data_3I7A # _entry.id 3I7A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3I7A pdb_00003i7a 10.2210/pdb3i7a/pdb RCSB RCSB054053 ? ? WWPDB D_1000054053 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 394288 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3I7A _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-07-08 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of Putative metal-dependent phosphohydrolase (YP_926882.1) from Shewanella amazonensis SB2B at 2.06 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3I7A _cell.length_a 76.626 _cell.length_b 76.626 _cell.length_c 57.783 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3I7A _symmetry.Int_Tables_number 76 _symmetry.space_group_name_H-M 'P 41' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative metal-dependent phosphohydrolase' 31366.627 1 ? ? ? ? 2 water nat water 18.015 138 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Putative signal transduction protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)SNEHQLLVGLLKKLKDDALILPTLPEVA(MSE)RVQEVVGRPDSSLKQVAEIIGQDAAISARIIKVANSALYSR GVPAENINSAVTRIGLTQIKSIATSVA(MSE)EQLFISTNE(MSE)VWEV(MSE)DEVWRTSIDVTAAACSLLQIYNKKH PGSGLNYDTLTLAGLVHNIGALPVLTEAEAHPE(MSE)FTTIEHLRSLVRK(MSE)QGPIGRAVLKSWDFAPEV(MSE)E VVERWADLPYLGDHVSYLDFIRAAAFYTGELRAGNELEQRLDVFVKRGLPVSPEDLGSDAFLDSYHSIKASYE ; _entity_poly.pdbx_seq_one_letter_code_can ;GMSNEHQLLVGLLKKLKDDALILPTLPEVAMRVQEVVGRPDSSLKQVAEIIGQDAAISARIIKVANSALYSRGVPAENIN SAVTRIGLTQIKSIATSVAMEQLFISTNEMVWEVMDEVWRTSIDVTAAACSLLQIYNKKHPGSGLNYDTLTLAGLVHNIG ALPVLTEAEAHPEMFTTIEHLRSLVRKMQGPIGRAVLKSWDFAPEVMEVVERWADLPYLGDHVSYLDFIRAAAFYTGELR AGNELEQRLDVFVKRGLPVSPEDLGSDAFLDSYHSIKASYE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 394288 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 SER n 1 4 ASN n 1 5 GLU n 1 6 HIS n 1 7 GLN n 1 8 LEU n 1 9 LEU n 1 10 VAL n 1 11 GLY n 1 12 LEU n 1 13 LEU n 1 14 LYS n 1 15 LYS n 1 16 LEU n 1 17 LYS n 1 18 ASP n 1 19 ASP n 1 20 ALA n 1 21 LEU n 1 22 ILE n 1 23 LEU n 1 24 PRO n 1 25 THR n 1 26 LEU n 1 27 PRO n 1 28 GLU n 1 29 VAL n 1 30 ALA n 1 31 MSE n 1 32 ARG n 1 33 VAL n 1 34 GLN n 1 35 GLU n 1 36 VAL n 1 37 VAL n 1 38 GLY n 1 39 ARG n 1 40 PRO n 1 41 ASP n 1 42 SER n 1 43 SER n 1 44 LEU n 1 45 LYS n 1 46 GLN n 1 47 VAL n 1 48 ALA n 1 49 GLU n 1 50 ILE n 1 51 ILE n 1 52 GLY n 1 53 GLN n 1 54 ASP n 1 55 ALA n 1 56 ALA n 1 57 ILE n 1 58 SER n 1 59 ALA n 1 60 ARG n 1 61 ILE n 1 62 ILE n 1 63 LYS n 1 64 VAL n 1 65 ALA n 1 66 ASN n 1 67 SER n 1 68 ALA n 1 69 LEU n 1 70 TYR n 1 71 SER n 1 72 ARG n 1 73 GLY n 1 74 VAL n 1 75 PRO n 1 76 ALA n 1 77 GLU n 1 78 ASN n 1 79 ILE n 1 80 ASN n 1 81 SER n 1 82 ALA n 1 83 VAL n 1 84 THR n 1 85 ARG n 1 86 ILE n 1 87 GLY n 1 88 LEU n 1 89 THR n 1 90 GLN n 1 91 ILE n 1 92 LYS n 1 93 SER n 1 94 ILE n 1 95 ALA n 1 96 THR n 1 97 SER n 1 98 VAL n 1 99 ALA n 1 100 MSE n 1 101 GLU n 1 102 GLN n 1 103 LEU n 1 104 PHE n 1 105 ILE n 1 106 SER n 1 107 THR n 1 108 ASN n 1 109 GLU n 1 110 MSE n 1 111 VAL n 1 112 TRP n 1 113 GLU n 1 114 VAL n 1 115 MSE n 1 116 ASP n 1 117 GLU n 1 118 VAL n 1 119 TRP n 1 120 ARG n 1 121 THR n 1 122 SER n 1 123 ILE n 1 124 ASP n 1 125 VAL n 1 126 THR n 1 127 ALA n 1 128 ALA n 1 129 ALA n 1 130 CYS n 1 131 SER n 1 132 LEU n 1 133 LEU n 1 134 GLN n 1 135 ILE n 1 136 TYR n 1 137 ASN n 1 138 LYS n 1 139 LYS n 1 140 HIS n 1 141 PRO n 1 142 GLY n 1 143 SER n 1 144 GLY n 1 145 LEU n 1 146 ASN n 1 147 TYR n 1 148 ASP n 1 149 THR n 1 150 LEU n 1 151 THR n 1 152 LEU n 1 153 ALA n 1 154 GLY n 1 155 LEU n 1 156 VAL n 1 157 HIS n 1 158 ASN n 1 159 ILE n 1 160 GLY n 1 161 ALA n 1 162 LEU n 1 163 PRO n 1 164 VAL n 1 165 LEU n 1 166 THR n 1 167 GLU n 1 168 ALA n 1 169 GLU n 1 170 ALA n 1 171 HIS n 1 172 PRO n 1 173 GLU n 1 174 MSE n 1 175 PHE n 1 176 THR n 1 177 THR n 1 178 ILE n 1 179 GLU n 1 180 HIS n 1 181 LEU n 1 182 ARG n 1 183 SER n 1 184 LEU n 1 185 VAL n 