SELECTIVE BINDING OF DIVERSE CHEMICAL JRNL TITL 3 SCAFFOLDS. JRNL REF J.BIOL.CHEM. V. 284 26999 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19640844 JRNL DOI 10.1074/JBC.M109.028589 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.500 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 37754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.100 REMARK 3 FREE R VALUE TEST SET COUNT : 802 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1114 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2934 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 79 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.22000 REMARK 3 B22 (A**2) : 1.22000 REMARK 3 B33 (A**2) : -1.83000 REMARK 3 B12 (A**2) : 0.61000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.209 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3068 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4135 ; 1.308 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 369 ; 6.367 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;37.658 ;25.515 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 567 ;15.240 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;21.719 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 456 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2252 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1401 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2120 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 136 ; 0.131 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.322 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.081 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1906 ; 0.816 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2965 ; 1.383 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1386 ; 1.747 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1169 ; 2.728 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3I65 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054012. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : HIGH-RESOLUTION DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42194 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 45.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1TV5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE, PH 4.6, 18-20% PEG4000, 25% GLYCEROL, AND 10 MM DTT, REMARK 280 EVAPORATION, TEMPERATURE 293K, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.11733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.23467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.11733 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.23467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 88 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 125 REMARK 465 GLY A 126 REMARK 465 SER A 127 REMARK 465 SER A 128 REMARK 465 HIS A 129 REMARK 465 HIS A 130 REMARK 465 HIS A 131 REMARK 465 HIS A 132 REMARK 465 HIS A 133 REMARK 465 HIS A 134 REMARK 465 SER A 135 REMARK 465 SER A 136 REMARK 465 GLY A 137 REMARK 465 LEU A 138 REMARK 465 VAL A 