HEADER HYDROLASE 07-JUL-09 3I6Y TITLE STRUCTURE OF AN ESTERASE FROM THE OIL-DEGRADING BACTERIUM OLEISPIRA TITLE 2 ANTARCTICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTERASE APC40077; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.1.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OLEISPIRA ANTARCTICA; SOURCE 3 ORGANISM_TAXID: 188908; SOURCE 4 GENE: OLEI01171; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIPL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS OLEISPIRA ANTARCTICA, LIPASE, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.U.SINGER,E.EVDOKIMOVA,O.KAGAN,A.M.EDWARDS,A.JOACHIMIAK,A.SAVCHENKO, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 6 22-NOV-23 3I6Y 1 REMARK REVDAT 5 06-SEP-23 3I6Y 1 REMARK LINK REVDAT 4 09-DEC-15 3I6Y 1 REMARK REVDAT 3 11-JUL-12 3I6Y 1 JRNL REVDAT 2 13-JUL-11 3I6Y 1 VERSN REVDAT 1 28-JUL-09 3I6Y 0 JRNL AUTH S.LEMAK,A.TCHIGVINTSEV,P.PETIT,R.FLICK,A.U.SINGER,G.BROWN, JRNL AUTH 2 E.EVDOKIMOVA,O.EGOROVA,C.F.GONZALEZ,T.N.CHERNIKOVA, JRNL AUTH 3 M.M.YAKIMOV,M.KUBE,R.REINHARDT,P.N.GOLYSHIN,A.SAVCHENKO, JRNL AUTH 4 A.F.YAKUNIN JRNL TITL STRUCTURE AND ACTIVITY OF THE COLD-ACTIVE AND JRNL TITL 2 ANION-ACTIVATED CARBOXYL ESTERASE OLEI01171 FROM THE JRNL TITL 3 OIL-DEGRADING MARINE BACTERIUM OLEISPIRA ANTARCTICA. JRNL REF BIOCHEM.J. V. 445 193 2012 JRNL REFN ISSN 0264-6021 JRNL PMID 22519667 JRNL DOI 10.1042/BJ20112113 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 57845 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3072 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3436 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 174 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4358 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 508 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 15.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.138 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4715 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6434 ; 1.484 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 602 ; 6.761 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 232 ;36.599 ;24.224 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 718 ;14.165 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;14.390 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 658 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3795 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2559 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3266 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 432 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 73 ; 0.223 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 34 ; 0.193 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2992 ; 0.891 