HEADER HYDROLASE 07-JUL-09 3I6O TITLE CRYSTAL STRUCTURE OF WILD TYPE HIV-1 PROTEASE WITH MACROCYCLIC TITLE 2 INHIBITOR GRL-0216A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 501-599; COMPND 5 EC: 3.4.23.16; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRU SOURCE 3 ISOLATE); SOURCE 4 ORGANISM_COMMON: HIV-1; SOURCE 5 ORGANISM_TAXID: 11686; SOURCE 6 GENE: GAG-POL; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS HIV-1, WILD TYPE PROTEASE, PROTEASE INHIBITOR, MACROCYCLIC LIGAND, KEYWDS 2 AIDS, ASPARTYL PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.A.CHUMANEVICH,Y.-F.WANG,A.Y.KOVALEVSKY,I.T.WEBER REVDAT 6 06-SEP-23 3I6O 1 REMARK REVDAT 5 13-OCT-21 3I6O 1 REMARK SEQADV LINK REVDAT 4 01-NOV-17 3I6O 1 REMARK REVDAT 3 13-JUL-11 3I6O 1 VERSN REVDAT 2 15-DEC-09 3I6O 1 JRNL REVDAT 1 29-SEP-09 3I6O 0 JRNL AUTH A.K.GHOSH,S.KULKARNI,D.D.ANDERSON,L.HONG,A.BALDRIDGE, JRNL AUTH 2 Y.F.WANG,A.A.CHUMANEVICH,A.Y.KOVALEVSKY,Y.TOJO,M.AMANO, JRNL AUTH 3 Y.KOH,J.TANG,I.T.WEBER,H.MITSUYA JRNL TITL DESIGN, SYNTHESIS, PROTEIN-LIGAND X-RAY STRUCTURE, AND JRNL TITL 2 BIOLOGICAL EVALUATION OF A SERIES OF NOVEL MACROCYCLIC HUMAN JRNL TITL 3 IMMUNODEFICIENCY VIRUS-1 PROTEASE INHIBITORS TO COMBAT DRUG JRNL TITL 4 RESISTANCE. JRNL REF J.MED.CHEM. V. 52 7689 2009 JRNL REFN ISSN 0022-2623 JRNL PMID 19746963 JRNL DOI 10.1021/JM900695W REMARK 2 REMARK 2 RESOLUTION. 1.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.161 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.159 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 3607 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 72049 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.148 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.146 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 2921 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 58561 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1512 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 181 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 1722.6 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 1602.0 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 26 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 17764 REMARK 3 NUMBER OF RESTRAINTS : 24272 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 ANGLE DISTANCES (A) : 0.034 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.031 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.080 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.075 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.030 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.004 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.035 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.091 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3I6O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054031. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8000 REMARK 200 MONOCHROMATOR : SI(220) CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72239 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.170 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 52.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.45700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3B7V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 1:15 MOLAR RATIO OF REMARK 280 PROTEASE AT 2.0 MG/ML AND INHIBITOR GRL-0216A DISSOLVED IN REMARK 280 DIMETHYLSULFOXIDE (DMSO). RESERVOIR SOLUTION: 5% GLYCEROL, 0.5 M REMARK 280 NAI IN 0.2 M MES BUFFER, PH 6.0. CRYSTAL MOUNTED ON A NYLON LOOP REMARK 280 IN THE LIQUID NITROGEN WITH ADDITIONAL 28% V/V GLYCEROL AS REMARK 280 CRYOPROTECTANT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 29.38200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.16400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.38200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.16400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 30 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 30 CB - CG - OD2 ANGL. DEV. = -8.3 DEGREES REMARK 500 ARG A 41 CG - CD - NE ANGL. DEV. = 13.4 DEGREES REMARK 500 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 41 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 57 CD - NE - CZ ANGL. DEV. = 9.4 DEGREES REMARK 500 TRP B 106 CA - CB - CG ANGL. DEV. = -13.0 DEGREES REMARK 500 ARG B 108 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 157 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 187 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 187 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 60 O REMARK 620 2 HOH A1023 O 102.9 REMARK 620 3 HOH A1055 O 76.8 100.5 REMARK 620 4 HOH A1076 O 92.4 159.4 96.3 REMARK 620 5 HOH A1094 O 168.8 86.6 95.9 79.8 REMARK 620 6 HOH A1107 O 95.4 76.3 170.9 88.8 92.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 160 O REMARK 620 2 HOH B1034 O 103.6 REMARK 620 3 HOH B1048 O 96.9 77.2 REMARK 620 4 HOH B1068 O 169.6 86.5 83.2 REMARK 620 5 HOH B1069 O 72.7 105.6 169.5 106.9 REMARK 620 6 HOH B1098 O 87.3 162.3 87.9 82.3 90.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 224 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 225 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 223 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 226 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GR6 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IEN RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH DARUNAVIR REMARK 900 RELATED ID: 2Z4O RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH GRL-98065 REMARK 900 RELATED ID: 3DJK RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH GRL-0255A REMARK 900 RELATED ID: 3DK1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH GRL-0105A REMARK 900 RELATED ID: 3H5B RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH GRL-02031 