data_3I8O # _entry.id 3I8O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.313 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3I8O RCSB RCSB054103 WWPDB D_1000054103 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC89320.5 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3I8O _pdbx_database_status.recvd_initial_deposition_date 2009-07-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tan, K.' 1 'Chhor, G.' 2 'Cobb, G.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'A domain of a functionally unknown protein from Methanocaldococcus jannaschii DSM 2661.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tan, K.' 1 ? primary 'Chhor, G.' 2 ? primary 'Cobb, G.' 3 ? primary 'Joachimiak, A.' 4 ? # _cell.entry_id 3I8O _cell.length_a 87.988 _cell.length_b 87.988 _cell.length_c 96.450 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3I8O _symmetry.space_group_name_H-M 'I 4 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'KH domain-containing protein MJ1533' 16178.149 1 ? ? 'residues 27-165' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 4 non-polymer syn 'FORMIC ACID' 46.025 3 ? ? ? ? 5 non-polymer syn 'ACETATE ION' 59.044 2 ? ? ? ? 6 water nat water 18.015 5 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNAKKVCVDTCVVIDGRITELIERGKLKDATIIIPEAVVSELEYQAN(MSE)GREIGYKGIEELRKLIEKASEHNIKVEY YGERPTREEIFLAKSGEIDA(MSE)IRKVAKETNSILLTSDWIQYNLAKAQGIEAYFLEAAEEEVELVLD ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAKKVCVDTCVVIDGRITELIERGKLKDATIIIPEAVVSELEYQANMGREIGYKGIEELRKLIEKASEHNIKVEYYGER PTREEIFLAKSGEIDAMIRKVAKETNSILLTSDWIQYNLAKAQGIEAYFLEAAEEEVELVLD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC89320.5 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 LYS n 1 5 LYS n 1 6 VAL n 1 7 CYS n 1 8 VAL n 1 9 ASP n 1 10 THR n 1 11 CYS n 1 12 VAL n 1 13 VAL n 1 14 ILE n 1 15 ASP n 1 16 GLY n 1 17 ARG n 1 18 ILE n 1 19 THR n 1 20 GLU n 1 21 LEU n 1 22 ILE n 1 23 GLU n 1 24 ARG n 1 25 GLY n 1 26 LYS n 1 27 LEU n 1 28 LYS n 1 29 ASP n 1 30 ALA n 1 31 THR n 1 32 ILE n 1 33 ILE n 1 34 ILE n 1 35 PRO n 1 36 GLU n 1 37 ALA n 1 38 VAL n 1 39 VAL n 1 40 SER n 1 41 GLU n 1 42 LEU n 1 43 GLU n 1 44 TYR n 1 45 GLN n 1 46 ALA n 1 47 ASN n 1 48 MSE n 1 49 GLY n 1 50 ARG n 1 51 GLU n 1 52 ILE n 1 53 GLY n 1 54 TYR n 1 55 LYS n 1 56 GLY n 1 57 ILE n 1 58 GLU n 1 59 GLU n 1 60 LEU n 1 61 ARG n 1 62 LYS n 1 63 LEU n 1 64 ILE n 1 65 GLU n 1 66 LYS n 1 67 ALA n 1 68 SER n 1 69 GLU n 1 70 HIS n 1 71 ASN n 1 72 ILE n 1 73 LYS n 1 74 VAL n 1 75 GLU n 1 76 TYR n 1 77 TYR n 1 78 GLY n 1 79 GLU n 1 80 ARG n 1 81 PRO n 1 82 THR n 1 83 ARG n 1 84 GLU n 1 85 GLU n 1 86 ILE n 1 87 PHE n 1 88 LEU n 1 89 ALA n 1 90 LYS n 1 91 SER n 1 92 GLY n 1 93 GLU n 1 94 ILE n 1 95 ASP n 1 96 ALA n 1 97 MSE n 1 98 ILE n 1 99 ARG n 1 100 LYS n 1 101 VAL n 1 102 ALA n 1 103 LYS n 1 104 GLU n 1 105 THR n 1 106 ASN n 1 107 SER n 1 108 ILE n 1 109 LEU n 1 110 LEU n 1 111 THR n 1 112 SER n 1 113 ASP n 1 114 TRP n 1 115 ILE n 1 116 GLN n 1 117 TYR n 1 118 ASN n 1 119 LEU n 1 120 ALA n 1 121 LYS n 1 122 ALA n 1 123 GLN n 1 124 GLY n 1 125 ILE n 1 126 GLU n 1 127 ALA n 1 128 TYR n 1 129 PHE n 1 130 LEU n 1 131 GLU n 1 132 ALA n 1 133 ALA n 1 134 GLU n 1 135 GLU n 1 136 GLU n 1 137 VAL n 1 138 GLU n 1 139 LEU n 1 140 VAL n 1 141 LEU n 1 142 