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4687 ; 1.281 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2004 ; 2.394 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1747 ; 3.430 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 279 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0888 19.8940 -37.5048 REMARK 3 T TENSOR REMARK 3 T11: -0.0031 T22: -0.0032 REMARK 3 T33: -0.0185 T12: 0.0032 REMARK 3 T13: 0.0082 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.0950 L22: 0.2864 REMARK 3 L33: 0.1415 L12: 0.0038 REMARK 3 L13: 0.0323 L23: 0.0809 REMARK 3 S TENSOR REMARK 3 S11: -0.0077 S12: -0.0053 S13: -0.0069 REMARK 3 S21: -0.0431 S22: -0.0120 S23: -0.0003 REMARK 3 S31: -0.0028 S32: -0.0011 S33: 0.0197 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 279 REMARK 3 ORIGIN FOR THE GROUP (A): -4.7213 35.4365 -5.1982 REMARK 3 T TENSOR REMARK 3 T11: -0.0191 T22: 0.0049 REMARK 3 T33: -0.0148 T12: -0.0039 REMARK 3 T13: 0.0027 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.0647 L22: 0.3979 REMARK 3 L33: 0.2098 L12: -0.0753 REMARK 3 L13: 0.0017 L23: 0.1696 REMARK 3 S TENSOR REMARK 3 S11: -0.0086 S12: -0.0089 S13: -0.0049 REMARK 3 S21: 0.0253 S22: -0.0185 S23: 0.0198 REMARK 3 S31: 0.0025 S32: -0.0116 S33: 0.0270 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3I6Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054041. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61811 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 27.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3380 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.31300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: PHASER REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1PV1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M DIAMMONIUM HYDROGEN CITRATE, 20% REMARK 280 PEG 3350, CRYOPROTECTED IN PARATONE-N OIL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 294K, PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.08950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 74 O HOH B 380 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 56 -13.03 74.89 REMARK 500 SER A 58 -168.97 -111.94 REMARK 500 ALA A 103 43.55 -150.46 REMARK 500 PHE A 105 13.23 55.13 REMARK 500 SER A 148 -108.61 58.14 REMARK 500 ASP A 256 -158.05 -105.16 REMARK 500 THR B 56 -10.62 78.09 REMARK 500 ALA B 103 44.09 -149.51 REMARK 500 PHE B 105 17.64 54.21 REMARK 500 GLN B 119 50.67 -116.54 REMARK 500 SER B 148 -115.27 60.51 REMARK 500 ASP B 256 -153.72 -104.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN B 278 ALA B 279 133.