REMARK 900 RELATED ID: 2HB3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH GRL-06579A DBREF 3I6O A 1 99 UNP P03367 POL_HV1BR 501 599 DBREF 3I6O B 101 199 UNP P03367 POL_HV1BR 501 599 SEQADV 3I6O LYS A 7 UNP P03367 GLN 507 ENGINEERED MUTATION SEQADV 3I6O ILE A 33 UNP P03367 LEU 533 ENGINEERED MUTATION SEQADV 3I6O ILE A 63 UNP P03367 LEU 563 ENGINEERED MUTATION SEQADV 3I6O ALA A 67 UNP P03367 CYS 567 ENGINEERED MUTATION SEQADV 3I6O ALA A 95 UNP P03367 CYS 595 ENGINEERED MUTATION SEQADV 3I6O LYS B 107 UNP P03367 GLN 507 ENGINEERED MUTATION SEQADV 3I6O ILE B 133 UNP P03367 LEU 533 ENGINEERED MUTATION SEQADV 3I6O ILE B 163 UNP P03367 LEU 563 ENGINEERED MUTATION SEQADV 3I6O ALA B 167 UNP P03367 CYS 567 ENGINEERED MUTATION SEQADV 3I6O ALA B 195 UNP P03367 CYS 595 ENGINEERED MUTATION SEQRES 1 A 99 PRO GLN ILE THR LEU TRP LYS ARG PRO LEU VAL THR ILE SEQRES 2 A 99 LYS ILE GLY GLY GLN LEU LYS GLU ALA LEU LEU ASP THR SEQRES 3 A 99 GLY ALA ASP ASP THR VAL ILE GLU GLU MET SER LEU PRO SEQRES 4 A 99 GLY ARG TRP LYS PRO LYS MET ILE GLY GLY ILE GLY GLY SEQRES 5 A 99 PHE ILE LYS VAL ARG GLN TYR ASP GLN ILE ILE ILE GLU SEQRES 6 A 99 ILE ALA GLY HIS LYS ALA ILE GLY THR VAL LEU VAL GLY SEQRES 7 A 99 PRO THR PRO VAL ASN ILE ILE GLY ARG ASN LEU LEU THR SEQRES 8 A 99 GLN ILE GLY ALA THR LEU ASN PHE SEQRES 1 B 99 PRO GLN ILE THR LEU TRP LYS ARG PRO LEU VAL THR ILE SEQRES 2 B 99 LYS ILE GLY GLY GLN LEU LYS GLU ALA LEU LEU ASP THR SEQRES 3 B 99 GLY ALA ASP ASP THR VAL ILE GLU GLU MET SER LEU PRO SEQRES 4 B 99 GLY ARG TRP LYS PRO LYS MET ILE GLY GLY ILE GLY GLY SEQRES 5 B 99 PHE ILE LYS VAL ARG GLN TYR ASP GLN ILE ILE ILE GLU SEQRES 6 B 99 ILE ALA GLY HIS LYS ALA ILE GLY THR VAL LEU VAL GLY SEQRES 7 B 99 PRO THR PRO VAL ASN ILE ILE GLY ARG ASN LEU LEU THR SEQRES 8 B 99 GLN ILE GLY ALA THR LEU ASN PHE HET NA A 201 1 HET IOD A 211 1 HET IOD A 216 1 HET IOD A 217 1 HET IOD A 220 1 HET IOD A 224 1 HET IOD A 225 1 HET IOD A 228 1 HET IOD A 229 1 HET GOL A 303 6 HET NA B 202 1 HET IOD B 212 1 HET IOD B 213 1 HET IOD B 214 1 HET IOD B 215 1 HET IOD B 218 1 HET IOD B 219 1 HET IOD B 221 1 HET IOD B 222 1 HET IOD B 223 1 HET IOD B 226 1 HET IOD B 227 1 HET GR6 B 301 88 HET GOL B 302 6 HETNAM NA SODIUM ION HETNAM IOD IODIDE ION HETNAM GOL GLYCEROL HETNAM GR6 (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL {(1S,2R)-1- HETNAM 2 GR6 BENZYL-2-HYDROXY-3-[(7E)-13-METHOXY-1,1-DIOXIDO-3,4,5, HETNAM 3 GR6 6,9,10-HEXAHYDRO-2H-11,1,2-BENZOXATHIAZACYCLOTRIDECIN- HETNAM 4 GR6 2-YL]PROPYL}CARBAMATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NA 2(NA 1+) FORMUL 4 IOD 19(I 1-) FORMUL 12 GOL 2(C3 H8 O3) FORMUL 25 GR6 C32 H42 N2 O9 S FORMUL 27 HOH *181(H2 O) HELIX 1 1 GLY A 86 THR A 91 1 6 HELIX 2 2 GLN A 92 GLY A 94 5 3 HELIX 3 3 GLY B 186 THR B 191 1 6 SHEET 1 A 4 GLN A 2 ILE A 3 0 SHEET 2 A 4 THR B 196 ASN B 198 -1 O LEU B 197 N ILE A 3 SHEET 3 A 4 THR A 96 ASN A 98 -1 N THR