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Methanocaldococcus jannaschii' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'DSM 2661' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanocaldococcus jannaschii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2190 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain pPK1037 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Y1533_METJA _struct_ref.pdbx_db_accession Q58928 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KKVCVDTCVVIDGRITELIERGKLKDATIIIPEAVVSELEYQANMGREIGYKGIEELRKLIEKASEHNIKVEYYGERPTR EEIFLAKSGEIDAMIRKVAKETNSILLTSDWIQYNLAKAQGIEAYFLEAAEEEVELVLD ; _struct_ref.pdbx_align_begin 27 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3I8O _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 142 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q58928 _struct_ref_seq.db_align_beg 27 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 165 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 27 _struct_ref_seq.pdbx_auth_seq_align_end 165 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3I8O SER A 1 ? UNP Q58928 ? ? 'expression tag' 24 1 1 3I8O ASN A 2 ? UNP Q58928 ? ? 'expression tag' 25 2 1 3I8O ALA A 3 ? UNP Q58928 ? ? 'expression tag' 26 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMT non-polymer . 'FORMIC ACID' ? 'C H2 O2' 46.025 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3I8O _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.88 _exptl_crystal.density_percent_sol 57.36 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;0.14M CaCl2, 0.07M Sodium Acetate, 14%(v/v) Isopropanol and 30%(v/v)glycerol, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 277K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-04-09 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97940 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97940 # _reflns.entry_id 3I8O _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 38.12 _reflns.d_resolution_high 2.638 _reflns.number_obs 5822 _reflns.number_all 5822 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.098 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 22.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.65 _reflns_shell.d_res_low 2.71 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.893 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.36 _reflns_shell.pdbx_redundancy 7.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3I8O _refine.ls_number_reflns_obs 5822 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.89 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.116 _refine.ls_d_res_high 2.638 _refine.ls_percent_reflns_obs 99.22 _refine.ls_R_factor_obs 0.1951 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1921 _refine.ls_R_factor_R_free 0.2587 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.46 _refine.ls_number_reflns_R_free 473 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.938 _refine.correlation_coeff_Fo_to_Fc_free 0.926 _refine.B_iso_mean 25.182 _refine.aniso_B[1][1] -0.05 _refine.aniso_B[2][2] -0.05 _refine.aniso_B[3][3] 0.10 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.323 _refine.solvent_model_param_bsol 60.905 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.32 _refine.pdbx_overall_phase_error 26.55 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1106 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 21 _refine_hist.number_atoms_total 1136 _refine_hist.d_res_high 2.638 _refine_hist.d_res_low 38.116 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 1135 'X-RAY DIFFRACTION' ? f_angle_d 1.194 ? ? 