139 REMARK 465 PRO A 140 REMARK 465 ARG A 141 REMARK 465 GLY A 142 REMARK 465 SER A 143 REMARK 465 HIS A 144 REMARK 465 MET A 145 REMARK 465 ALA A 146 REMARK 465 SER A 147 REMARK 465 MET A 148 REMARK 465 THR A 149 REMARK 465 GLY A 150 REMARK 465 GLY A 151 REMARK 465 GLN A 152 REMARK 465 GLN A 153 REMARK 465 GLY A 154 REMARK 465 ARG A 155 REMARK 465 ASP A 156 REMARK 465 PRO A 157 REMARK 465 PHE A 158 REMARK 465 GLU A 159 REMARK 465 THR A 348 REMARK 465 PRO A 349 REMARK 465 GLY A 350 REMARK 465 LEU A 351 REMARK 465 ARG A 352 REMARK 465 ASP A 353 REMARK 465 ASN A 354 REMARK 465 GLN A 355 REMARK 465 LYS A 568 REMARK 465 SER A 569 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 213 -127.91 48.73 REMARK 500 TYR A 528 -66.60 -137.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE JZ8 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ORO A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 1004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I68 RELATED DB: PDB REMARK 900 RELATED ID: 3I6R RELATED DB: PDB DBREF 3I65 A 158 569 UNP Q08210 PYRD_PLAF7 158 569 SEQADV 3I65 MET A 125 UNP Q08210 EXPRESSION TAG SEQADV 3I65 GLY A 126 UNP Q08210 EXPRESSION TAG SEQADV 3I65 SER A 127 UNP Q08210 EXPRESSION TAG SEQADV 3I65 SER A 128 UNP Q08210 EXPRESSION TAG SEQADV 3I65 HIS A 129 UNP Q08210 EXPRESSION TAG SEQADV 3I65 HIS A 130 UNP Q08210 EXPRESSION TAG SEQADV 3I65 HIS A 131 UNP Q08210 EXPRESSION TAG SEQADV 3I65 HIS A 132 UNP Q08210 EXPRESSION TAG SEQADV 3I65 HIS A 133 UNP Q08210 EXPRESSION TAG SEQADV 3I65 HIS A 134 UNP Q08210 EXPRESSION TAG SEQADV 3I65 SER A 135 UNP Q08210 EXPRESSION TAG SEQADV 3I65 SER A 136 UNP Q08210 EXPRESSION TAG SEQADV 3I65 GLY A 137 UNP Q08210 EXPRESSION TAG SEQADV 3I65 LEU A 138 UNP Q08210 EXPRESSION TAG SEQADV 3I65 VAL A 139 UNP Q08210 EXPRESSION TAG SEQADV 3I65 PRO A 140 UNP Q08210 EXPRESSION TAG SEQADV 3I65 ARG A 141 UNP Q08210 EXPRESSION TAG SEQADV 3I65 GLY A 142 UNP Q08210 EXPRESSION TAG SEQADV 3I65 SER A 143 UNP Q08210 EXPRESSION TAG SEQADV 3I65 HIS A 144 UNP Q08210 EXPRESSION TAG SEQADV 3I65 MET A 145 UNP Q08210 EXPRESSION TAG SEQADV 3I65 ALA A 146 UNP Q08210 EXPRESSION TAG SEQADV 3I65 SER A 147 UNP Q08210 EXPRESSION TAG SEQADV 3I65 MET A 148 UNP Q08210 EXPRESSION TAG SEQADV 3I65 THR A 149 UNP Q08210 EXPRESSION TAG SEQADV 3I65 GLY A 150 UNP Q08210 EXPRESSION TAG SEQADV 3I65 GLY A 151 UNP Q08210 EXPRESSION TAG SEQADV 3I65 GLN A 152 UNP Q08210 EXPRESSION TAG SEQADV 3I65 GLN A 153 UNP Q08210 EXPRESSION TAG SEQADV 3I65 GLY A 154 UNP Q08210 EXPRESSION TAG SEQADV 3I65 ARG A 155 UNP Q08210 EXPRESSION TAG SEQADV 3I65 ASP A 156 UNP Q08210 EXPRESSION TAG SEQADV 3I65 PRO A 157 UNP Q08210 EXPRESSION TAG SEQADV 3I65 A UNP Q08210 SER 384 DELETION SEQADV 3I65 A UNP Q08210 THR 385 DELETION SEQADV 3I65 A UNP Q08210 TYR 386 DELETION SEQADV 3I65 A UNP Q08210 ASN 387 DELETION SEQADV 3I65 A UNP Q08210 GLU 388 DELETION SEQADV 3I65 A UNP Q08210 ASP 389 DELETION SEQADV 3I65 A UNP Q08210 ASN 390 DELETION SEQADV 3I65 A UNP Q08210 LYS 391 DELETION SEQADV 3I65 