data_3I8A # _entry.id 3I8A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3I8A pdb_00003i8a 10.2210/pdb3i8a/pdb RCSB RCSB054089 ? ? WWPDB D_1000054089 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3FQ0 . unspecified PDB 3FQO . unspecified # _pdbx_database_status.entry_id 3I8A _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-07-09 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Frey, K.M.' 1 'Lombardo, M.N.' 2 'Anderson, A.C.' 3 # _citation.id primary _citation.title ;Towards the understanding of resistance mechanisms in clinically isolated trimethoprim-resistant, methicillin-resistant Staphylococcus aureus dihydrofolate reductase. ; _citation.journal_abbrev J.Struct.Biol. _citation.journal_volume 170 _citation.page_first 93 _citation.page_last 97 _citation.year 2010 _citation.journal_id_ASTM JSBIEM _citation.country US _citation.journal_id_ISSN 1047-8477 _citation.journal_id_CSD 0803 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20026215 _citation.pdbx_database_id_DOI 10.1016/j.jsb.2009.12.011 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Frey, K.M.' 1 ? primary 'Lombardo, M.N.' 2 ? primary 'Wright, D.L.' 3 ? primary 'Anderson, A.C.' 4 ? # _cell.length_a 79.164 _cell.length_b 79.164 _cell.length_c 108.960 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3I8A _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.entry_id 3I8A _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 178 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Dihydrofolate reductase' 18007.512 1 1.5.1.3 'H30N, H30N' ? ? 2 non-polymer syn '5-[3-(2,5-dimethoxyphenyl)prop-1-yn-1-yl]-6-ethylpyrimidine-2,4-diamine' 312.366 1 ? ? ? ? 3 non-polymer syn 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 745.421 1 ? ? ? ? 4 water nat water 18.015 43 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name DHFR # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TLSILVAHDLQRVIGFENQLPWHLPNDLKNVKKLSTGHTLVMGRKTFESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSIE DIYQLPGHVFIFGGQTLYEEMIDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRK ; _entity_poly.pdbx_seq_one_letter_code_can ;TLSILVAHDLQRVIGFENQLPWHLPNDLKNVKKLSTGHTLVMGRKTFESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSIE DIYQLPGHVFIFGGQTLYEEMIDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRK ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 LEU n 1 3 SER n 1 4 ILE n 1 5 LEU n 1 6 VAL n 1 7 ALA n 1 8 HIS n 1 9 ASP n 1 10 LEU n 1 11 GLN n 1 12 ARG n 1 13 VAL n 1 14 ILE n 1 15 GLY n 1 16 PHE n 1 17 GLU n 1 18 ASN n 1 19 GLN n 1 20 LEU n 1 21 PRO n 1 22 TRP n 1 23 HIS n 1 24 LEU n 1 25 PRO n 1 26 ASN n 1 27 ASP n 1 28 LEU n 1 29 LYS n 1 30 ASN n 1 31 VAL n 1 32 LYS n 1 33 LYS n 1 34 LEU n 1 35 SER n 1 36 THR n 1 37 GLY n 1 38 HIS n 1 39 THR n 1 40 LEU n 1 41 VAL n 1 42 MET n 1 43 GLY n 1 44 ARG n 1 45 LYS n 1 46 THR n 1 47 PHE n 1 48 GLU n 1 49 SER n 1 50 ILE n 1 51 GLY n 1 52 LYS n 1 53 PRO n 1 54 LEU n 1 55 PRO n 1 56 ASN n 1 57 ARG n 1 58 ARG n 1 59 ASN n 1 60 VAL n 1 61 VAL n 1 62 LEU n 1 63 THR n 1 64 SER n 1 65 ASP n 1 66 THR n 1 67 SER n 1 68 PHE n 1 69 ASN n 1 70 VAL n 1 71 GLU n 1 72 GLY n 1 73 VAL n 1 74 ASP n 1 75 VAL n 1 76 ILE n 1 77 HIS n 1 78 SER n 1 79 ILE n 1 80 GLU n 1 81 ASP n 1 82 ILE n 1 83 TYR n 1 84 GLN n 1 85 LEU n 1 86 PRO n 1 87 GLY n 1 88 HIS n 1 89 VAL n 1 90 PHE n 1 91 ILE n 1 92 PHE n 1 93 GLY n 1 94 GLY n 1 95 GLN n 1 96 THR n 1 97 LEU n 1 98 TYR n 1 99 GLU n 1 100 GLU n 1 101 MET n 1 102 ILE n 1 103 ASP n 1 104 LYS n 1 105 VAL n 1 106 ASP n 1 107 ASP n 1 108 MET n 1 109 TYR n 1 110 ILE n 1 111 THR n 1 112 VAL n 1 113 ILE n 1 114 GLU n 1 115 GLY n 1 116 LYS n 1 117 PHE n 1 118 ARG n 1 119 GLY n 1 120 ASP n 1 121 THR n 1 122 PHE n 1 123 PHE n 1 124 PRO n 1 125 PRO n 1 126 TYR n 1 127 THR n 1 128 PHE n 1 129 GLU n 1 130 ASP n 1 131 TRP n 1 132 GLU n 1 133 VAL n 1 134 ALA n 1 135 SER n 1 136 SER n 1 137 VAL n 1 138 GLU n 1 139 GLY n 1 140 LYS n 1 141 LEU n 1 142 ASP n 1 143 GLU n 1 144 LYS n 1 145 ASN n 1 146 THR n 1 147 ILE n 1 148 PRO n 1 149 HIS n 1 150 THR n 1 151 PHE n 1 152 LEU n 1 153 HIS n 1 154 LEU n 1 155 ILE n 1 156 ARG n 1 157 