1517 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 19.966 ? ? 430 'X-RAY DIFFRACTION' ? f_chiral_restr 0.080 ? ? 176 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 194 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.6379 3.0195 3361 0.2397 98.00 0.2686 . . 144 . . . . 'X-RAY DIFFRACTION' . 3.0195 3.8037 3358 0.1794 100.00 0.3159 . . 169 . . . . 'X-RAY DIFFRACTION' . 3.8037 38.1197 3414 0.1811 100.00 0.2241 . . 160 . . . . # _struct.entry_id 3I8O _struct.title 'A domain of a functionally unknown protein from Methanocaldococcus jannaschii DSM 2661.' _struct.pdbx_descriptor 'KH domain-containing protein MJ1533' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3I8O _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;APC89320.5, Methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, RNA-binding, RNA BINDING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 5 ? I N N 6 ? # _struct_biol.id 1 _struct_biol.details 'It is a monomer in solution.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 9 ? ASP A 15 ? ASP A 32 ASP A 38 1 ? 7 HELX_P HELX_P2 2 GLY A 16 ? ARG A 24 ? GLY A 39 ARG A 47 1 ? 9 HELX_P HELX_P3 3 GLU A 36 ? ASN A 47 ? GLU A 59 ASN A 70 1 ? 12 HELX_P HELX_P4 4 ARG A 50 ? HIS A 70 ? ARG A 73 HIS A 93 1 ? 21 HELX_P HELX_P5 5 THR A 82 ? LEU A 88 ? THR A 105 LEU A 111 1 ? 7 HELX_P HELX_P6 6 GLU A 93 ? THR A 105 ? GLU A 116 THR A 128 1 ? 13 HELX_P HELX_P7 7 ASP A 113 ? GLN A 123 ? ASP A 136 GLN A 146 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ASN 47 C ? ? ? 1_555 A MSE 48 N ? ? A ASN 70 A MSE 71 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale both ? A MSE 48 C ? ? ? 1_555 A GLY 49 N ? ? A MSE 71 A GLY 72 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale both ? A ALA 96 C ? ? ? 1_555 A MSE 97 N ? ? A ALA 119 A MSE 120 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale both ? A MSE 97 C ? ? ? 1_555 A ILE 98 N ? ? A MSE 120 A ILE 121 1_555 ? ? ? ? ? ? ? 1.322 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 74 ? TYR A 77 ? VAL A 97 TYR A 100 A 2 THR A 31 ? PRO A 35 ? THR A 54 PRO A 58 A 3 LYS A 5 ? VAL A 8 ? LYS A 28 VAL A 31 A 4 ILE A 108 ? THR A 111 ? ILE A 131 THR A 134 A 5 ALA A 127 ? PHE A 129 ? ALA A 150 PHE A 152 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 75 ? O GLU A 98 N ILE A 34 ? N ILE A 57 A 2 3 O ILE A 33 ? O ILE A 56 N VAL A 6 ? N VAL A 29 A 3 4 N LYS A 5 ? N LYS A 28 O ILE A 108 ? O ILE A 131 A 4 5 N LEU A 109 ? N LEU A 132 O TYR A 128 ? O TYR A 151 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CL A 1' AC2 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE PEG A 166' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE FMT A 167' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE FMT A 2' AC5 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE FMT A 3' AC6 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE ACT A 168' AC7 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ACT A 169' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 TRP A 114 ? TRP A 137 . ? 