A UNP Q08210 ILE 392 DELETION SEQADV 3I65 A UNP Q08210 VAL 393 DELETION SEQADV 3I65 A UNP Q08210 GLU 394 DELETION SEQADV 3I65 A UNP Q08210 LYS 395 DELETION SEQADV 3I65 A UNP Q08210 LYS 396 DELETION SEQADV 3I65 A UNP Q08210 ASN 397 DELETION SEQADV 3I65 A UNP Q08210 ASN 398 DELETION SEQADV 3I65 A UNP Q08210 PHE 399 DELETION SEQADV 3I65 A UNP Q08210 ASN 400 DELETION SEQADV 3I65 A UNP Q08210 LYS 401 DELETION SEQADV 3I65 A UNP Q08210 ASN 402 DELETION SEQADV 3I65 A UNP Q08210 ASN 403 DELETION SEQADV 3I65 A UNP Q08210 SER 404 DELETION SEQADV 3I65 A UNP Q08210 HIS 405 DELETION SEQADV 3I65 A UNP Q08210 MET 406 DELETION SEQADV 3I65 A UNP Q08210 MET 407 DELETION SEQADV 3I65 A UNP Q08210 LYS 408 DELETION SEQADV 3I65 A UNP Q08210 ASP 409 DELETION SEQADV 3I65 A UNP Q08210 ALA 410 DELETION SEQADV 3I65 A UNP Q08210 LYS 411 DELETION SEQADV 3I65 A UNP Q08210 ASP 412 DELETION SEQADV 3I65 A UNP Q08210 ASN 413 DELETION SEQRES 1 A 415 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 415 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 415 GLY GLN GLN GLY ARG ASP PRO PHE GLU SER TYR ASN PRO SEQRES 4 A 415 GLU PHE PHE LEU TYR ASP ILE PHE LEU LYS PHE CYS LEU SEQRES 5 A 415 LYS TYR ILE ASP GLY GLU ILE CYS HIS ASP LEU PHE LEU SEQRES 6 A 415 LEU LEU GLY LYS TYR ASN ILE LEU PRO TYR ASP THR SER SEQRES 7 A 415 ASN ASP SER ILE TYR ALA CYS THR ASN ILE LYS HIS LEU SEQRES 8 A 415 ASP PHE ILE ASN PRO PHE GLY VAL ALA ALA GLY PHE ASP SEQRES 9 A 415 LYS ASN GLY VAL CYS ILE ASP SER ILE LEU LYS LEU GLY SEQRES 10 A 415 PHE SER PHE ILE GLU ILE GLY THR ILE THR PRO ARG GLY SEQRES 11 A 415 GLN THR GLY ASN ALA LYS PRO ARG ILE PHE ARG ASP VAL SEQRES 12 A 415 GLU SER ARG SER ILE ILE ASN SER CYS GLY PHE ASN ASN SEQRES 13 A 415 MET GLY CYS ASP LYS VAL THR GLU ASN LEU ILE LEU PHE SEQRES 14 A 415 ARG LYS ARG GLN GLU GLU ASP LYS LEU LEU SER LYS HIS SEQRES 15 A 415 ILE VAL GLY VAL SER ILE GLY LYS ASN LYS ASP THR VAL SEQRES 16 A 415 ASN ILE VAL ASP ASP LEU LYS TYR CYS ILE ASN LYS ILE SEQRES 17 A 415 GLY ARG TYR ALA ASP TYR ILE ALA ILE ASN VAL SER SER SEQRES 18 A 415 PRO ASN THR PRO GLY LEU ARG ASP ASN GLN GLU ALA GLY SEQRES 19 A 415 LYS LEU LYS ASN ILE ILE LEU SER VAL LYS GLU GLU ILE SEQRES 20 A 415 ASP ASN LEU GLU LYS ASN ASN ILE MET ASN ASP GLU PHE SEQRES 21 A 415 LEU TRP PHE ASN THR THR LYS LYS LYS PRO LEU VAL PHE SEQRES 22 A 415 VAL LYS LEU ALA PRO ASP LEU ASN GLN GLU GLN LYS LYS SEQRES 23 A 415 GLU ILE ALA ASP VAL LEU LEU GLU THR ASN ILE ASP GLY SEQRES 24 A 415 MET ILE ILE SER ASN THR THR THR GLN ILE ASN ASP ILE SEQRES 25 A 415 LYS SER PHE GLU ASN LYS LYS GLY GLY VAL SER GLY ALA SEQRES 26 A 415 LYS LEU LYS ASP ILE SER THR LYS PHE ILE CYS GLU MET SEQRES 27 A 415 TYR ASN TYR THR ASN LYS GLN ILE PRO ILE ILE ALA SER SEQRES 28 A 415 GLY GLY ILE PHE SER GLY LEU ASP ALA LEU GLU LYS ILE SEQRES 29 A 415 GLU ALA GLY ALA SER VAL CYS GLN LEU TYR SER CYS LEU SEQRES 30 A 415 VAL PHE ASN GLY MET LYS SER ALA VAL GLN ILE LYS ARG SEQRES 31 A 415 GLU LEU ASN HIS LEU LEU TYR GLN ARG GLY TYR TYR ASN SEQRES 32 A 415 