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'dfrB, folA' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1280 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET41 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DYR_STAAU _struct_ref.pdbx_db_accession P0A017 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTGHTLVMGRKTFESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSIE DIYQLPGHVFIFGGQTLFEEMIDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRK ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3I8A _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 157 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0A017 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 158 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 157 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3I8A ASN X 30 ? UNP P0A017 HIS 31 'engineered mutation' 30 1 1 3I8A TYR X 98 ? UNP P0A017 PHE 99 'engineered mutation' 98 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 N22 non-polymer . '5-[3-(2,5-dimethoxyphenyl)prop-1-yn-1-yl]-6-ethylpyrimidine-2,4-diamine' ? 'C17 H20 N4 O2' 312.366 NDP non-polymer . 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' ? 'C21 H30 N7 O17 P3' 745.421 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3I8A _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.74 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 55.05 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '15% PEG 10,000, 150 mM sodium acetate, 100 mM MES pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 77.2 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-01-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0809 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0809 _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A # _reflns.entry_id 3I8A _reflns.observed_criterion_sigma_F 3.00 _reflns.observed_criterion_sigma_I 3.00 _reflns.d_resolution_high 2.41 _reflns.d_resolution_low 37.22 _reflns.number_all 7504 _reflns.number_obs 7504 _reflns.percent_possible_obs 95.01 _reflns.pdbx_Rmerge_I_obs 0.040 _reflns.pdbx_Rsym_value 0.040 _reflns.pdbx_netI_over_sigmaI 1.1 _reflns.B_iso_Wilson_estimate 15.689 _reflns.pdbx_redundancy 10.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.410 _reflns_shell.d_res_low 2.472 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100.00 _reflns_shell.Rmerge_I_obs 0.074 _reflns_shell.meanI_over_sigI_obs 0.8 _reflns_shell.pdbx_Rsym_value 0.074 _reflns_shell.pdbx_redundancy 10.1 _reflns_shell.number_unique_all 560 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3I8A _refine.ls_d_res_high 2.410 _refine.ls_d_res_low 37.220 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 95.010 _refine.ls_number_reflns_obs 7504 _refine.ls_number_reflns_all 7504 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all 0.208 _refine.ls_R_factor_obs 0.208 _refine.ls_R_factor_R_work 0.206 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.261 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.600 _refine.ls_number_reflns_R_free 363 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 15.662 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.010 _refine.aniso_B[2][2] -0.010 _refine.aniso_B[3][3] 0.020 _refine.aniso_B[1][2] -0.010 _refine.aniso_B[1][3] -0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.925 _refine.correlation_coeff_Fo_to_Fc_free 0.865 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.434 _refine.pdbx_overall_ESU_R_Free 0.280 _refine.overall_SU_ML 0.180 _refine.overall_SU_B 7.567 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 3FQO _refine.pdbx_method_to_determine_struct 'Difference Fourier Methods' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 40.31 _refine.B_iso_min 2.00 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1272 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 71 _refine_hist.number_atoms_solvent 43 _refine_hist.number_atoms_total 1386 _refine_hist.d_res_high 2.410 _refine_hist.d_res_low 37.220 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1380 0.014 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1882 1.640 2.016 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 