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 282 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 283 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 284 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 282 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 283 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC40077 RELATED DB: TARGETDB DBREF 3I6Y A 0 279 PDB 3I6Y 3I6Y 0 279 DBREF 3I6Y B 0 279 PDB 3I6Y 3I6Y 0 279 SEQRES 1 A 280 GLY MSE SER ILE GLU ASN LEU SER SER ASN LYS SER PHE SEQRES 2 A 280 GLY GLY TRP HIS LYS GLN TYR SER HIS VAL SER ASN THR SEQRES 3 A 280 LEU ASN CYS ALA MSE ARG PHE ALA ILE TYR LEU PRO PRO SEQRES 4 A 280 GLN ALA SER THR GLY ALA LYS VAL PRO VAL LEU TYR TRP SEQRES 5 A 280 LEU SER GLY LEU THR CYS SER ASP GLU ASN PHE MSE GLN SEQRES 6 A 280 LYS ALA GLY ALA GLN ARG LEU ALA ALA GLU LEU GLY ILE SEQRES 7 A 280 ALA ILE VAL ALA PRO ASP THR SER PRO ARG GLY GLU GLY SEQRES 8 A 280 VAL ALA ASP ASP GLU GLY TYR ASP LEU GLY GLN GLY ALA SEQRES 9 A 280 GLY PHE TYR VAL ASN ALA THR GLN ALA PRO TRP ASN ARG SEQRES 10 A 280 HIS TYR GLN MSE TYR ASP TYR VAL VAL ASN GLU LEU PRO SEQRES 11 A 280 GLU LEU ILE GLU SER MSE PHE PRO VAL SER ASP LYS ARG SEQRES 12 A 280 ALA ILE ALA GLY HIS SER MSE GLY GLY HIS GLY ALA LEU SEQRES 13 A 280 THR ILE ALA LEU ARG ASN PRO GLU ARG TYR GLN SER VAL SEQRES 14 A 280 SER ALA PHE SER PRO ILE ASN ASN PRO VAL ASN CYS PRO SEQRES 15 A 280 TRP GLY GLN LYS ALA PHE THR ALA TYR LEU GLY LYS ASP SEQRES 16 A 280 THR ASP THR TRP ARG GLU TYR ASP ALA SER LEU LEU MSE SEQRES 17 A 280 ARG ALA ALA LYS GLN TYR VAL PRO ALA LEU VAL ASP GLN SEQRES 18 A 280 GLY GLU ALA ASP ASN PHE LEU ALA GLU GLN LEU LYS PRO SEQRES 19 A 280 GLU VAL LEU GLU ALA ALA ALA SER SER ASN ASN TYR PRO SEQRES 20 A 280 LEU GLU LEU ARG SER HIS GLU GLY TYR ASP HIS SER TYR SEQRES 21 A 280 TYR PHE ILE ALA SER PHE ILE GLU ASP HIS LEU ARG PHE SEQRES 22 A 280 HIS SER ASN TYR LEU ASN ALA SEQRES 1 B 280 GLY MSE SER ILE GLU ASN LEU SER SER ASN LYS SER PHE SEQRES 2 B 280 GLY GLY TRP HIS LYS GLN TYR SER HIS VAL SER ASN THR SEQRES 3 B 280 LEU ASN CYS ALA MSE ARG PHE ALA ILE TYR LEU PRO PRO SEQRES 4 B 280 GLN ALA SER THR GLY ALA LYS VAL PRO VAL LEU TYR TRP SEQRES 5 B 280 LEU SER GLY LEU THR CYS SER ASP GLU ASN PHE MSE GLN SEQRES 6 B 280 LYS ALA GLY ALA GLN ARG LEU ALA ALA GLU LEU GLY ILE SEQRES 7 B 280 ALA ILE VAL ALA PRO ASP THR SER PRO ARG GLY GLU GLY SEQRES 8 B 280 VAL ALA ASP ASP GLU GLY TYR ASP LEU GLY GLN GLY ALA SEQRES 9 B 280 GLY PHE TYR VAL ASN ALA THR GLN ALA PRO TRP ASN ARG SEQRES 10 B 280 HIS TYR GLN MSE TYR ASP TYR VAL VAL ASN GLU LEU PRO SEQRES 11 B 280 GLU LEU ILE GLU SER MSE PHE PRO VAL SER ASP LYS ARG SEQRES 12 B 280 ALA ILE ALA GLY HIS SER MSE GLY GLY HIS GLY ALA LEU SEQRES 13 B 280 THR ILE ALA LEU ARG ASN PRO GLU ARG TYR GLN SER VAL SEQRES 14 B 280 SER ALA PHE SER PRO ILE ASN ASN PRO VAL ASN CYS PRO SEQRES 15 B 280 TRP GLY GLN LYS ALA PHE THR ALA TYR LEU GLY LYS ASP SEQRES 16 B 280 THR ASP THR TRP ARG GLU TYR