1_555 ? 2 AC1 4 TRP A 114 ? TRP A 137 . ? 4_565 ? 3 AC1 4 TRP A 114 ? TRP A 137 . ? 3_655 ? 4 AC1 4 TRP A 114 ? TRP A 137 . ? 2_665 ? 5 AC2 1 GLU A 131 ? GLU A 154 . ? 8_665 ? 6 AC3 3 ASN A 71 ? ASN A 94 . ? 1_555 ? 7 AC3 3 LYS A 73 ? LYS A 96 . ? 1_555 ? 8 AC3 3 GLU A 79 ? GLU A 102 . ? 16_555 ? 9 AC4 3 LYS A 5 ? LYS A 28 . ? 1_555 ? 10 AC4 3 ASN A 106 ? ASN A 129 . ? 1_555 ? 11 AC4 3 GLU A 126 ? GLU A 149 . ? 1_555 ? 12 AC5 2 VAL A 140 ? VAL A 163 . ? 1_555 ? 13 AC5 2 ASP A 142 ? ASP A 165 . ? 1_555 ? 14 AC6 2 ARG A 17 ? ARG A 40 . ? 1_555 ? 15 AC6 2 ASP A 142 ? ASP A 165 . ? 5_655 ? 16 AC7 4 ARG A 17 ? ARG A 40 . ? 1_555 ? 17 AC7 4 GLU A 131 ? GLU A 154 . ? 1_555 ? 18 AC7 4 GLU A 138 ? GLU A 161 . ? 8_665 ? 19 AC7 4 LEU A 139 ? LEU A 162 . ? 8_665 ? # _database_PDB_matrix.entry_id 3I8O _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3I8O _atom_sites.fract_transf_matrix[1][1] 0.011365 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011365 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010368 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 24 ? ? ? A . n A 1 2 ASN 2 25 ? ? ? A . n A 1 3 ALA 3 26 26 ALA ALA A . n A 1 4 LYS 4 27 27 LYS LYS A . n A 1 5 LYS 5 28 28 LYS LYS A . n A 1 6 VAL 6 29 29 VAL VAL A . n A 1 7 CYS 7 30 30 CYS CYS A . n A 1 8 VAL 8 31 31 VAL VAL A . n A 1 9 ASP 9 32 32 ASP ASP A . n A 1 10 THR 10 33 33 THR THR A . n A 1 11 CYS 11 34 34 CYS CYS A . n A 1 12 VAL 12 35 35 VAL VAL A . n A 1 13 VAL 13 36 36 VAL VAL A . n A 1 14 ILE 14 37 37 ILE ILE A . n A 1 15 ASP 15 38 38 ASP ASP A . n A 1 16 GLY 16 39 39 GLY GLY A . n A 1 17 ARG 17 40 40 ARG ARG A . n A 1 18 ILE 18 41 41 ILE ILE A . n A 1 19 THR 19 42 42 THR THR A . n A 1 20 GLU 20 43 43 GLU GLU A . n A 1 21 LEU 21 44 44 LEU LEU A . n A 1 22 ILE 22 45 45 ILE ILE A . n A 1 23 GLU 23 46 46 GLU GLU A . n A 1 24 ARG 24 47 47 ARG ARG A . n A 1 25 GLY 25 48 48 GLY GLY A . n A 1 26 LYS 26 49 49 LYS LYS A . n A 1 27 LEU 27 50 50 LEU LEU A . n A 1 28 LYS 28 51 51 LYS LYS A . n A 1 29 ASP 29 52 52 ASP ASP A . n A 1 30 ALA 30 53 53 ALA ALA A . n A 1 31 THR 31 54 54 THR THR A . n A 1 32 ILE 32 55 55 ILE ILE A . n A 1 33 ILE 33 56 56 ILE ILE A . n A 1 34 ILE 34 57 57 ILE ILE A . n A 1 35 PRO 35 58 58 PRO PRO A . n A 1 36 GLU 36 59 59 GLU GLU A . n A 1 37 ALA 37 60 60 ALA ALA A . n A 1 38 VAL 38 61 61 VAL VAL A . n A 1 39 VAL 39 62 62 VAL VAL A . n A 1 40 SER 40 63 63 SER SER A . n A 1 41 GLU 41 64 64 GLU GLU A . n A 1 42 LEU 42 65 65 LEU LEU A . n A 1 43 GLU 43 66 66 GLU GLU A . n A 1 44 TYR 44 67 67 TYR TYR A . n A 1 45 GLN 45 68 68 GLN GLN A . n A 1 46 ALA 46 69 69 ALA ALA A . n A 1 47 ASN 47 70 70 ASN ASN A . n A 1 48 MSE 48 71 71 MSE MSE A . n A 1 49 GLY 49 72 72 GLY GLY A . n A 1 50 ARG 50 73 73 ARG ARG A . n A 1 51 GLU 51 74 74 GLU GLU A . n A 1 52 ILE 52 75 75 ILE ILE A . n A 1 53 GLY 53 76 76 GLY GLY A . n A 1 54 TYR 54 77 77 TYR ALA A . n A 1 55 LYS 55 78 78 LYS LYS A . n A 1 56 GLY 56 79 79 GLY GLY A . n A 1 57 ILE 57 80 80 ILE ILE A . n A 1 58 GLU 58 81 81 GLU GLU A . n A 1 59 GLU 59 82 82 GLU GLU A . n A 1 60 LEU 60 83 83 LEU LEU A . n A 1 61 ARG 61 84 84 ARG ARG A . n A 1 62 LYS 62 85 85 LYS LYS A . n A 1 63 LEU 63 86 86 LEU LEU A . n A 1 64 ILE 64 87 87 ILE ILE A . n A 1 65 GLU 65 88 88 GLU