156 7.585 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 62 37.063 24.355 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 226 18.586 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 6 20.893 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 207 0.105 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1029 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 577 0.211 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 907 0.308 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 72 0.186 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 26 0.215 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 4 0.162 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 811 0.753 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1282 1.314 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 673 1.777 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 600 2.709 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.410 _refine_ls_shell.d_res_low 2.472 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 560 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.237 _refine_ls_shell.R_factor_R_free 0.206 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 26 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 586 _refine_ls_shell.number_reflns_obs 7504 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3I8A _struct.title ;Staphylococcus aureus H30N, F98Y Dihydrofolate Reductase complexed with NADPH and 2,4-diamino-5-(3-(2,5-dimethoxyphenyl)prop-1-ynyl)-6-ethylpyrimidine (UCP120B) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3I8A _struct_keywords.pdbx_keywords 'OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR' _struct_keywords.text 'NADPH, One-carbon metabolism, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 24 ? THR A 36 ? LEU X 24 THR X 36 1 ? 13 HELX_P HELX_P2 2 ARG A 44 ? GLY A 51 ? ARG X 44 GLY X 51 1 ? 8 HELX_P HELX_P3 3 SER A 78 ? LEU A 85 ? SER X 78 LEU X 85 5 ? 8 HELX_P HELX_P4 4 GLY A 94 ? ILE A 102 ? GLY X 94 ILE X 102 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 93 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 93 _struct_mon_prot_cis.auth_asym_id X _struct_mon_prot_cis.pdbx_label_comp_id_2 GLY _struct_mon_prot_cis.pdbx_label_seq_id_2 94 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 GLY _struct_mon_prot_cis.pdbx_auth_seq_id_2 94 _struct_mon_prot_cis.pdbx_auth_asym_id_2 X _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.82 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 74 ? ILE A 76 ? ASP X 74 ILE X 76 A 2 ARG A 58 ? LEU A 62 ? ARG X 58 LEU X 62 A 3 THR A 39 ? GLY A 43 ? THR X 39 GLY X 43 A 4 VAL A 89 ? GLY A 93 ? VAL X 89 GLY X 93 A 5 LEU A 2 ? ASP A 9 ? LEU X 2 ASP X 9 A 6 ASP A 107 ? ILE A 113 ? ASP X 107 ILE X 113 A 7 HIS A 149 ? ARG A 156 ? HIS X 149 ARG X 156 A 8 TRP A 131 ? GLU A 138 ? TRP X 131 GLU X 138 B 1 VAL A 13 ? GLY A 15 ? VAL X 13 GLY X 15 B 2 THR A 121 ? PHE A 122 ? THR X 121 PHE X 122 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASP A 74 ? O ASP X 74 N VAL A 61 ? N VAL X 61 A 2 3 O VAL A 60 ? O VAL X 60 N LEU A 40 ? N LEU X 40 A 3 4 N VAL A 41 ? N VAL X 41 O PHE A 92 ? O PHE X 92 A 4 5 O ILE A 91 ? O ILE X 91 N SER A 3 ? N SER X 3 A 5 6 N HIS A 8 ? N HIS X 8 O ILE A 113 ? O ILE X 113 A 6 7 N ILE A 110 ? N ILE X 110 O LEU A 152 ? O LEU X 152 A 7 8 O ILE A 155 ? O ILE X 155 N GLU A 132 ? N GLU X 132 B 1 2 N ILE A 14 ? N ILE X 14 O THR A 121 ? O THR X 121 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software X N22 219 ? 13 'BINDING SITE FOR RESIDUE N22 X 219' AC2 Software X NDP 207 ? 25 'BINDING SITE FOR RESIDUE NDP X 207' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 LEU A 5 ? LEU X 5 . ? 1_555 ? 2 AC1 13 VAL A 6 ? VAL X 6 . ? 1_555 ? 3 AC1 13 ALA A 7 ? ALA X 7 . ? 1_555 ? 4 AC1 13 ASN A 18 ? ASN X 18 . ? 1_555 ? 5 AC1 13 ASP A 27 ? ASP X 27 . ? 1_555 ? 6 AC1 13 LEU A 28 ? LEU X 28 . ? 1_555 ? 7 AC1 13 VAL A 31 ? VAL X 31 . ? 1_555 ? 8 AC1 13 SER A 49 ? SER X 49 . ? 1_555 ? 9 AC1 13 ILE A 50 ? ILE X 50 . ? 1_555 ? 10 AC1 13 PHE A 92 ? PHE X 92 . ? 1_555 ? 11 AC1 13 TYR A 98 ? TYR X 98 . ? 1_555 ? 12 AC1 13 THR A 111 ? THR X 111 . ? 