1 186 ARG n 1 187 LYS n 1 188 MSE n 1 189 GLN n 1 190 GLY n 1 191 PRO n 1 192 ILE n 1 193 GLY n 1 194 ARG n 1 195 ALA n 1 196 VAL n 1 197 LEU n 1 198 LYS n 1 199 SER n 1 200 TRP n 1 201 ASP n 1 202 PHE n 1 203 ALA n 1 204 PRO n 1 205 GLU n 1 206 VAL n 1 207 MSE n 1 208 GLU n 1 209 VAL n 1 210 VAL n 1 211 GLU n 1 212 ARG n 1 213 TRP n 1 214 ALA n 1 215 ASP n 1 216 LEU n 1 217 PRO n 1 218 TYR n 1 219 LEU n 1 220 GLY n 1 221 ASP n 1 222 HIS n 1 223 VAL n 1 224 SER n 1 225 TYR n 1 226 LEU n 1 227 ASP n 1 228 PHE n 1 229 ILE n 1 230 ARG n 1 231 ALA n 1 232 ALA n 1 233 ALA n 1 234 PHE n 1 235 TYR n 1 236 THR n 1 237 GLY n 1 238 GLU n 1 239 LEU n 1 240 ARG n 1 241 ALA n 1 242 GLY n 1 243 ASN n 1 244 GLU n 1 245 LEU n 1 246 GLU n 1 247 GLN n 1 248 ARG n 1 249 LEU n 1 250 ASP n 1 251 VAL n 1 252 PHE n 1 253 VAL n 1 254 LYS n 1 255 ARG n 1 256 GLY n 1 257 LEU n 1 258 PRO n 1 259 VAL n 1 260 SER n 1 261 PRO n 1 262 GLU n 1 263 ASP n 1 264 LEU n 1 265 GLY n 1 266 SER n 1 267 ASP n 1 268 ALA n 1 269 PHE n 1 270 LEU n 1 271 ASP n 1 272 SER n 1 273 TYR n 1 274 HIS n 1 275 SER n 1 276 ILE n 1 277 LYS n 1 278 ALA n 1 279 SER n 1 280 TYR n 1 281 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Sama_1005, YP_926882.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Shewanella amazonensis SB2B' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 326297 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 'BAA-1098 / SB2B' _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A1S4A6_SHEAM _struct_ref.pdbx_db_accession A1S4A6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSNEHQLLVGLLKKLKDDALILPTLPEVAMRVQEVVGRPDSSLKQVAEIIGQDAAISARIIKVANSALYSRGVPAENINS AVTRIGLTQIKSIATSVAMEQLFISTNEMVWEVMDEVWRTSIDVTAAACSLLQIYNKKHPGSGLNYDTLTLAGLVHNIGA LPVLTEAEAHPEMFTTIEHLRSLVRKMQGPIGRAVLKSWDFAPEVMEVVERWADLPYLGDHVSYLDFIRAAAFYTGELRA GNELEQRLDVFVKRGLPVSPEDLGSDAFLDSYHSIKASYE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3I7A _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 281 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A1S4A6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 280 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 280 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3I7A _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code A1S4A6 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3I7A # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.70 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 54.51 _exptl_crystal.description 'DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS SEPARATE WHEN COMPUTING R-SYM, COMPLETENESS AND .' _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '20.0000% PEG-6000, 0.1M TRIS pH 8.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2009-04-16 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.97839 1.0 3 0.97799 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.91162,0.97839,0.97799 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3I7A _reflns.d_resolution_high 2.06 _reflns.d_resolution_low 29.476 _reflns.number_obs 20761 _reflns.pdbx_Rmerge_I_obs 0.053 _reflns.pdbx_netI_over_sigmaI 11.620 _reflns.percent_possible_obs 98.000 _reflns.B_iso_Wilson_estimate 29.504 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.06 2.14 7387 ? 3843 0.408 1.9 ? ? ? ? ? 98.30 1 1 2.14 2.23 7984 ? 4139 0.318 2.5 ? ? ? ? ? 98.50 2 1 2.23 2.33 7618 ? 3950 0.239 3.4 ? ? ? ? ? 98.30 3 1 2.33 2.45 7544 ? 3896 0.169 4.6 ? ? ? ? ? 98.60 4 1 2.45 2.61 8100 ? 4173 0.140 5.7 ? ? ? ? ? 98.50 5 1 2.61 2.81 7697 ? 3958 0.103 7.7 ? ? ? ? ? 98.50 6 1 2.81 3.09 7778 ? 3992 0.069 11.0 ? ? ? ? ? 98.50 7 1 3.09 3.53 7615 ? 3891 0.041 17.2 ? ? ? ? ? 97.60 8 1 3.53 4.44 7732 ? 3943 0.025 27.8 ? ? ? ? ? 96.80 9 1 4.44 29.476 7849 ? 3985 0.019 34.7 ? ? ? ? ? 