ASP ALA SER LEU LEU MSE SEQRES 17 B 280 ARG ALA ALA LYS GLN TYR VAL PRO ALA LEU VAL ASP GLN SEQRES 18 B 280 GLY GLU ALA ASP ASN PHE LEU ALA GLU GLN LEU LYS PRO SEQRES 19 B 280 GLU VAL LEU GLU ALA ALA ALA SER SER ASN ASN TYR PRO SEQRES 20 B 280 LEU GLU LEU ARG SER HIS GLU GLY TYR ASP HIS SER TYR SEQRES 21 B 280 TYR PHE ILE ALA SER PHE ILE GLU ASP HIS LEU ARG PHE SEQRES 22 B 280 HIS SER ASN TYR LEU ASN ALA MODRES 3I6Y MSE A 30 MET SELENOMETHIONINE MODRES 3I6Y MSE A 63 MET SELENOMETHIONINE MODRES 3I6Y MSE A 120 MET SELENOMETHIONINE MODRES 3I6Y MSE A 135 MET SELENOMETHIONINE MODRES 3I6Y MSE A 149 MET SELENOMETHIONINE MODRES 3I6Y MSE A 207 MET SELENOMETHIONINE MODRES 3I6Y MSE B 30 MET SELENOMETHIONINE MODRES 3I6Y MSE B 63 MET SELENOMETHIONINE MODRES 3I6Y MSE B 120 MET SELENOMETHIONINE MODRES 3I6Y MSE B 135 MET SELENOMETHIONINE MODRES 3I6Y MSE B 149 MET SELENOMETHIONINE MODRES 3I6Y MSE B 207 MET SELENOMETHIONINE HET MSE A 30 8 HET MSE A 63 8 HET MSE A 120 8 HET MSE A 135 16 HET MSE A 149 8 HET MSE A 207 8 HET MSE B 30 8 HET MSE B 63 8 HET MSE B 120 8 HET MSE B 135 16 HET MSE B 149 8 HET MSE B 207 8 HET CL A 280 1 HET EDO A 281 4 HET EDO A 282 4 HET EDO A 283 4 HET EDO A 284 4 HET CL B 280 1 HET EDO B 281 4 HET EDO B 282 4 HET PEG B 283 7 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 CL 2(CL 1-) FORMUL 4 EDO 6(C2 H6 O2) FORMUL 11 PEG C4 H10 O3 FORMUL 12 HOH *508(H2 O) HELIX 1 1 PRO A 37 THR A 42 5 6 HELIX 2 2 GLU A 60 ALA A 66 1 7 HELIX 3 3 ALA A 68 GLY A 76 1 9 HELIX 4 4 PRO A 113 HIS A 117 5 5 HELIX 5 5 GLN A 119 ASN A 126 1 8 HELIX 6 6 ASN A 126 PHE A 136 1 11 HELIX 7 7 SER A 148 ASN A 161 1 14 HELIX 8 8 ASN A 176 ASN A 179 5 4 HELIX 9 9 CYS A 180 GLY A 192 1 13 HELIX 10 10 ASP A 194 TYR A 201 5 8 HELIX 11 11 ASP A 202 ALA A 210 1 9 HELIX 12 12 PHE A 226 LEU A 231 1 6 HELIX 13 13 LYS A 232 ASN A 243 1 12 HELIX 14 14 SER A 258 ASN A 278 1 21 HELIX 15 15 PRO B 37 THR B 42 5 6 HELIX 16 16 GLU B 60 ALA B 66 1 7 HELIX 17 17 ALA B 68 GLY B 76 1 9 HELIX 18 18 PRO B 113 HIS B 117 5 5 HELIX 19 19 GLN B 119 ASN B 126 1 8 HELIX 20 20 ASN B 126 PHE B 136 1 11 HELIX 21 21 SER B 148 ASN B 161 1 14 HELIX 22 22 ASN B 176 ASN B 179 5 4 HELIX 23 23 CYS B 180 GLY B 192 1 13 HELIX 24 24 ASP B 194 TYR B 201 5 8 HELIX 25 25 ASP B 202 ALA B 210 1 9 HELIX 26 26 PHE B 226 LEU B 231 1 6 HELIX 27 27 LYS B 232 ASN B 243 1 12 HELIX 28 28 SER B 258 ASN B 278 1 21 SHEET 1 A 9 ILE A 3 SER A 11 0 SHEET 2 A 9 GLY A 14 SER A 23 -1 O GLN A 18 N LEU A 6 SHEET 3 A 9 CYS A 28 LEU A 36 -1 O CYS A 28 N SER A 23 SHEET 4 A 9 ALA A 78 PRO A 82 -1 O ILE A 79 N TYR A 35 SHEET 5 A 9 VAL A 46 LEU A 52 1 N LEU A 49 O ALA A 78 SHEET 6 A 9 VAL A 138 HIS A 147 1 O ALA A 143 N TYR A 50 SHEET 7 A 9 VAL A 168 PHE A 171 1 O PHE A 171 N GLY A 146 SHEET 8 A 9 ALA A 216 