1_555 ? 13 AC1 13 NDP C . ? NDP X 207 . ? 1_555 ? 14 AC2 25 VAL A 6 ? VAL X 6 . ? 1_555 ? 15 AC2 25 ALA A 7 ? ALA X 7 . ? 1_555 ? 16 AC2 25 ILE A 14 ? ILE X 14 . ? 1_555 ? 17 AC2 25 GLY A 15 ? GLY X 15 . ? 1_555 ? 18 AC2 25 ASN A 18 ? ASN X 18 . ? 1_555 ? 19 AC2 25 GLN A 19 ? GLN X 19 . ? 1_555 ? 20 AC2 25 GLY A 43 ? GLY X 43 . ? 1_555 ? 21 AC2 25 ARG A 44 ? ARG X 44 . ? 1_555 ? 22 AC2 25 LYS A 45 ? LYS X 45 . ? 1_555 ? 23 AC2 25 THR A 46 ? THR X 46 . ? 1_555 ? 24 AC2 25 LEU A 62 ? LEU X 62 . ? 1_555 ? 25 AC2 25 THR A 63 ? THR X 63 . ? 1_555 ? 26 AC2 25 SER A 64 ? SER X 64 . ? 1_555 ? 27 AC2 25 PHE A 92 ? PHE X 92 . ? 1_555 ? 28 AC2 25 GLY A 93 ? GLY X 93 . ? 1_555 ? 29 AC2 25 GLY A 94 ? GLY X 94 . ? 1_555 ? 30 AC2 25 GLN A 95 ? GLN X 95 . ? 1_555 ? 31 AC2 25 THR A 96 ? THR X 96 . ? 1_555 ? 32 AC2 25 TYR A 98 ? TYR X 98 . ? 1_555 ? 33 AC2 25 GLU A 100 ? GLU X 100 . ? 1_555 ? 34 AC2 25 THR A 121 ? THR X 121 . ? 1_555 ? 35 AC2 25 HOH D . ? HOH X 165 . ? 1_555 ? 36 AC2 25 HOH D . ? HOH X 180 . ? 1_555 ? 37 AC2 25 HOH D . ? HOH X 182 . ? 1_555 ? 38 AC2 25 N22 B . ? N22 X 219 . ? 1_555 ? # _atom_sites.entry_id 3I8A _atom_sites.fract_transf_matrix[1][1] 0.012632 _atom_sites.fract_transf_matrix[1][2] 0.007293 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014586 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009178 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR X . n A 1 2 LEU 2 2 2 LEU LEU X . n A 1 3 SER 3 3 3 SER SER X . n A 1 4 ILE 4 4 4 ILE ILE X . n A 1 5 LEU 5 5 5 LEU LEU X . n A 1 6 VAL 6 6 6 VAL VAL X . n A 1 7 ALA 7 7 7 ALA ALA X . n A 1 8 HIS 8 8 8 HIS HIS X . n A 1 9 ASP 9 9 9 ASP ASP X . n A 1 10 LEU 10 10 10 LEU LEU X . n A 1 11 GLN 11 11 11 GLN GLN X . n A 1 12 ARG 12 12 12 ARG ARG X . n A 1 13 VAL 13 13 13 VAL VAL X . n A 1 14 ILE 14 14 14 ILE ILE X . n A 1 15 GLY 15 15 15 GLY GLY X . n A 1 16 PHE 16 16 16 PHE PHE X . n A 1 17 GLU 17 17 17 GLU GLU X . n A 1 18 ASN 18 18 18 ASN ASN X . n A 1 19 GLN 19 19 19 GLN GLN X . n A 1 20 LEU 20 20 20 LEU LEU X . n A 1 21 PRO 21 21 21 PRO PRO X . n A 1 22 TRP 22 22 22 TRP TRP X . n A 1 23 HIS 23 23 23 HIS HIS X . n A 1 24 LEU 24 24 24 LEU LEU X . n A 1 25 PRO 25 25 25 PRO PRO X . n A 1 26 ASN 26 26 26 ASN ASN X . n A 1 27 ASP 27 27 27 ASP ASP X . n A 1 28 LEU 28 28 28 LEU LEU X . n A 1 29 LYS 29 29 29 LYS LYS X . n A 1 30 ASN 30 30 30 ASN ASN X . n A 1 31 VAL 31 31 31 VAL VAL X . n A 1 32 LYS 32 32 32 LYS LYS X . n A 1 33 LYS 33 33 33 LYS LYS X . n A 1 34 LEU 34 34 34 LEU LEU X . n A 1 35 SER 35 35 35 SER SER X . n A 1 36 THR 36 36 36 THR THR X . n A 1 37 GLY 37 37 37 GLY GLY X . n A 1 38 HIS 38 38 38 HIS HIS X . n A 1 39 THR 39 39 39 THR THR X . n A 1 40 LEU 40 40 40 LEU LEU X . n A 1 41 VAL 41 41 41 VAL VAL X . n A 1 42 MET 42 42 42 MET MET X . n A 1 43 GLY 43 43 43 GLY GLY X . n A 1 44 ARG 44 44 44 ARG ARG X . n A 1 45 LYS 45 45 45 LYS LYS X . n A 1 46 THR 46 46 46 THR THR X . n A 1 47 PHE 47 47 47 PHE PHE X . n A 1 48 GLU 48 48 48 GLU GLU X . n A 1 49 SER 49 49 49 SER SER X . n A 1 50 ILE 50 50 50 ILE ILE X . n A 1 51 GLY 51 51 51 GLY GLY X . n A 1 52 LYS 52 52 52 LYS LYS X . n A 1 53 PRO 53 53 53 PRO PRO X . n A 1 54 LEU 54 54 54 LEU LEU X . n A 1 55 PRO 55 55 55 PRO PRO X . n A 1 56 ASN 56 56 56 ASN ASN X . n A 1 57 ARG 57 57 57 ARG ARG X . n A 1 58 ARG 58 58 58 ARG ARG X . n A 1 59 ASN 59 59 59 ASN ASN X . n A 1 60 VAL 60 60 60 VAL VAL X . n A 1 61 VAL 61 61 61 VAL VAL X . n A 1 62 LEU 62 62 62 LEU LEU X . n A 1 63 THR 63 63 63 THR THR X . n A 1 64 SER 64 64 64 SER SER X . n A 1 65 ASP 65 65 65 ASP ASP X . n A 1 66 THR 66 66 66 THR THR X . n A 1 67 SER 67 67 67 SER SER X . n A 1 68 PHE 68 68 68 PHE PHE X . n A 1 69 ASN 69 69 69 ASN ASN X . n A 1 70 VAL 70 70 70 VAL VAL X . n A 1 71 GLU 71 71 71 GLU GLU X . n A 1 72 GLY 72 72 72 GLY GLY X . n A 1 73 VAL 73 73 73 VAL VAL X . n A 1 74 ASP 74 74 74 ASP ASP X . n A 1 75 VAL 75 75 75 VAL VAL X . n A 1 76 ILE 76 76 76 ILE ILE X . n A 1 77 HIS 77 77 77 HIS HIS X . n A 1 78 SER 78 78 78 SER SER X . n A 1 79 ILE 79 79 79 ILE ILE X . n A 1 80 GLU 80 80 80 GLU GLU X . n A 1 81 ASP 81 81 81 ASP ASP X . n A 1 82 ILE 82 82 82 ILE ILE X . n A 1 83 TYR 83 83 