96.40 10 1 # _refine.entry_id 3I7A _refine.ls_d_res_high 2.060 _refine.ls_d_res_low 29.476 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.640 _refine.ls_number_reflns_obs 20740 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.188 _refine.ls_R_factor_R_work 0.185 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.236 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1067 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 26.543 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.330 _refine.aniso_B[2][2] 0.330 _refine.aniso_B[3][3] -0.650 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.913 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.186 _refine.pdbx_overall_ESU_R_Free 0.171 _refine.overall_SU_ML 0.111 _refine.overall_SU_B 9.235 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 72.72 _refine.B_iso_min 8.93 _refine.occupancy_max 1.00 _refine.occupancy_min 0.30 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2157 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 138 _refine_hist.number_atoms_total 2295 _refine_hist.d_res_high 2.060 _refine_hist.d_res_low 29.476 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 2257 0.016 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1495 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 3085 1.499 1.972 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 3680 0.974 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 296 4.985 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 96 39.764 24.375 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 391 14.872 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 14 18.544 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 365 0.088 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 2521 0.007 0.021 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 433 0.001 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 1423 1.917 3.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 572 0.530 3.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 2310 3.020 5.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 834 5.648 8.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 766 7.811 11.000 ? ? # _refine_ls_shell.d_res_high 2.06 _refine_ls_shell.d_res_low 2.115 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.610 _refine_ls_shell.number_reflns_R_work 1446 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.225 _refine_ls_shell.R_factor_R_free 0.260 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 77 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1523 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3I7A _struct.title 'Crystal structure of Putative metal-dependent phosphohydrolase (YP_926882.1) from Shewanella amazonensis SB2B at 2.06 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;YP_926882.1, Putative metal-dependent phosphohydrolase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, HYDROLASE ; _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.entry_id 3I7A # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MSE A 2 ? ASP A 18 ? MSE A 1 ASP A 17 1 ? 17 HELX_P HELX_P2 2 PRO A 27 ? GLY A 38 ? PRO A 26 GLY A 37 1 ? 12 HELX_P HELX_P3 3 SER A 43 ? GLN A 53 ? SER A 42 GLN A 52 1 ? 11 HELX_P HELX_P4 4 ASP A 54 ? SER A 67 ? ASP A 53 SER A 66 1 ? 14 HELX_P HELX_P5 5 ASN A 78 ? GLY A 87 ? ASN A 77 GLY A 86 1 ? 10 HELX_P HELX_P6 6 GLN A 90 ? ALA A 99 ? GLN A 89 ALA A 98 1 ? 10 HELX_P HELX_P7 7 MSE A 100 ? PHE A 104 ? MSE A 99 PHE A 103 5 ? 5 HELX_P HELX_P8 8 VAL A 111 ? HIS A 140 ? VAL A 110 HIS A 139 1 ? 30 HELX_P HELX_P9 9 ASN A 146 ? HIS A 157 ? ASN A 145 HIS A 156 1 ? 12 HELX_P HELX_P10 10 GLY A 160 ? HIS A 171 ? GLY A 159 HIS A 170 1 ? 12 HELX_P HELX_P11 11 PRO A 172 ? PHE A 175 ? PRO A 171 PHE A 174 5 ? 4 HELX_P HELX_P12 12 THR A 177 ? TRP A 200 ? THR A 176 TRP A 199 1 ? 24 HELX_P HELX_P13 13 ALA A 203 ? TRP A 213 ? ALA A 202 TRP A 212 1 ? 11 HELX_P HELX_P14 14 SER A 224 ? THR A 236 ? SER A 223 THR A 235 1 ? 