LEU LYS GLU ALA ILE GLY ARG LYS HIS SER LYS SER HET JZ8 A1001 21 HET FMN A1002 31 HET ORO A1003 11 HET LDA A1004 16 HETNAM JZ8 5-METHYL-7-(NAPHTHALEN-2-YLAMINO)-1H-[1,2,4]TRIAZOLO[1, HETNAM 2 JZ8 5-A]PYRIMIDINE-3,8-DIIUM HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM ORO OROTIC ACID HETNAM LDA LAURYL DIMETHYLAMINE-N-OXIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 JZ8 C16 H15 N5 2+ FORMUL 3 FMN C17 H21 N4 O9 P FORMUL 4 ORO C5 H4 N2 O4 FORMUL 5 LDA C14 H31 N O FORMUL 6 HOH *124(H2 O) HELIX 1 1 ASN A 162 ILE A 179 1 18 HELIX 2 2 ASP A 180 TYR A 194 1 15 HELIX 3 3 SER A 205 CYS A 209 5 5 HELIX 4 4 CYS A 233 LYS A 239 1 7 HELIX 5 5 GLY A 282 GLU A 298 1 17 HELIX 6 6 ASP A 300 SER A 304 5 5 HELIX 7 7 ASN A 320 GLY A 333 1 14 HELIX 8 8 ARG A 334 ALA A 336 5 3 HELIX 9 9 ALA A 357 ASN A 378 1 22 HELIX 10 10 ASN A 381 TRP A 416 1 6 HELIX 11 11 ASN A 435 ASN A 450 1 16 HELIX 12 12 ILE A 466 GLU A 470 5 5 HELIX 13 13 LEU A 481 THR A 496 1 16 HELIX 14 14 SER A 510 GLY A 521 1 12 HELIX 15 15 TYR A 528 GLY A 535 1 8 HELIX 16 16 LYS A 537 ARG A 553 1 17 HELIX 17 17 LEU A 558 ILE A 562 5 5 SHEET 1 A 2 THR A 210 ILE A 212 0 SHEET 2 A 2 LEU A 215 PHE A 217 -1 O PHE A 217 N THR A 210 SHEET 1 B 9 PHE A 221 VAL A 223 0 SHEET 2 B 9 PHE A 244 ILE A 250 1 O GLU A 246 N VAL A 223 SHEET 3 B 9 ILE A 307 ILE A 312 1 O SER A 311 N ILE A 247 SHEET 4 B 9 TYR A 338 ASN A 342 1 O ALA A 340 N VAL A 310 SHEET 5 B 9 LEU A 425 LEU A 430 1 O PHE A 427 N ILE A 339 SHEET 6 B 9 GLY A 453 ILE A 456 1 O ILE A 455 N VAL A 428 SHEET 7 B 9 ILE A 502 ALA A 504 1 O ILE A 503 N MET A 454 SHEET 8 B 9 ALA A 522 LEU A 527 1 O VAL A 524 N ALA A 504 SHEET 9 B 9 PHE A 221 VAL A 223 1 N GLY A 222 O CYS A 525 SHEET 1 C 3 ILE A 263 ASP A 266 0 SHEET 2 C 3 SER A 271 ASN A 274 -1 O SER A 271 N ASP A 266 SHEET 3 C 3 GLY A 475 GLY A 478 -1 O SER A 477 N ILE A 272 CISPEP 1 GLY A 248 THR A 249 0 2.80 CISPEP 2 LYS A 260 PRO A 261 0 -4.79 CISPEP 3 ILE A 456 SER A 457 0 2.92 CISPEP 4 SER A 505 GLY A 506 0 -21.13 SITE 1 AC1 12 HOH A 15 GLY A 181 CYS A 184 HIS A 185 SITE 2 AC1 12 PHE A 188 LEU A 189 LEU A 197 PHE A 227 SITE 3 AC1 12 ARG A 265 LEU A 531 VAL A 532 MET A 536 SITE 1 AC2 22 HOH A 11 HOH A 13 HOH A 20 ALA A 224 SITE 2 AC2 22 ALA A 225 GLY A 226 LYS A 229 THR A 249 SITE 3 AC2 22 ASN A 274 ASN A 342 LYS A 429 SER A 457 SITE 4 AC2 22 ASN A 458 SER A 477 GLY A 478 LEU A 481 SITE 5 AC2 22 SER A 505 GLY A 506 GLY A 507 TYR A 528 SITE 6 AC2 22 SER A 529 ORO A1003 SITE 1 AC3 11 LYS A 229 ASN A 274 CYS A 276 GLY A 277 SITE 2 AC3 11 PHE A 278 ASN A 342 SER A 345 ASN A 347 SITE 3 AC3 11 ASN A 458 THR A 459 FMN A1002 SITE 1 AC4 14 HOH A 2 HOH A 39 HOH A 47 ASP A 180 SITE 2 AC4 14 PRO A 261 ILE A 263 PHE A 264 ARG A 265 SITE 3 AC4 14 ASP A 266 VAL A 267 GLU A 268 GLU A 375 SITE 4 AC4 14 ASN A 381 ASP A 382 CRYST1 85.858 85.858 138.352 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011647 0.006724 0.000000 0.00000 SCALE2 0.000000 0.013449 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007228 0.00000