83 TYR TYR X . n A 1 84 GLN 84 84 84 GLN GLN X . n A 1 85 LEU 85 85 85 LEU LEU X . n A 1 86 PRO 86 86 86 PRO PRO X . n A 1 87 GLY 87 87 87 GLY GLY X . n A 1 88 HIS 88 88 88 HIS HIS X . n A 1 89 VAL 89 89 89 VAL VAL X . n A 1 90 PHE 90 90 90 PHE PHE X . n A 1 91 ILE 91 91 91 ILE ILE X . n A 1 92 PHE 92 92 92 PHE PHE X . n A 1 93 GLY 93 93 93 GLY GLY X . n A 1 94 GLY 94 94 94 GLY GLY X . n A 1 95 GLN 95 95 95 GLN GLN X . n A 1 96 THR 96 96 96 THR THR X . n A 1 97 LEU 97 97 97 LEU LEU X . n A 1 98 TYR 98 98 98 TYR TYR X . n A 1 99 GLU 99 99 99 GLU GLU X . n A 1 100 GLU 100 100 100 GLU GLU X . n A 1 101 MET 101 101 101 MET MET X . n A 1 102 ILE 102 102 102 ILE ILE X . n A 1 103 ASP 103 103 103 ASP ASP X . n A 1 104 LYS 104 104 104 LYS LYS X . n A 1 105 VAL 105 105 105 VAL VAL X . n A 1 106 ASP 106 106 106 ASP ASP X . n A 1 107 ASP 107 107 107 ASP ASP X . n A 1 108 MET 108 108 108 MET MET X . n A 1 109 TYR 109 109 109 TYR TYR X . n A 1 110 ILE 110 110 110 ILE ILE X . n A 1 111 THR 111 111 111 THR THR X . n A 1 112 VAL 112 112 112 VAL VAL X . n A 1 113 ILE 113 113 113 ILE ILE X . n A 1 114 GLU 114 114 114 GLU GLU X . n A 1 115 GLY 115 115 115 GLY GLY X . n A 1 116 LYS 116 116 116 LYS LYS X . n A 1 117 PHE 117 117 117 PHE PHE X . n A 1 118 ARG 118 118 118 ARG ARG X . n A 1 119 GLY 119 119 119 GLY GLY X . n A 1 120 ASP 120 120 120 ASP ASP X . n A 1 121 THR 121 121 121 THR THR X . n A 1 122 PHE 122 122 122 PHE PHE X . n A 1 123 PHE 123 123 123 PHE PHE X . n A 1 124 PRO 124 124 124 PRO PRO X . n A 1 125 PRO 125 125 125 PRO PRO X . n A 1 126 TYR 126 126 126 TYR TYR X . n A 1 127 THR 127 127 127 THR THR X . n A 1 128 PHE 128 128 128 PHE PHE X . n A 1 129 GLU 129 129 129 GLU GLU X . n A 1 130 ASP 130 130 130 ASP ASP X . n A 1 131 TRP 131 131 131 TRP TRP X . n A 1 132 GLU 132 132 132 GLU GLU X . n A 1 133 VAL 133 133 133 VAL VAL X . n A 1 134 ALA 134 134 134 ALA ALA X . n A 1 135 SER 135 135 135 SER SER X . n A 1 136 SER 136 136 136 SER SER X . n A 1 137 VAL 137 137 137 VAL VAL X . n A 1 138 GLU 138 138 138 GLU GLU X . n A 1 139 GLY 139 139 139 GLY GLY X . n A 1 140 LYS 140 140 140 LYS LYS X . n A 1 141 LEU 141 141 141 LEU LEU X . n A 1 142 ASP 142 142 142 ASP ASP X . n A 1 143 GLU 143 143 143 GLU GLU X . n A 1 144 LYS 144 144 144 LYS LYS X . n A 1 145 ASN 145 145 145 ASN ASN X . n A 1 146 THR 146 146 146 THR THR X . n A 1 147 ILE 147 147 147 ILE ILE X . n A 1 148 PRO 148 148 148 PRO PRO X . n A 1 149 HIS 149 149 149 HIS HIS X . n A 1 150 THR 150 150 150 THR THR X . n A 1 151 PHE 151 151 151 PHE PHE X . n A 1 152 LEU 152 152 152 LEU LEU X . n A 1 153 HIS 153 153 153 HIS HIS X . n A 1 154 LEU 154 154 154 LEU LEU X . n A 1 155 ILE 155 155 155 ILE ILE X . n A 1 156 ARG 156 156 156 ARG ARG X . n A 1 157 LYS 157 157 157 LYS LYS X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 N22 1 219 219 N22 N22 X . C 3 NDP 1 207 207 NDP NAP X . D 4 HOH 1 158 1 HOH HOH X . D 4 HOH 2 159 2 HOH HOH X . D 4 HOH 3 160 3 HOH HOH X . D 4 HOH 4 161 4 HOH HOH X . D 4 HOH 5 162 5 HOH HOH X . D 4 HOH 6 163 7 HOH HOH X . D 4 HOH 7 164 8 HOH HOH X . D 4 HOH 8 165 9 HOH HOH X . D 4 HOH 9 166 10 HOH HOH X . D 4 HOH 10 167 11 HOH HOH X . D 4 HOH 11 168 12 HOH HOH X . D 4 HOH 12 169 13 HOH HOH X . D 4 HOH 13 170 14 HOH HOH X . D 4 HOH 14 171 15 HOH HOH X . D 4 HOH 15 172 16 HOH HOH X . D 4 HOH 16 173 17 HOH HOH X . D 4 HOH 17 174 18 HOH HOH X . D 4 HOH 18 175 19 HOH HOH X . D 4 HOH 19 176 20 HOH HOH X . D 4 HOH 20 177 21 HOH HOH X . D 4 HOH 21 178 22 HOH HOH X . D 4 HOH 22 179 23 HOH HOH X . D 4 HOH 23 180 24 HOH HOH X . D 4 HOH 24 181 25 HOH HOH X . D 4 HOH 25 182 26 HOH HOH X . D 4 HOH 26 183 27 HOH HOH X . D 4 HOH 27 184 29 HOH HOH X . D 4 HOH 28 185 30 HOH HOH X . D 4 HOH 29 186 31 HOH HOH X . D 4 HOH 30 187 32 HOH HOH X . D 4 HOH 31 188 33 HOH HOH X . D 4 HOH 32 189 34 HOH HOH X . D 4 HOH 33 190 35 HOH HOH X . D 4 HOH 34 191 36 HOH HOH X . D 4 HOH 35 192 37 HOH HOH X . D 4 HOH 36 193 38 HOH HOH X . D 4 HOH 37 194 39 HOH HOH X . D 4 HOH 38 195 40 HOH HOH X . D 4 HOH 39 196 42 HOH HOH X . D 4 HOH 40 197 43 HOH HOH X . D 4 HOH 41 198 44 HOH HOH X . D 4 HOH 42 199 46 HOH HOH X . D 4 HOH 43 200 47 HOH HOH X . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id X _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 181 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-02-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2013-11-20 4 'Structure model' 1 3 2021-10-13 5 'Structure model' 1 4 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_special_symmetry 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 CBASS . ? ? ? ? 'data collection' ? ? ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 6 Coot . ? ? ? ? 'model building' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS X 38 ? ? -126.27 -160.77 2 1 ASN X 69 ? ? -156.05 77.04 3 1 PHE X 128 ? ? -66.88 1.91 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ASP _pdbx_validate_peptide_omega.auth_asym_id_1 X _pdbx_validate_peptide_omega.auth_seq_id_1 106 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ASP _pdbx_validate_peptide_omega.auth_asym_id_2 X _pdbx_validate_peptide_omega.auth_seq_id_2 107 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -140.51 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 N22 C8 C N N 236 N22 C7 C N N 237 N22 C5 C Y N 238 N22 N4 N Y N 239 N22 C3 C Y N 240 N22 N8 N N N 241 N22 N2 N Y N 242 N22 C1 C Y N 243 N22 N7 N N N 244 N22 C6 C Y N 245 N22 C9 C N N 246 N22 C10 C N N 247 N22 C11 C N N 248 N22 C13 C Y N 249 N22 C18 C Y N 250 N22 C17 C Y N 251 N22 O2 O N N 252 N22 C4 C N N 253 N22 C16 C Y N 254 N22 C15 C Y N 255 N22 C14 C Y N 256 N22 O10 O N N 257 N22 C2 C N N 258 N22 H8 H N N 259 N22 H8A H N N 260 N22 H8B H N N 261 N22 H7 H N N 262 N22 H7A H N N 263 N22 HN8 H N N 264 N22 HN8A H N N 265 N22 HN7 H N N 266 N22 HN7A H N N 267 N22 H11 H N N 268 N22 H11A H N N 269 N22 H18 H N N 270 N22 H4 H N N 271 N22 H4A H N N 272 N22 H4B H N N 273 N22 H16 H N N 274 N22 H15 H N N 275 N22 H2 H N N 276 N22 H2A H N N 277 N22 H2B H N N 278 NDP PA P N S 279 NDP O1A O N N 280 NDP O2A O N N 281 NDP O5B O N N 282 NDP C5B C N N 283 NDP C4B C N R 284 NDP O4B O N N 285 NDP C3B C N R 286 NDP O3B O N N 287 NDP C2B C N R 288 NDP O2B O N N 289 NDP C1B C N R 290 NDP N9A N Y N 291 NDP C8A C Y N 292 NDP N7A N Y N 293 NDP C5A C Y N 294 NDP C6A C Y N 295 NDP N6A N N N 296 NDP N1A N Y N 297 NDP C2A C Y N 298 NDP N3A N Y N 299 NDP C4A C Y N 300 NDP O3 O N N 301 NDP PN P N S 302 NDP O1N O N N 303 NDP O2N O N N 304 NDP O5D O N N 305 NDP C5D C N N 306 NDP C4D C N R 307 NDP O4D O N N 308 NDP C3D C N S 309 NDP O3D O N N 310 NDP C2D C N R 311 NDP O2D O N N 312 NDP C1D C N R 313 NDP N1N N N N 314 NDP C2N C N N 315 NDP C3N C N N 316 NDP C7N C N N 317 NDP O7N O N N 318 NDP N7N N N N 319 NDP C4N C N N 320 NDP C5N C N N 321 NDP C6N C N N 322 NDP P2B P N N 323 NDP O1X O N N 324 NDP O2X O N N 325 NDP O3X O N N 326 NDP HOA2 H N N 327 NDP H51A H N N 328 NDP H52A H N N 329 NDP H4B H N N 330 NDP H3B H N N 331 NDP HO3A H N N 332 NDP H2B H N N 333 NDP H1B H N N 334 NDP H8A H N N 335 NDP H61A H N N 336 NDP H62A H N N 337 NDP H2A H N N 338 NDP H21N H N N 339 NDP H51N H N N 340 NDP H52N H N N 341 NDP H4D H N N 342 NDP H3D H N N 343 NDP HO3N H N N 344 NDP H2D H N N 345 NDP HO2N H N N 346 NDP H1D H N N 347 NDP H2N H N N 348 NDP H71N H N N 349 NDP H72N H N N 350 NDP H41N H N N 351 NDP H42N H N N 352 NDP H5N H N N 353 NDP H6N H N N 354 NDP HOP2 H N N 355 NDP HOP3 H N N 356 PHE N N N N 357 PHE CA C N S 358 PHE C C N N 359 PHE O O N N 360 PHE CB C N N 361 PHE CG C Y N 362 PHE CD1 C Y N 363 PHE CD2 C Y N 364 PHE CE1 C Y N 365 PHE CE2 C Y N 366 PHE CZ C Y N 367 PHE OXT O N N 368 PHE H H N N 369 PHE H2 H N N 370 PHE HA H N N 371 PHE HB2 H N N 372 PHE HB3 H N N 373 PHE HD1 H N N 374 PHE HD2 H N N 375 PHE HE1 H N N 376 PHE HE2 H N N 377 PHE HZ H N N 378 PHE HXT H N N 379 PRO N N N N 380 PRO CA C N S 381 PRO C C N N 382 PRO O O N N 383 PRO CB C N N 384 PRO CG C N N 385 PRO CD C N N 386 PRO OXT O N N 387 PRO H H N N 388 PRO HA H N N 389 PRO HB2 H N N 390 PRO HB3 H N N 391 PRO HG2 H N N 392 PRO HG3 H N N 393 PRO HD2 H N N 394 PRO HD3 H N N 395 PRO HXT H N N 396 SER N N N N 397 SER CA C N S 398 SER C C N N 399 SER O O N N 400 SER CB C N N 401 SER OG O N N 402 SER OXT O N N 403 SER H H N N 404 SER H2 H N N 405 SER HA H N N 406 SER HB2 H N N 407 SER