13 HELX_P HELX_P15 15 ALA A 241 ? ASN A 243 ? ALA A 240 ASN A 242 5 ? 3 HELX_P HELX_P16 16 GLU A 244 ? LYS A 254 ? GLU A 243 LYS A 253 1 ? 11 HELX_P HELX_P17 17 SER A 260 ? GLY A 265 ? SER A 259 GLY A 264 1 ? 6 HELX_P HELX_P18 18 SER A 266 ? GLU A 281 ? SER A 265 GLU A 280 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 2 C ? ? ? 1_555 A SER 3 N ? ? A MSE 1 A SER 2 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale2 covale both ? A ALA 30 C ? ? ? 1_555 A MSE 31 N ? ? A ALA 29 A MSE 30 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale3 covale both ? A MSE 31 C ? ? ? 1_555 A ARG 32 N ? ? A MSE 30 A ARG 31 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale4 covale both ? A ALA 99 C ? ? ? 1_555 A MSE 100 N ? ? A ALA 98 A MSE 99 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale5 covale both ? A MSE 100 C ? ? ? 1_555 A GLU 101 N ? ? A MSE 99 A GLU 100 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale6 covale both ? A GLU 109 C ? ? ? 1_555 A MSE 110 N ? ? A GLU 108 A MSE 109 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale7 covale both ? A MSE 110 C ? ? ? 1_555 A VAL 111 N ? ? A MSE 109 A VAL 110 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale8 covale both ? A VAL 114 C ? ? ? 1_555 A MSE 115 N ? ? A VAL 113 A MSE 114 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale9 covale both ? A MSE 115 C ? ? ? 1_555 A ASP 116 N ? ? A MSE 114 A ASP 115 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale10 covale both ? A GLU 173 C ? ? ? 1_555 A MSE 174 N ? ? A GLU 172 A MSE 173 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale11 covale both ? A MSE 174 C ? ? ? 1_555 A PHE 175 N ? ? A MSE 173 A PHE 174 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale12 covale both ? A LYS 187 C ? ? ? 1_555 A MSE 188 N ? ? A LYS 186 A MSE 187 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale13 covale both ? A MSE 188 C ? ? ? 1_555 A GLN 189 N ? ? A MSE 187 A GLN 188 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale14 covale both ? A VAL 206 C ? ? ? 1_555 A MSE 207 N ? ? A VAL 205 A MSE 206 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale15 covale both ? A MSE 207 C ? ? ? 1_555 A GLU 208 N ? ? A MSE 206 A GLU 207 1_555 ? ? ? ? ? ? ? 1.322 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 3I7A _atom_sites.fract_transf_matrix[1][1] 0.013050 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013050 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017306 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 SER 3 2 2 SER SER A . n A 1 4 ASN 4 3 3 ASN ASN A . n A 1 5 GLU 5 4 4 GLU GLU A . n A 1 6 HIS 6 5 5 HIS HIS A . n A 1 7 GLN 7 6 6 GLN GLN A . n A 1 8 LEU 8 7 7 LEU LEU A . n A 1 9 LEU 9 8 8 LEU LEU A . n A 1 10 VAL 10 9 9 VAL VAL A . n A 1 11 GLY 11 10 10 GLY GLY A . n A 1 12 LEU 12 11 11 LEU LEU A . n A 1 13 LEU 13 12 12 LEU LEU A . n A 1 14 LYS 14 13 13 LYS LYS A . n A 1 15 LYS 15 14 14 LYS LYS A . n A 1 16 LEU 16 15 15 LEU LEU A . n A 1 17 LYS 17 16 16 LYS LYS A . n A 1 18 ASP 18 17 17 ASP ASP A . n A 1 19 ASP 19 18 18 ASP ASP A . n A 1 20 ALA 20 19 19 ALA ALA A . n A 1 21 LEU 21 20 20 LEU LEU A . n A 1 22 ILE 22 21 21 ILE ILE A . n A 1 23 LEU 23 22 22 LEU LEU A . n A 1 24 PRO 24 23 23 PRO PRO A . n A 1 25 THR 25 24 24 THR THR A . n A 1 26 LEU 26 25 25 LEU LEU A . n A 1 27 PRO 27 26 26 PRO PRO A . n A 1 28 GLU 28 27 27 GLU GLU A . n A 1 29 VAL 29 28 28 VAL VAL A . n A 1 30 ALA 30 29 29 ALA ALA A . n A 1 31 MSE 31 30 30 MSE MSE A . n A 1 32 ARG 32 31 31 ARG ARG A . n A 1 33 VAL 33 32 32 VAL VAL A . n A 1 34 GLN 34 33 33 GLN GLN A . n A 1 35 GLU 35 34 34 GLU GLU A . n A 1 36 VAL 36 35 35 VAL VAL A . n A 1 37 VAL 37 36 36 VAL VAL A . n A 1 38 GLY 38 37 37 GLY GLY A . n A 1 39 ARG 39 38 38 ARG ARG A . n A 1 40 PRO 40 39 39 PRO PRO A . n A 1 41 ASP 41 40 40 ASP ASP A . n A 1 42 SER 42 41 41 SER SER A . n A 1 43 SER 43 42 