GLU A . n A 1 66 LYS 66 89 89 LYS LYS A . n A 1 67 ALA 67 90 90 ALA ALA A . n A 1 68 SER 68 91 91 SER SER A . n A 1 69 GLU 69 92 92 GLU GLU A . n A 1 70 HIS 70 93 93 HIS HIS A . n A 1 71 ASN 71 94 94 ASN ASN A . n A 1 72 ILE 72 95 95 ILE ILE A . n A 1 73 LYS 73 96 96 LYS LYS A . n A 1 74 VAL 74 97 97 VAL VAL A . n A 1 75 GLU 75 98 98 GLU GLU A . n A 1 76 TYR 76 99 99 TYR TYR A . n A 1 77 TYR 77 100 100 TYR TYR A . n A 1 78 GLY 78 101 101 GLY GLY A . n A 1 79 GLU 79 102 102 GLU GLU A . n A 1 80 ARG 80 103 103 ARG ARG A . n A 1 81 PRO 81 104 104 PRO PRO A . n A 1 82 THR 82 105 105 THR THR A . n A 1 83 ARG 83 106 106 ARG ARG A . n A 1 84 GLU 84 107 107 GLU GLU A . n A 1 85 GLU 85 108 108 GLU GLU A . n A 1 86 ILE 86 109 109 ILE ILE A . n A 1 87 PHE 87 110 110 PHE PHE A . n A 1 88 LEU 88 111 111 LEU LEU A . n A 1 89 ALA 89 112 112 ALA ALA A . n A 1 90 LYS 90 113 113 LYS LYS A . n A 1 91 SER 91 114 114 SER SER A . n A 1 92 GLY 92 115 115 GLY GLY A . n A 1 93 GLU 93 116 116 GLU GLU A . n A 1 94 ILE 94 117 117 ILE ILE A . n A 1 95 ASP 95 118 118 ASP ASP A . n A 1 96 ALA 96 119 119 ALA ALA A . n A 1 97 MSE 97 120 120 MSE MSE A . n A 1 98 ILE 98 121 121 ILE ILE A . n A 1 99 ARG 99 122 122 ARG ARG A . n A 1 100 LYS 100 123 123 LYS LYS A . n A 1 101 VAL 101 124 124 VAL VAL A . n A 1 102 ALA 102 125 125 ALA ALA A . n A 1 103 LYS 103 126 126 LYS LYS A . n A 1 104 GLU 104 127 127 GLU GLU A . n A 1 105 THR 105 128 128 THR THR A . n A 1 106 ASN 106 129 129 ASN ASN A . n A 1 107 SER 107 130 130 SER SER A . n A 1 108 ILE 108 131 131 ILE ILE A . n A 1 109 LEU 109 132 132 LEU LEU A . n A 1 110 LEU 110 133 133 LEU LEU A . n A 1 111 THR 111 134 134 THR THR A . n A 1 112 SER 112 135 135 SER SER A . n A 1 113 ASP 113 136 136 ASP ASP A . n A 1 114 TRP 114 137 137 TRP TRP A . n A 1 115 ILE 115 138 138 ILE ILE A . n A 1 116 GLN 116 139 139 GLN GLN A . n A 1 117 TYR 117 140 140 TYR TYR A . n A 1 118 ASN 118 141 141 ASN ASN A . n A 1 119 LEU 119 142 142 LEU LEU A . n A 1 120 ALA 120 143 143 ALA ALA A . n A 1 121 LYS 121 144 144 LYS LYS A . n A 1 122 ALA 122 145 145 ALA ALA A . n A 1 123 GLN 123 146 146 GLN GLN A . n A 1 124 GLY 124 147 147 GLY GLY A . n A 1 125 ILE 125 148 148 ILE ILE A . n A 1 126 GLU 126 149 149 GLU GLU A . n A 1 127 ALA 127 150 150 ALA ALA A . n A 1 128 TYR 128 151 151 TYR TYR A . n A 1 129 PHE 129 152 152 PHE PHE A . n A 1 130 LEU 130 153 153 LEU LEU A . n A 1 131 GLU 131 154 154 GLU GLU A . n A 1 132 ALA 132 155 155 ALA ALA A . n A 1 133 ALA 133 156 156 ALA ALA A . n A 1 134 GLU 134 157 157 GLU GLU A . n A 1 135 GLU 135 158 158 GLU GLU A . n A 1 136 GLU 136 159 159 GLU GLU A . n A 1 137 VAL 137 160 160 VAL VAL A . n A 1 138 GLU 138 161 161 GLU GLU A . n A 1 139 LEU 139 162 162 LEU LEU A . n A 1 140 VAL 140 163 163 VAL VAL A . n A 1 141 LEU 141 164 164 LEU LEU A . n A 1 142 ASP 142 165 165 ASP ASP A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 1 1 CL CL A . C 3 PEG 1 166 1 PEG PEG A . D 4 FMT 1 167 1 FMT FMT A . E 4 FMT 1 2 2 FMT FMT A . F 4 FMT 1 3 3 FMT FMT A . G 5 ACT 1 168 1 ACT ACT A . H 5 ACT 1 169 2 ACT ACT A . I 6 HOH 1 4 4 HOH HOH A . I 6 HOH 2 5 5 HOH HOH A . I 6 HOH 3 170 1 HOH HOH A . I 6 HOH 4 171 2 HOH HOH A . I 6 HOH 5 172 3 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 48 A MSE 71 ? MET SELENOMETHIONINE 2 A MSE 97 A MSE 120 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I 2 1,2 A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 3550 ? 