HB3 H N N 408 SER HG H N N 409 SER HXT H N N 410 THR N N N N 411 THR CA C N S 412 THR C C N N 413 THR O O N N 414 THR CB C N R 415 THR OG1 O N N 416 THR CG2 C N N 417 THR OXT O N N 418 THR H H N N 419 THR H2 H N N 420 THR HA H N N 421 THR HB H N N 422 THR HG1 H N N 423 THR HG21 H N N 424 THR HG22 H N N 425 THR HG23 H N N 426 THR HXT H N N 427 TRP N N N N 428 TRP CA C N S 429 TRP C C N N 430 TRP O O N N 431 TRP CB C N N 432 TRP CG C Y N 433 TRP CD1 C Y N 434 TRP CD2 C Y N 435 TRP NE1 N Y N 436 TRP CE2 C Y N 437 TRP CE3 C Y N 438 TRP CZ2 C Y N 439 TRP CZ3 C Y N 440 TRP CH2 C Y N 441 TRP OXT O N N 442 TRP H H N N 443 TRP H2 H N N 444 TRP HA H N N 445 TRP HB2 H N N 446 TRP HB3 H N N 447 TRP HD1 H N N 448 TRP HE1 H N N 449 TRP HE3 H N N 450 TRP HZ2 H N N 451 TRP HZ3 H N N 452 TRP HH2 H N N 453 TRP HXT H N N 454 TYR N N N N 455 TYR CA C N S 456 TYR C C N N 457 TYR O O N N 458 TYR CB C N N 459 TYR CG C Y N 460 TYR CD1 C Y N 461 TYR CD2 C Y N 462 TYR CE1 C Y N 463 TYR CE2 C Y N 464 TYR CZ C Y N 465 TYR OH O N N 466 TYR OXT O N N 467 TYR H H N N 468 TYR H2 H N N 469 TYR HA H N N 470 TYR HB2 H N N 471 TYR HB3 H N N 472 TYR HD1 H N N 473 TYR HD2 H N N 474 TYR HE1 H N N 475 TYR HE2 H N N 476 TYR HH H N N 477 TYR HXT H N N 478 VAL N N N N 479 VAL CA C N S 480 VAL C C N N 481 VAL O O N N 482 VAL CB C N N 483 VAL CG1 C N N 484 VAL CG2 C N N 485 VAL OXT O N N 486 VAL H H N N 487 VAL H2 H N N 488 VAL HA H N N 489 VAL HB H N N 490 VAL HG11 H N N 491 VAL HG12 H N N 492 VAL HG13 H N N 493 VAL HG21 H N N 494 VAL HG22 H N N 495 VAL HG23 H N N 496 VAL HXT H N N 497 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 N22 C8 C7 sing N N 224 N22 C7 C5 sing N N 225 N22 C5 N4 doub Y N 226 N22 C5 C6 sing Y N 227 N22 N4 C3 sing Y N 228 N22 C3 N8 sing N N 229 N22 C3 N2 doub Y N 230 N22 N2 C1 sing Y N 231 N22 C1 N7 sing N N 232 N22 C1 C6 doub Y N 233 N22 C6 C9 sing N N 234 N22 C9 C10 trip N N 235 N22 C10 C11 sing N N 236 N22 C11 C13 sing N N 237 N22 C13 C18 doub Y N 238 N22 C13 C14 sing Y N 239 N22 C18 C17 sing Y N 240 N22 C17 O2 sing N N 241 N22 C17 C16 doub Y N 242 N22 O2 C4 sing N N 243 N22 C16 C15 sing Y N 244 N22 C15 C14 doub Y N 245 N22 C14 O10 sing N N 246 N22 O10 C2 sing N N 247 N22 C8 H8 sing N N 248 N22 C8 H8A sing N N 249 N22 C8 H8B sing N N 250 N22 C7 H7 sing N N 251 N22 C7 H7A sing N N 252 N22 N8 HN8 sing N N 253 N22 N8 HN8A sing N N 254 N22 N7 HN7 sing N N 255 N22 N7 HN7A sing N N 256 N22 C11 H11 sing N N 257 N22 C11 H11A sing N N 258 N22 C18 H18 sing N N 259 N22 C4 H4 sing N N 260 N22 C4 H4A sing N N 261 N22 C4 H4B sing N N 262 N22 C16 H16 sing N N 263 N22 C15 H15 sing N N 264 N22 C2 H2 sing N N 265 N22 C2 H2A sing N N 266 N22 C2 H2B sing N N 267 NDP PA O1A doub N N 268 NDP PA O2A sing N N 269 NDP PA O5B sing N N 270 NDP PA O3 sing N N 271 NDP O2A HOA2 sing N N 272 NDP O5B C5B sing N N 273 NDP C5B C4B sing N N 274 NDP C5B H51A sing N N 275 NDP C5B H52A sing N N 276 NDP C4B O4B sing N N 277 NDP C4B C3B sing N N 278 NDP C4B H4B sing N N 279 NDP O4B C1B sing N N 280 NDP C3B O3B sing N N 281 NDP C3B C2B sing N N 282 NDP C3B H3B sing N N 283 NDP O3B HO3A sing N N 284 NDP C2B O2B sing N N 285 NDP C2B C1B sing N N 286 NDP C2B H2B sing N N 287 NDP O2B P2B sing N N 288 NDP C1B N9A sing N N 289 NDP C1B H1B sing N N 290 NDP N9A C8A sing Y N 291 NDP N9A C4A sing Y N 292 NDP C8A N7A doub Y N 293 NDP C8A H8A sing N N 294 NDP N7A C5A sing Y N 295 NDP C5A C6A sing Y N 296 NDP C5A C4A doub Y N 297 NDP C6A N6A sing N N 298 NDP C6A N1A doub Y N 299 NDP N6A H61A sing N N 300 NDP N6A H62A sing N N 301 NDP N1A C2A sing Y N 302 NDP C2A N3A doub Y N 303 NDP C2A H2A sing N N 304 NDP N3A C4A sing Y N 305 NDP O3 PN sing N N 306 NDP PN O1N doub N N 307 NDP PN O2N sing N N 308 NDP PN O5D sing N N 309 NDP O2N H21N sing N N 310 NDP O5D C5D sing N N 311 NDP C5D C4D sing N N 312 NDP C5D H51N sing N N 313 NDP C5D H52N sing N N 314 NDP C4D O4D sing N N 315 NDP C4D C3D sing N N 316 NDP C4D H4D sing N N 317 NDP O4D C1D sing N N 318 NDP C3D O3D sing N N 319 NDP C3D C2D sing N N 320 NDP C3D H3D sing N N 321 NDP O3D HO3N sing N N 322 NDP C2D O2D sing N N 323 NDP C2D C1D sing N N 324 NDP C2D H2D sing N N 325 NDP O2D HO2N sing N