GLY A 221 1 O ASP A 219 N ALA A 170 SHEET 9 A 9 LEU A 247 HIS A 252 1 O ARG A 250 N VAL A 218 SHEET 1 B 9 ILE B 3 SER B 11 0 SHEET 2 B 9 GLY B 14 SER B 23 -1 O GLN B 18 N LEU B 6 SHEET 3 B 9 CYS B 28 LEU B 36 -1 O PHE B 32 N TYR B 19 SHEET 4 B 9 ALA B 78 PRO B 82 -1 O ALA B 81 N ALA B 33 SHEET 5 B 9 VAL B 46 LEU B 52 1 N LEU B 49 O ALA B 78 SHEET 6 B 9 VAL B 138 HIS B 147 1 O ALA B 143 N TYR B 50 SHEET 7 B 9 VAL B 168 PHE B 171 1 O PHE B 171 N GLY B 146 SHEET 8 B 9 ALA B 216 GLY B 221 1 O ASP B 219 N ALA B 170 SHEET 9 B 9 LEU B 247 HIS B 252 1 O ARG B 250 N VAL B 218 LINK C ALA A 29 N MSE A 30 1555 1555 1.33 LINK C MSE A 30 N ARG A 31 1555 1555 1.33 LINK C PHE A 62 N MSE A 63 1555 1555 1.35 LINK C MSE A 63 N GLN A 64 1555 1555 1.33 LINK C GLN A 119 N MSE A 120 1555 1555 1.33 LINK C MSE A 120 N TYR A 121 1555 1555 1.35 LINK C SER A 134 N AMSE A 135 1555 1555 1.33 LINK C SER A 134 N BMSE A 135 1555 1555 1.33 LINK C AMSE A 135 N PHE A 136 1555 1555 1.32 LINK C BMSE A 135 N PHE A 136 1555 1555 1.33 LINK C SER A 148 N MSE A 149 1555 1555 1.33 LINK C MSE A 149 N GLY A 150 1555 1555 1.33 LINK C LEU A 206 N MSE A 207 1555 1555 1.32 LINK C MSE A 207 N ARG A 208 1555 1555 1.34 LINK C ALA B 29 N MSE B 30 1555 1555 1.33 LINK C MSE B 30 N ARG B 31 1555 1555 1.33 LINK C PHE B 62 N MSE B 63 1555 1555 1.35 LINK C MSE B 63 N GLN B 64 1555 1555 1.33 LINK C GLN B 119 N MSE B 120 1555 1555 1.32 LINK C MSE B 120 N TYR B 121 1555 1555 1.33 LINK C SER B 134 N AMSE B 135 1555 1555 1.34 LINK C SER B 134 N BMSE B 135 1555 1555 1.34 LINK C AMSE B 135 N PHE B 136 1555 1555 1.33 LINK C BMSE B 135 N PHE B 136 1555 1555 1.33 LINK C SER B 148 N MSE B 149 1555 1555 1.33 LINK C MSE B 149 N GLY B 150 1555 1555 1.33 LINK C LEU B 206 N MSE B 207 1555 1555 1.33 LINK C MSE B 207 N ARG B 208 1555 1555 1.33 CISPEP 1 ALA A 112 PRO A 113 0 0.68 CISPEP 2 ALA B 112 PRO B 113 0 -1.63 SITE 1 AC1 4 LEU A 55 SER A 148 MSE A 149 HOH A 299 SITE 1 AC2 6 VAL A 22 SER A 23 ASN A 24 ASN A 27 SITE 2 AC2 6 CYS A 28 HOH A 541 SITE 1 AC3 6 LYS A 65 TYR A 259 TYR A 260 HOH A 336 SITE 2 AC3 6 GLN B 64 HOH B 290 SITE 1 AC4 7 ALA A 223 ASN A 225 ASP A 256 HOH A 313 SITE 2 AC4 7 HOH A 375 HOH A 423 HOH B 358 SITE 1 AC5 4 PRO A 181 LYS A 185 HOH A 432 HOH A 516 SITE 1 AC6 4 LEU B 55 SER B 148 MSE B 149 HOH B 317 SITE 1 AC7 3 LYS B 10 GLY B 13 HOH B 387 SITE 1 AC8 7 SER B 58 ASP B 59 ASP B 83 ARG B 87 SITE 2 AC8 7 HOH B 398 HOH B 450 HOH B 532 SITE 1 AC9 9 MSE A 63 GLN A 64 LYS B 65 TYR B 259 SITE 2 AC9 9 TYR B 260 HOH B 292 HOH B 336 HOH B 407 SITE 3 AC9 9 HOH B 485 CRYST1 44.845 88.179 84.104 90.00 94.75 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022299 0.000000 0.001851 0.00000 SCALE2 0.000000 0.011341 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011931 0.00000