2 MORE -5 ? 2 'SSA (A^2)' 16120 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0.0000000000 -1.0000000000 0.0000000000 87.9880000000 -1.0000000000 0.0000000000 0.0000000000 87.9880000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id CL _pdbx_struct_special_symmetry.auth_seq_id 1 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id CL _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-07-21 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2019-07-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 39.9235 44.6253 4.3972 0.3488 0.5906 0.3567 -0.1820 -0.0522 0.2728 2.7444 1.3937 1.5733 2.3117 -0.9321 -0.3814 -0.0859 1.2945 1.1882 -0.4586 0.9798 1.4534 0.6357 -0.9581 -0.1964 'X-RAY DIFFRACTION' 2 ? ? ? ? ? 0.5196 0.8831 1.3827 0.0100 0.0794 0.4841 0.2798 2.3586 1.2528 1.6338 -1.1817 -2.0305 0.1446 0.8861 1.9948 -0.2662 0.5559 2.2790 -1.0227 -2.1604 -0.4198 'X-RAY DIFFRACTION' 3 ? ? ? ? ? 0.6511 0.6728 0.3514 -0.3467 0.0286 0.1555 0.5482 1.8991 5.5186 0.5120 0.2537 0.4417 -0.4978 0.5497 0.2091 0.2311 0.6618 1.4557 1.7374 0.9457 -0.2846 'X-RAY DIFFRACTION' 4 ? ? ? ? ? 1.2818 0.7499 1.2618 -0.3328 0.6734 -0.3703 0.0876 1.2146 0.6832 0.3089 0.0637 -0.6632 1.1425 -1.3756 1.0920 1.1581 -0.7291 1.0483 -0.3653 -0.8926 -0.4033 'X-RAY DIFFRACTION' 5 ? ? ? ? ? 0.5087 0.4071 0.3378 -0.1546 0.0547 0.0858 0.8676 2.0264 1.0555 0.3866 -0.7962 -0.8172 0.4586 -0.9422 -0.7042 0.1404 -0.1321 -0.4246 0.3444 -0.1707 -0.1460 'X-RAY DIFFRACTION' 6 ? ? ? ? ? 0.4160 0.2941 0.1778 -0.0981 0.0365 0.1435 0.8488 2.3881 1.1351 1.4919 -0.0659 0.5909 -0.0877 0.3870 0.5472 0.6934 0.3049 0.4422 0.9528 -0.1261 -0.1321 'X-RAY DIFFRACTION' 7 ? ? ? ? ? 0.3128 0.3846 0.3301 -0.0377 -0.0395 0.1886 0.5399 1.2761 0.2428 0.4608 -0.2205 0.7935 1.5118 -0.3354 -0.6637 -0.1353 -1.6901 -1.1130 0.1219 0.1497 -0.0053 'X-RAY DIFFRACTION' 8 ? ? ? ? ? 0.2059 0.2227 0.2075 -0.0409 -0.0174 0.0523 0.0477 -0.2800 2.2636 0.5505 -1.5234 -0.4807 0.0910 0.0374 -0.1317 0.0108 0.0209 -0.1621 0.0477 -0.0104 -0.1693 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details 'chain A resid 148:165' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement . ? 1 SHELXD phasing . ? 2 MLPHARE phasing . ? 3 DM 'model building' . ? 4 RESOLVE 'model building' . ? 5 HKL-3000 phasing . ? 6 REFMAC refinement 5.5.0054 ? 7 HKL-3000 'data reduction' . ? 8 HKL-3000 'data scaling' . ? 9 DM phasing . ? 10 RESOLVE phasing . ? 11 SBC-Collect 'data collection' . ? 12 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 38 ? ? -37.28 -25.61 2 1 LEU A 50 ? ? -140.39 51.11 3 1 ASN A 94 ? ? 37.49 48.48 4 1 SER A 114 ? ? -28.77 156.34 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TYR 77 ? CG ? A TYR 54 CG 2 1 Y 1 A TYR 77 ? CD1 ? A TYR 54 CD1 3 1 Y 1 A TYR 77 ? CD2 ? A TYR 54 CD2 4 1 Y 1 A TYR 77 ? CE1 ? A TYR 54 CE1 5 1 Y 1 A TYR 77 ? CE2 ? A TYR 54 CE2 6 1 Y 1 A TYR 77 ? CZ ? A TYR 54 CZ 7 1 Y 1 A TYR 77 ? OH ? A TYR 54 OH # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 24 ? A SER 1 2 1 Y 1 A ASN 25 ? A ASN 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'DI(HYDROXYETHYL)ETHER' PEG 4 'FORMIC ACID' FMT 5 'ACETATE ION' ACT 6 water HOH #