A 96 O ASN B 198 SHEET 4 A 4 GLN B 102 ILE B 103 -1 O ILE B 103 N LEU A 97 SHEET 1 B 8 LYS A 43 GLY A 49 0 SHEET 2 B 8 GLY A 52 ILE A 66 -1 O GLN A 58 N LYS A 43 SHEET 3 B 8 HIS A 69 VAL A 77 -1 O HIS A 69 N ILE A 66 SHEET 4 B 8 VAL A 32 ILE A 33 1 N ILE A 33 O LEU A 76 SHEET 5 B 8 ILE A 84 ILE A 85 -1 O ILE A 84 N VAL A 32 SHEET 6 B 8 GLN A 18 LEU A 24 1 N LEU A 23 O ILE A 85 SHEET 7 B 8 LEU A 10 ILE A 15 -1 N ILE A 13 O LYS A 20 SHEET 8 B 8 GLY A 52 ILE A 66 -1 O GLU A 65 N LYS A 14 SHEET 1 C 8 LYS B 143 GLY B 149 0 SHEET 2 C 8 GLY B 152 ILE B 166 -1 O GLN B 158 N LYS B 143 SHEET 3 C 8 HIS B 169 VAL B 177 -1 O GLY B 173 N ILE B 162 SHEET 4 C 8 VAL B 132 ILE B 133 1 N ILE B 133 O LEU B 176 SHEET 5 C 8 ILE B 184 ILE B 185 -1 O ILE B 184 N VAL B 132 SHEET 6 C 8 GLN B 118 LEU B 124 1 N LEU B 123 O ILE B 185 SHEET 7 C 8 LEU B 110 ILE B 115 -1 N ILE B 113 O LYS B 120 SHEET 8 C 8 GLY B 152 ILE B 166 -1 O GLU B 165 N LYS B 114 LINK O ASP A 60 NA NA A 201 1555 1555 2.44 LINK NA NA A 201 O HOH A1023 1555 1555 2.31 LINK NA NA A 201 O HOH A1055 1555 1555 2.46 LINK NA NA A 201 O HOH A1076 1555 1555 2.49 LINK NA NA A 201 O HOH A1094 1555 1555 2.60 LINK NA NA A 201 O HOH A1107 1555 1555 2.34 LINK O ASP B 160 NA NA B 202 1555 1555 2.46 LINK NA NA B 202 O HOH B1034 1555 1555 2.26 LINK NA NA B 202 O HOH B1048 1555 1555 2.45 LINK NA NA B 202 O HOH B1068 1555 1555 2.71 LINK NA NA B 202 O HOH B1069 1555 1555 2.35 LINK NA NA B 202 O HOH B1098 1555 1555 2.55 SITE 1 AC1 6 ASP A 60 HOH A1023 HOH A1055 HOH A1076 SITE 2 AC1 6 HOH A1094 HOH A1107 SITE 1 AC2 1 THR A 74 SITE 1 AC3 2 GLY A 48 HOH A1232 SITE 1 AC4 2 THR A 12 GLY A 68 SITE 1 AC5 1 THR A 12 SITE 1 AC6 2 GLN A 61 IOD A 225 SITE 1 AC7 1 IOD A 224 SITE 1 AC8 2 LYS A 55 HOH A1195 SITE 1 AC9 6 LYS A 14 GLY A 16 GLY A 17 ILE A 63 SITE 2 AC9 6 ILE A 64 GLU A 65 SITE 1 BC1 6 ASP B 160 HOH B1034 HOH B1048 HOH B1068 SITE 2 BC1 6 HOH B1069 HOH B1098 SITE 1 BC2 1 THR B 112 SITE 1 BC3 1 HOH B1124 SITE 1 BC4 1 IOD B 215 SITE 1 BC5 3 PRO B 144 LYS B 155 IOD B 214 SITE 1 BC6 1 GLY B 148 SITE 1 BC7 2 ILE B 163 HOH B1074 SITE 1 BC8 3 HOH A1231 GLY B 140 HOH B1236 SITE 1 BC9 1 ARG B 108 SITE 1 CC1 2 HOH A1237 GLU B 165 SITE 1 CC2 3 LYS A 55 LYS B 170 IOD B 227 SITE 1 CC3 2 LYS A 55 IOD B 226 SITE 1 CC4 27 ARG A 8 ASP A 25 GLY A 27 ALA A 28 SITE 2 CC4 27 ASP A 29 ASP A 30 GLY A 48 GLY A 49 SITE 3 CC4 27 ILE A 50 PRO A 81 VAL A 82 ILE A 84 SITE 4 CC4 27 HOH A1232 ARG B 108 ASP B 125 GLY B 127 SITE 5 CC4 27 ALA B 128 ASP B 129 ASP B 130 GLY B 148 SITE 6 CC4 27 GLY B 149 ILE B 150 PRO B 181 VAL B 182 SITE 7 CC4 27 ILE B 184 HOH B1001 HOH B1253 SITE 1 CC5 6 LEU A 5 TRP A 6 ASP B 129 ARG B 187 SITE 2 CC5 6 ASN B 188 THR B 191 CRYST1 58.764 86.328 45.976 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017017 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011584 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021750 0.00000