N 326 NDP C1D N1N sing N N 327 NDP C1D H1D sing N N 328 NDP N1N C2N sing N N 329 NDP N1N C6N sing N N 330 NDP C2N C3N doub N N 331 NDP C2N H2N sing N N 332 NDP C3N C7N sing N N 333 NDP C3N C4N sing N N 334 NDP C7N O7N doub N N 335 NDP C7N N7N sing N N 336 NDP N7N H71N sing N N 337 NDP N7N H72N sing N N 338 NDP C4N C5N sing N N 339 NDP C4N H41N sing N N 340 NDP C4N H42N sing N N 341 NDP C5N C6N doub N N 342 NDP C5N H5N sing N N 343 NDP C6N H6N sing N N 344 NDP P2B O1X doub N N 345 NDP P2B O2X sing N N 346 NDP P2B O3X sing N N 347 NDP O2X HOP2 sing N N 348 NDP O3X HOP3 sing N N 349 PHE N CA sing N N 350 PHE N H sing N N 351 PHE N H2 sing N N 352 PHE CA C sing N N 353 PHE CA CB sing N N 354 PHE CA HA sing N N 355 PHE C O doub N N 356 PHE C OXT sing N N 357 PHE CB CG sing N N 358 PHE CB HB2 sing N N 359 PHE CB HB3 sing N N 360 PHE CG CD1 doub Y N 361 PHE CG CD2 sing Y N 362 PHE CD1 CE1 sing Y N 363 PHE CD1 HD1 sing N N 364 PHE CD2 CE2 doub Y N 365 PHE CD2 HD2 sing N N 366 PHE CE1 CZ doub Y N 367 PHE CE1 HE1 sing N N 368 PHE CE2 CZ sing Y N 369 PHE CE2 HE2 sing N N 370 PHE CZ HZ sing N N 371 PHE OXT HXT sing N N 372 PRO N CA sing N N 373 PRO N CD sing N N 374 PRO N H sing N N 375 PRO CA C sing N N 376 PRO CA CB sing N N 377 PRO CA HA sing N N 378 PRO C O doub N N 379 PRO C OXT sing N N 380 PRO CB CG sing N N 381 PRO CB HB2 sing N N 382 PRO CB HB3 sing N N 383 PRO CG CD sing N N 384 PRO CG HG2 sing N N 385 PRO CG HG3 sing N N 386 PRO CD HD2 sing N N 387 PRO CD HD3 sing N N 388 PRO OXT HXT sing N N 389 SER N CA sing N N 390 SER N H sing N N 391 SER N H2 sing N N 392 SER CA C sing N N 393 SER CA CB sing N N 394 SER CA HA sing N N 395 SER C O doub N N 396 SER C OXT sing N N 397 SER CB OG sing N N 398 SER CB HB2 sing N N 399 SER CB HB3 sing N N 400 SER OG HG sing N N 401 SER OXT HXT sing N N 402 THR N CA sing N N 403 THR N H sing N N 404 THR N H2 sing N N 405 THR CA C sing N N 406 THR CA CB sing N N 407 THR CA HA sing N N 408 THR C O doub N N 409 THR C OXT sing N N 410 THR CB OG1 sing N N 411 THR CB CG2 sing N N 412 THR CB HB sing N N 413 THR OG1 HG1 sing N N 414 THR CG2 HG21 sing N N 415 THR CG2 HG22 sing N N 416 THR CG2 HG23 sing N N 417 THR OXT HXT sing N N 418 TRP N CA sing N N 419 TRP N H sing N N 420 TRP N H2 sing N N 421 TRP CA C sing N N 422 TRP CA CB sing N N 423 TRP CA HA sing N N 424 TRP C O doub N N 425 TRP C OXT sing N N 426 TRP CB CG sing N N 427 TRP CB HB2 sing N N 428 TRP CB HB3 sing N N 429 TRP CG CD1 doub Y N 430 TRP CG CD2 sing Y N 431 TRP CD1 NE1 sing Y N 432 TRP CD1 HD1 sing N N 433 TRP CD2 CE2 doub Y N 434 TRP CD2 CE3 sing Y N 435 TRP NE1 CE2 sing Y N 436 TRP NE1 HE1 sing N N 437 TRP CE2 CZ2 sing Y N 438 TRP CE3 CZ3 doub Y N 439 TRP CE3 HE3 sing N N 440 TRP CZ2 CH2 doub Y N 441 TRP CZ2 HZ2 sing N N 442 TRP CZ3 CH2 sing Y N 443 TRP CZ3 HZ3 sing N N 444 TRP CH2 HH2 sing N N 445 TRP OXT HXT sing N N 446 TYR N CA sing N N 447 TYR N H sing N N 448 TYR N H2 sing N N 449 TYR CA C sing N N 450 TYR CA CB sing N N 451 TYR CA HA sing N N 452 TYR C O doub N N 453 TYR C OXT sing N N 454 TYR CB CG sing N N 455 TYR CB HB2 sing N N 456 TYR CB HB3 sing N N 457 TYR CG CD1 doub Y N 458 TYR CG CD2 sing Y N 459 TYR CD1 CE1 sing Y N 460 TYR CD1 HD1 sing N N 461 TYR CD2 CE2 doub Y N 462 TYR CD2 HD2 sing N N 463 TYR CE1 CZ doub Y N 464 TYR CE1 HE1 sing N N 465 TYR CE2 CZ sing Y N 466 TYR CE2 HE2 sing N N 467 TYR CZ OH sing N N 468 TYR OH HH sing N N 469 TYR OXT HXT sing N N 470 VAL N CA sing N N 471 VAL N H sing N N 472 VAL N H2 sing N N 473 VAL CA C sing N N 474 VAL CA CB sing N N 475 VAL CA HA sing N N 476 VAL C O doub N N 477 VAL C OXT sing N N 478 VAL CB CG1 sing N N 479 VAL CB CG2 sing N N 480 VAL CB HB sing N N 481 VAL CG1 HG11 sing N N 482 VAL CG1 HG12 sing N N 483 VAL CG1 HG13 sing N N 484 VAL CG2 HG21 sing N N 485 VAL CG2 HG22 sing N N 486 VAL CG2 HG23 sing N N 487 VAL OXT HXT sing N N 488 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '5-[3-(2,5-dimethoxyphenyl)prop-1-yn-1-yl]-6-ethylpyrimidine-2,4-diamine' N22 3 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' NDP 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3FQO _pdbx_initial_refinement_model.details ? #