42 SER SER A . n A 1 44 LEU 44 43 43 LEU LEU A . n A 1 45 LYS 45 44 44 LYS LYS A . n A 1 46 GLN 46 45 45 GLN GLN A . n A 1 47 VAL 47 46 46 VAL VAL A . n A 1 48 ALA 48 47 47 ALA ALA A . n A 1 49 GLU 49 48 48 GLU GLU A . n A 1 50 ILE 50 49 49 ILE ILE A . n A 1 51 ILE 51 50 50 ILE ILE A . n A 1 52 GLY 52 51 51 GLY GLY A . n A 1 53 GLN 53 52 52 GLN GLN A . n A 1 54 ASP 54 53 53 ASP ASP A . n A 1 55 ALA 55 54 54 ALA ALA A . n A 1 56 ALA 56 55 55 ALA ALA A . n A 1 57 ILE 57 56 56 ILE ILE A . n A 1 58 SER 58 57 57 SER SER A . n A 1 59 ALA 59 58 58 ALA ALA A . n A 1 60 ARG 60 59 59 ARG ARG A . n A 1 61 ILE 61 60 60 ILE ILE A . n A 1 62 ILE 62 61 61 ILE ILE A . n A 1 63 LYS 63 62 62 LYS LYS A . n A 1 64 VAL 64 63 63 VAL VAL A . n A 1 65 ALA 65 64 64 ALA ALA A . n A 1 66 ASN 66 65 65 ASN ASN A . n A 1 67 SER 67 66 66 SER SER A . n A 1 68 ALA 68 67 67 ALA ALA A . n A 1 69 LEU 69 68 68 LEU LEU A . n A 1 70 TYR 70 69 69 TYR TYR A . n A 1 71 SER 71 70 70 SER SER A . n A 1 72 ARG 72 71 71 ARG ARG A . n A 1 73 GLY 73 72 72 GLY GLY A . n A 1 74 VAL 74 73 73 VAL VAL A . n A 1 75 PRO 75 74 74 PRO PRO A . n A 1 76 ALA 76 75 75 ALA ALA A . n A 1 77 GLU 77 76 76 GLU GLU A . n A 1 78 ASN 78 77 77 ASN ASN A . n A 1 79 ILE 79 78 78 ILE ILE A . n A 1 80 ASN 80 79 79 ASN ASN A . n A 1 81 SER 81 80 80 SER SER A . n A 1 82 ALA 82 81 81 ALA ALA A . n A 1 83 VAL 83 82 82 VAL VAL A . n A 1 84 THR 84 83 83 THR THR A . n A 1 85 ARG 85 84 84 ARG ARG A . n A 1 86 ILE 86 85 85 ILE ILE A . n A 1 87 GLY 87 86 86 GLY GLY A . n A 1 88 LEU 88 87 87 LEU LEU A . n A 1 89 THR 89 88 88 THR THR A . n A 1 90 GLN 90 89 89 GLN GLN A . n A 1 91 ILE 91 90 90 ILE ILE A . n A 1 92 LYS 92 91 91 LYS LYS A . n A 1 93 SER 93 92 92 SER SER A . n A 1 94 ILE 94 93 93 ILE ILE A . n A 1 95 ALA 95 94 94 ALA ALA A . n A 1 96 THR 96 95 95 THR THR A . n A 1 97 SER 97 96 96 SER SER A . n A 1 98 VAL 98 97 97 VAL VAL A . n A 1 99 ALA 99 98 98 ALA ALA A . n A 1 100 MSE 100 99 99 MSE MSE A . n A 1 101 GLU 101 100 100 GLU GLU A . n A 1 102 GLN 102 101 101 GLN GLN A . n A 1 103 LEU 103 102 102 LEU LEU A . n A 1 104 PHE 104 103 103 PHE PHE A . n A 1 105 ILE 105 104 104 ILE ILE A . n A 1 106 SER 106 105 105 SER SER A . n A 1 107 THR 107 106 106 THR THR A . n A 1 108 ASN 108 107 107 ASN ASN A . n A 1 109 GLU 109 108 108 GLU GLU A . n A 1 110 MSE 110 109 109 MSE MSE A . n A 1 111 VAL 111 110 110 VAL VAL A . n A 1 112 TRP 112 111 111 TRP TRP A . n A 1 113 GLU 113 112 112 GLU GLU A . n A 1 114 VAL 114 113 113 VAL VAL A . n A 1 115 MSE 115 114 114 MSE MSE A . n A 1 116 ASP 116 115 115 ASP ASP A . n A 1 117 GLU 117 116 116 GLU GLU A . n A 1 118 VAL 118 117 117 VAL VAL A . n A 1 119 TRP 119 118 118 TRP TRP A . n A 1 120 ARG 120 119 119 ARG ARG A . n A 1 121 THR 121 120 120 THR THR A . n A 1 122 SER 122 121 121 SER SER A . n A 1 123 ILE 123 122 122 ILE ILE A . n A 1 124 ASP 124 123 123 ASP ASP A . n A 1 125 VAL 125 124 124 VAL VAL A . n A 1 126 THR 126 125 125 THR THR A . n A 1 127 ALA 127 126 126 ALA ALA A . n A 1 128 ALA 128 127 127 ALA ALA A . n A 1 129 ALA 129 128 128 ALA ALA A . n A 1 130 CYS 130 129 129 CYS CYS A . n A 1 131 SER 131 130 130 SER SER A . n A 1 132 LEU 132 131 131 LEU LEU A . n A 1 133 LEU 133 132 132 LEU LEU A . n A 1 134 GLN 134 133 133 GLN GLN A . n A 1 135 ILE 135 134 134 ILE ILE A . n A 1 136 TYR 136 135 135 TYR TYR A . n A 1 137 ASN 137 136 136 ASN ASN A . n A 1 138 LYS 138 137 137 LYS LYS A . n A 1 139 LYS 139 138 138 LYS LYS A . n A 1 140 HIS 140 139 139 HIS HIS A . n A 1 141 PRO 141 140 140 PRO PRO A . n A 1 142 GLY 142 141 141 GLY GLY A . n A 1 143 SER 143 142 142 SER SER A . n A 1 144 GLY 144 143 143 GLY GLY A . n A 1 145 LEU 145 144 144 LEU LEU A . n A 1 146 ASN 146 145 145 ASN ASN A . n A 1 147 TYR 147 146 146 TYR TYR A . n A 1 148 ASP 148 147 147 ASP ASP A . n A 1 149 THR 149 148 148 THR THR A . n A 1 150 LEU 150 149 149 LEU LEU A . n A 1 151 THR 151 150 150 THR THR A . n A 1 152 LEU 152 151 151 LEU LEU A . n A 1 153 ALA 153 152 152 ALA ALA A . n A 1 154 GLY 154 153 153 GLY GLY A . n A 1 155 LEU 155 154 154 LEU LEU A . n A 1 156 VAL 156 155 155 VAL VAL A . n A 1 157 HIS 157 156 156 HIS HIS A . n A 1 158 ASN 158 157 157 ASN ASN A . n A 1 159 ILE 159 158 158 ILE ILE A . n A 1 160 GLY 160 159 159 GLY GLY A . n A 1 161 ALA 161 160 160 ALA ALA A . n A 1 162 LEU 162 161 161 LEU LEU A . n A 1 163 PRO 163 162 162 PRO PRO A . n A 1 164 VAL 164 163 163 VAL VAL A . n A 1 165 LEU 165 164 164 LEU LEU A . n A 1 166 THR 166 165 165 THR THR A . n A 1 167 GLU 167 166 166 GLU GLU A . n A 1 168 ALA 168 167 167 ALA ALA A . n A 1 169 GLU 169 168 168 GLU GLU A . n A 1 170 ALA 170 169 169 ALA ALA A . n A 1 171 HIS 171 170 170 HIS HIS A . n A 1 172 PRO 172 171 171 PRO PRO A . n A 1 173 GLU 173 172 172 GLU GLU A . n A 1 174 MSE 174 173 173 MSE MSE A . n A 1 175 PHE 175 174 174 PHE PHE A . n A 1 176 THR 176 175 175 THR THR A . n A 1 177 THR 177 176 176 THR THR A . n A 1 178 ILE 178 177 177 ILE ILE A . n A 1 179 GLU 179 178 178 GLU GLU A . n A 1 180 HIS 180 179 179 HIS HIS A . n A 1 181 LEU 181 180 180 LEU LEU A . n A 1 182 ARG 182 181 181 ARG ARG A . n A 1 183 SER 183 182 182 SER SER A . n A 1 184 LEU 184 183 183 LEU LEU A . n A 1 185 VAL 185 184 184 VAL VAL A . n A 1 186 ARG 186 185 185 ARG ARG A . n A 1 187 LYS 187 186 186 LYS LYS A . n A 1 188 MSE 188 187 187 MSE MSE A . n A 1 189 GLN 189 188 188 GLN GLN A . n A 1 190 GLY 190 189 189 GLY GLY A . n A 1 191 PRO 191 190 190 PRO PRO A . n A 1 192 ILE 192 191 191 ILE ILE A . n A 1 193 GLY 193 192 192 GLY GLY A . n A 1 194 ARG 194 193 193 ARG ARG A . n A 1 195 ALA 195 194 194 ALA ALA A . n A 1 196 VAL 196 195 195 VAL VAL A . n A 1 197 LEU 197 196 196 LEU LEU A . n A 1 198 LYS 198 197 197 LYS LYS A . n A 1 199 SER 199 198 198 SER SER A . n A 1 200 TRP 200 199 199 TRP TRP A . n A 1 201 ASP 201 200 200 ASP ASP A . n A 1 202 PHE 202 201 201 PHE PHE A . n A 1 203 ALA 203 202 202 ALA ALA A . n A 1 204 PRO 204 203 203 PRO PRO A . n A 1 205 GLU 205 204 204 GLU GLU A . n A 1 206 VAL 206 205 205 VAL VAL A . n A 1 207 MSE 207 206 206 MSE MSE A . n A 1 208 GLU 208 207 207 GLU GLU A . n A 1 209 VAL 209 208 208 VAL VAL A . n A 1 210 VAL 210 209 209 VAL VAL A . n A 1 211 GLU 211 210 210 GLU GLU A . n A 1 212 ARG 212 211 211 ARG ARG A . n A 1 213 TRP 213 212 212 TRP TRP A . n A 1 214 ALA 214 213 213 ALA ALA A . n A 1 215 ASP 215 214 214 ASP ASP A . n A 1 216 LEU 216 215 215 LEU LEU A . n A 1 217 PRO 217 216 216 PRO PRO A . n A 1 218 TYR 218 217 217 TYR TYR A . n A 1 219 LEU 219 218 218 LEU LEU A . n A 1 220 GLY 220 219 219 GLY GLY A . n A 1 221 ASP 221 220 220 ASP ASP A . n A 1 222 HIS 222 221 221 HIS HIS A . n A 1 223 VAL 223 222 222 VAL VAL A . n A 1 224 SER 224 223 223 SER SER A . n A 1 225 TYR 225 224 224 TYR TYR A . n A 1 226 LEU 226 225 225 LEU LEU A . n A 1 227 ASP 227 226 226 ASP ASP A . n A 1 228 PHE 228 227 227 PHE PHE A . n A 1 229 ILE 229 228 228 ILE ILE A . n A 1 230 ARG 230 229 229 ARG ARG A . n A 1 231 ALA 231 230 230 ALA ALA A . n A 1 232 ALA 232 231 231 ALA ALA A . n A 1 233 ALA 233 232 232 ALA ALA A . n A 1 234 PHE 234 233 233 PHE PHE A . n A 1 235 TYR 235 234 234 TYR TYR A . n A 1 236 THR 236 235 235 THR THR A . n A 1 237 GLY 237 236 236 GLY GLY A . n A 1 238 GLU 238 237 237 GLU GLU A . n A 1 239 LEU 239 238 238 LEU LEU A . n A 1 240 ARG 240 239 239 ARG ARG A . n A 1 241 ALA 241 240 240 ALA ALA A . n A 1 242 GLY 242 241 241 GLY GLY A . n A 1 243 ASN 243 242 242 ASN ASN A . n A 1 244 GLU 244 243 243 GLU GLU A . n A 1 245 LEU 245 244 244 LEU LEU A . n A 1 246 GLU 246 245 245 GLU GLU A . n A 1 247 GLN 247 246 246 GLN GLN A . n A 1 248 ARG 248 247 247 ARG ARG A . n A 1 249 LEU 249 248 248 LEU LEU A . n A 1 250 ASP 250 249 249 ASP ASP A . n A 1 251 VAL 251 250 250 VAL VAL A . n A 1 252 PHE 252 251 251 PHE PHE A . n A 1 253 VAL 253 252 252 VAL VAL A . n A 1 254 LYS 254 253 253 LYS LYS A . n A 1 255 ARG 255 254 254 ARG ARG A . n A 1 256 GLY 256 255 255 GLY GLY A . n A 1 257 LEU 257 256 256 LEU LEU A . n A 1 258 PRO 258 257 257 PRO PRO A . n A 1 259 VAL 259 258 258 VAL VAL A . n A 1 260 SER 260 259 259 SER SER A . n A 1 261 PRO 261 260 260 PRO PRO A . n A 1 262 GLU 262 261 261 GLU GLU A . n A 1 263 ASP 263 262 262 ASP ASP A . n A 1 264 LEU 264 263 263 LEU LEU A . n A 1 265 GLY 265 264 264 GLY GLY A . n A 1 266 SER 266 265 265 SER SER A . n A 1 267 ASP 267 266 266 ASP ASP A . n A 1 268 ALA 268 267 267 ALA ALA A . n A 1 269 PHE 269 268 268 PHE PHE A . n A 1 270 LEU 270 269 269 LEU LEU A . n A 1 271 ASP 271 270 270 ASP ASP A . n A 1 272 SER 272 271 271 SER SER A . n A 1 273 TYR 273 272 272 TYR TYR A . n A 1 274 HIS 274 273 273 HIS HIS A . n A 1 275 SER 275 274 274 SER SER A . n A 1 276 ILE 276 275 275 ILE ILE A . n A 1 277 LYS 277 276 276 LYS LYS A . n A 1 278 ALA 278 277 277 ALA ALA A . n A 1 279 SER 279 278 278 SER SER A . n A 1 280 TYR 280 279 279 TYR TYR A . n A 1 281 GLU 281 280 280 GLU GLU A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 281 1 HOH HOH A . B 2 HOH 2 282 2 HOH HOH A . B 2 HOH 3 283 3 HOH HOH A . B 2 HOH 4 284 4 HOH HOH A . B 2 HOH 5 285 5 HOH HOH A . B 2 HOH 6 286 6 HOH HOH A . B 2 HOH 7 287 7 HOH HOH A . B 2 HOH 8 288 8 HOH HOH A . B 2 HOH 9 289 9 HOH HOH A . B 2 HOH 10 290 10 HOH HOH A . B 2 HOH 11 291 11 HOH HOH A . B 2 HOH 12 292 12 HOH HOH A . B 2 HOH 13 293 13 HOH HOH A . B 2 HOH 14 294 14 HOH HOH A . B 2 HOH 15 295 15 HOH HOH A . B 2 HOH 16 296 16 HOH HOH A . B 2 HOH 17 297 17 HOH HOH A . B 2 HOH 18 298 18 HOH HOH A . B 2 HOH 19 299 19 HOH HOH A . B 2 HOH 20 300 20 HOH HOH A . B 2 HOH 21 301 21 HOH HOH A . B 2 HOH 22 302 22 HOH HOH A . B 2 HOH 23 303 23 HOH HOH A . B 2 HOH 24 304 24 HOH HOH A . B 2 HOH 25 305 25 HOH HOH A . B 2 HOH 26 306 26 HOH HOH A . B 2 HOH 27 307 27 HOH HOH A . B 2 HOH 28 308 28 HOH HOH A . B 2 HOH 29 309 29 HOH HOH A . B 2 HOH 30 310 30 HOH HOH A . B 2 HOH 31 311 31 HOH HOH A . B 2 HOH 32 312 32 HOH HOH A . B 2 HOH 33 313 33 HOH HOH A . B 2 HOH 34 314 34 HOH HOH A . B 2 HOH 35 315 35 HOH HOH A . B 2 HOH 36 316 36 HOH HOH A . B 2 HOH 37 317 37 HOH HOH A . B 2 HOH 38 318 38 HOH HOH A . B 2 HOH 39 319 39 HOH HOH A . B 2 HOH 40 320 40 HOH HOH A . B 2 HOH 41 321 41 HOH HOH A . B 2 HOH 42 322 42 HOH HOH A . B 2 HOH 43 323 43 HOH HOH A . B 2 HOH 44 324 44 HOH HOH A . B 2 HOH 45 325 45 HOH HOH A . B 2 HOH 46 326 46 HOH HOH A . B 2 HOH 47 327 47 HOH HOH A . B 2 HOH 48 328 48 HOH HOH A . B 2 HOH 49 329 49 HOH HOH A . B 2 HOH 50 330 50 HOH HOH A . B 2 HOH 51 331 51 HOH HOH A . B 2 HOH 52 332 52 HOH HOH A . B 2 HOH 53 333 53 HOH HOH A . B 2 HOH 54 334 54 HOH HOH A . B 2 HOH 55 335 55 HOH HOH A . B 2 HOH 56 336 56 HOH HOH A . B 2 HOH 57 337 57 HOH HOH A . B 2 HOH 58 338 58 HOH HOH A . B 2 HOH 59 339 59 HOH HOH A . B 2 HOH 60 340 60 HOH HOH A . B 2 HOH 61 341 61 HOH HOH A . B 2 HOH 62 342 62 HOH HOH A . B 2 HOH 63 343 63 HOH HOH A . B 2 HOH 64 344 64 HOH HOH A . B 2 HOH 65 345 65 HOH HOH A . B 2 HOH 66 346 66 HOH HOH A . B 2 HOH 67 347 67 HOH HOH A . B 2 HOH 68 348 68 HOH HOH A . B 2 HOH 69 349 69 HOH HOH A . B 2 HOH 70 350 70 HOH HOH A . B 2 HOH 71 351 71 HOH HOH A . B 2 HOH 72 352 72 HOH HOH A . B 2 HOH 73 353 73 HOH HOH A . B 2 HOH 74 354 74 HOH HOH A . B 2 HOH 75 355 75 HOH HOH A . B 2 HOH 76 356 76 HOH HOH A . B 2 HOH 77 357 77 HOH HOH A . B 2 HOH 78 358 78 HOH HOH A . B 2 HOH 79 359 79 HOH HOH A . B 2 HOH 80 360 80 HOH HOH A . B 2 HOH 81 361 81 HOH HOH A . B 2 HOH 82 362 82 HOH HOH A . B 2 HOH 83 363 83 HOH HOH A . B 2 HOH 84 364 84 HOH HOH A . B 2 HOH 85 365 85 HOH HOH A . B 2 HOH 86 366 86 HOH HOH A . B 2 HOH 87 367 87 HOH HOH A . B 2 HOH 88 368 88 HOH HOH A . B 2 HOH 89 369 89 HOH HOH A . B 2 HOH 90 370 90 HOH HOH A . B 2 HOH 91 371 91 HOH HOH A . B 2 HOH 92 372 92 HOH HOH A . B 2 HOH 93 373 93 HOH HOH A . B 2 HOH 94 374 94 HOH HOH A . B 2 HOH 95 375 95 HOH HOH A . B 2 HOH 96 376 96 HOH HOH A . B 2 HOH 97 377 97 HOH HOH A . B 2 HOH 98 378 98 HOH HOH A . B 2 HOH 99 379 99 HOH HOH A . B 2 HOH 100 380 100 HOH HOH A . B 2 HOH 101 381 101 HOH HOH A . B 2 HOH 102 382 102 HOH HOH A . B 2 HOH 103 383 103 HOH HOH A . B 2 HOH 104 384 104 HOH HOH A . B 2 HOH 105 385 105 HOH HOH A . B 2 HOH 106 386 106 HOH HOH A . B 2 HOH 107 387 107 HOH HOH A . B 2 HOH 108 388 108 HOH HOH A . B 2 HOH 109 389 109 HOH HOH A . B 2 HOH 110 390 110 HOH HOH A . B 2 HOH 111 391 111 HOH HOH A . B 2 HOH 112 392 112 HOH HOH A . B 2 HOH 113 393 113 HOH HOH A . B 2 HOH 114 394 114 HOH HOH A . B 2 HOH 115 395 115 HOH HOH A . B 2 HOH 116 396 116 HOH HOH A . B 2 HOH 117 397 117 HOH HOH A . B 2 HOH 118 398 118 HOH HOH A . B 2 HOH 119 399 119 HOH HOH A . B 2 HOH 120 400 120 HOH HOH A . B 2 HOH 121 401 121 HOH HOH A . B 2 HOH 122 402 122 HOH HOH A . B 2 HOH 123 403 123 HOH HOH A . B 2 HOH 124 404 124 HOH HOH A . B 2 HOH 125 405 125 HOH HOH A . B 2 HOH 126 406 126 HOH HOH A . B 2 HOH 127 407 127 HOH HOH A . B 2 HOH 128 408 128 HOH HOH A . B 2 HOH 129 409 129 HOH HOH A . B 2 HOH 130 410 130 HOH HOH A . B 2 HOH 131 411 131 HOH HOH A . B 2 HOH 132 412 132 HOH HOH A . B 2 HOH 133 413 133 HOH HOH A . B 2 HOH 134 414 134 HOH HOH A . B 2 HOH 135 415 135 HOH HOH A . B 2 HOH 136 416 136 HOH HOH A . B 2 HOH 137 417 137 HOH HOH A . B 2 HOH 138 418 138 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 31 A MSE 30 ? MET SELENOMETHIONINE 3 A MSE 100 A MSE 99 ? MET SELENOMETHIONINE 4 A MSE 110 A MSE 109 ? MET SELENOMETHIONINE 5 A MSE 115 A MSE 114 ? MET SELENOMETHIONINE 6 A MSE 174 A MSE 173 ? MET SELENOMETHIONINE 7 A MSE 188 A MSE 187 ? MET SELENOMETHIONINE 8 A MSE 207 A MSE 206 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-07-21 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 12.6305 _pdbx_refine_tls.origin_y 28.8356 _pdbx_refine_tls.origin_z 29.1566 _pdbx_refine_tls.T[1][1] 0.0348 _pdbx_refine_tls.T[2][2] 0.0399 _pdbx_refine_tls.T[3][3] 0.0258 _pdbx_refine_tls.T[1][2] 0.0118 _pdbx_refine_tls.T[1][3] 0.0154 _pdbx_refine_tls.T[2][3] 0.0179 _pdbx_refine_tls.L[1][1] 1.2445 _pdbx_refine_tls.L[2][2] 1.0855 _pdbx_refine_tls.L[3][3] 0.3832 _pdbx_refine_tls.L[1][2] -0.6504 _pdbx_refine_tls.L[1][3] 0.0422 _pdbx_refine_tls.L[2][3] 0.1817 _pdbx_refine_tls.S[1][1] -0.0192 _pdbx_refine_tls.S[2][2] -0.0460 _pdbx_refine_tls.S[3][3] 0.0652 _pdbx_refine_tls.S[1][2] -0.0003 _pdbx_refine_tls.S[1][3] 0.0095 _pdbx_refine_tls.S[2][3] -0.0618 _pdbx_refine_tls.S[2][1] 0.0230 _pdbx_refine_tls.S[3][1] 0.0406 _pdbx_refine_tls.S[3][2] 0.0174 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 280 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0053 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3I7A _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (RESIDUES 1-280) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 223 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -144.34 _pdbx_validate_torsion.psi -159.16 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MSE 1 ? CG ? A MSE 2 CG 2 1 Y 1 A MSE 1 ? SE ? A MSE 2 SE 3 1 Y 1 A MSE 1 ? CE ? A MSE 2 CE 4 1 Y 1 A GLU 27 ? CD ? A GLU 28 CD 5 1 Y 1 A GLU 27 ? OE1 ? A GLU 28 OE1 6 1 Y 1 A GLU 27 ? OE2 ? A GLU 28 OE2 7 1 Y 1 A GLN 33 ? CG ? A GLN 34 CG 8 1 Y 1 A GLN 33 ? CD ? A GLN 34 CD 9 1 Y 1 A GLN 33 ? OE1 ? A GLN 34 OE1 10 1 Y 1 A GLN 33 ? NE2 ? A GLN 34 NE2 11 1 Y 1 A LYS 197 ? CD ? A LYS 198 CD 12 1 Y 1 A LYS 197 ? CE ? A LYS 198 CE 13 1 Y 1 A LYS 197 ? NZ ? A LYS 198 NZ 14 1 Y 1 A ARG 239 ? NE ? A ARG 240 NE 15 1 Y 1 A ARG 239 ? CZ ? A ARG 240 CZ 16 1 Y 1 A ARG 239 ? NH1 ? A ARG 240 NH1 17 1 Y 1 A ARG 239 ? NH2 ? A ARG 240 NH2 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id 0 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #