HEADER TRANSFERASE 13-JUL-09 3I9Y TITLE CRYSTAL STRUCTURE OF THE V. PARAHAEMOLYTICUS HISTIDINE KINASE SENSOR TITLE 2 TORS SENSOR DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.13.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS; SOURCE 3 ORGANISM_TAXID: 670; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: TORS, VPA0675; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETDUETT KEYWDS STACKED TWO FOUR-HELIX BUNDLES, ATP-BINDING, KINASE, NUCLEOTIDE- KEYWDS 2 BINDING, PHOSPHOPROTEIN, TRANSFERASE, TRANSMEMBRANE, TWO-COMPONENT KEYWDS 3 REGULATORY SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.O.MOORE,W.A.HENDRICKSON REVDAT 3 21-FEB-24 3I9Y 1 SEQADV REVDAT 2 01-NOV-17 3I9Y 1 REMARK REVDAT 1 06-OCT-09 3I9Y 0 JRNL AUTH J.O.MOORE,W.A.HENDRICKSON JRNL TITL STRUCTURAL ANALYSIS OF SENSOR DOMAINS FROM THE JRNL TITL 2 TMAO-RESPONSIVE HISTIDINE KINASE RECEPTOR TORS JRNL REF STRUCTURE V. 17 1195 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19748340 JRNL DOI 10.1016/J.STR.2009.07.015 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1777269.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1505 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4452 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 224 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1854 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.71000 REMARK 3 B22 (A**2) : 0.71000 REMARK 3 B33 (A**2) : -1.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.15 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.056 REMARK 3 BOND ANGLES (DEGREES) : 3.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.470 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 56.55 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3I9Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000054149. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.98950,0.97940,0.97912,0.96863 REMARK 200 MONOCHROMATOR : SYSTEM CONSISTING OF A REMARK 200 HORIZONTALLY DEFLECTING AND REMARK 200 FOCUSING CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29951 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.41900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE 2.11 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7-13% PEG 4000, 0.1M TRIS PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.47467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.23733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.35600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 7.11867 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.59333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 47 REMARK 465 SER A 48 REMARK 465 GLY A 49 REMARK 465 GLN A 164 REMARK 465 VAL A 165 REMARK 465 GLN A 166 REMARK 465 ASN A 167 REMARK 465 THR A 168 REMARK 465 SER A 169 REMARK 465 THR A 170 REMARK 465 ILE A 171 REMARK 465 ALA A 172 REMARK 465 VAL A 173 REMARK 465 ALA A 174 REMARK 465 ASN A 175 REMARK 465 VAL A 176 REMARK 465 THR A 177 REMARK 465 HIS A 178 REMARK 465 ILE A 179 REMARK 465 TYR A 180 REMARK 465 ASP A 181 REMARK 465 LEU A 182 REMARK 465 LEU A 183 REMARK 465 GLU A 184 REMARK 465 ALA A 185 REMARK 465 ASN A 186 REMARK 465 LYS A 187 REMARK 465 LYS A 188 REMARK 465 ASP A 189 REMARK 465 GLN A 190 REMARK 465 VAL A 191 REMARK 465 TYR A 192 REMARK 465 GLN A 193 REMARK 465 ALA A 194 REMARK 465 LEU A 195 REMARK 465 ASP A 196 REMARK 465 ALA A 197 REMARK 465 LEU A 198 REMARK 465 VAL A 199 REMARK 465 GLU A 200 REMARK 465 VAL A 201 REMARK 465 ASP A 202 REMARK 465 ASN A 318 REMARK 465 LYS A 319 REMARK 465 THR A 320 REMARK 465 THR A 321 REMARK 465 THR A 322 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 60 CD GLU A 60 OE1 0.070 REMARK 500 GLU A 60 CD GLU A 60 OE2 0.139 REMARK 500 THR A 63 CB THR A 63 CG2 -0.210 REMARK 500 ARG A 64 CZ ARG A 64 NH2 0.113 REMARK 500 GLU A 78 CG GLU A 78 CD 0.118 REMARK 500 GLU A 78 CD GLU A 78 OE2 0.071 REMARK 500 GLN A 79 CG GLN A 79 CD 0.141 REMARK 500 VAL A 87 CB VAL A 87 CG2 -0.235 REMARK 500 PHE A 89 CZ PHE A 89 CE2 0.121 REMARK 500 GLU A 93 CG GLU A 93 CD 0.205 REMARK 500 GLU A 101 CB GLU A 101 CG -0.173 REMARK 500 PHE A 107 CB PHE A 107 CG 0.114 REMARK 500 GLU A 116 CD GLU A 116 OE2 0.071 REMARK 500 THR A 132 CB THR A 132 CG2 -0.205 REMARK 500 VAL A 133 CB VAL A 133 CG2 0.134 REMARK 500 GLU A 134 CG GLU A 134 CD 0.099 REMARK 500 GLU A 134 CD GLU A 134 OE1 0.072 REMARK 500 GLU A 134 CD GLU A 134 OE2 0.083 REMARK 500 TRP A 138 CB TRP A 138 CG -0.113 REMARK 500 TRP A 138 CE3 TRP A 138 CZ3 0.121 REMARK 500 LYS A 141 CD LYS A 141 CE 0.208 REMARK 500 LYS A 141 CE LYS A 141 NZ 0.150 REMARK 500 GLU A 142 CB GLU A 142 CG 0.217 REMARK 500 GLU A 142 CD GLU A 142 OE1 0.079 REMARK 500 GLU A 142 CD GLU A 142 OE2 0.095 REMARK 500 VAL A 147 CB VAL A 147 CG1 0.135 REMARK 500 GLU A 148 CD GLU A 148 OE1 0.080 REMARK 500 MET A 150 SD MET A 150 CE -0.540 REMARK 500 GLU A 155 CB GLU A 155 CG 0.172 REMARK 500 GLU A 155 CG GLU A 155 CD 0.141 REMARK 500 GLU A 155 CD GLU A 155 OE1 0.177 REMARK 500 GLU A 155 CD GLU A 155 OE2 0.138 REMARK 500 GLU A 156 CB GLU A 156 CG -0.155 REMARK 500 GLU A 207 CG GLU A 207 CD 0.149 REMARK 500 GLU A 207 CD GLU A 207 OE2 0.081 REMARK 500 ARG A 208 CZ ARG A 208 NH1 0.079 REMARK 500 GLU A 211 CG GLU A 211 CD 0.220 REMARK 500 GLU A 211 CD GLU A 211 OE1 0.165 REMARK 500 GLU A 211 CD GLU A 211 OE2 0.074 REMARK 500 LYS A 218 CB LYS A 218 CG 0.189 REMARK 500 LYS A 218 CG LYS A 218 CD 0.362 REMARK 500 LYS A 218 CD LYS A 218 CE 0.193 REMARK 500 LYS A 218 CE LYS A 218 NZ 0.401 REMARK 500 GLU A 225 CD GLU A 225 OE2 0.078 REMARK 500 ARG A 251 CZ ARG A 251 NH1 0.080 REMARK 500 GLU A 257 CG GLU A 257 CD 0.105 REMARK 500 LYS A 274 CE LYS A 274 NZ 0.228 REMARK 500 ARG A 275 CG ARG A 275 CD -0.158 REMARK 500 GLU A 287 CG GLU A 287 CD 0.171 REMARK 500 GLU A 290 CB GLU A 290 CG -0.162 REMARK 500 REMARK 500 THIS ENTRY HAS 60 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 60 OE1 - CD - OE2 ANGL. DEV. = 9.2 DEGREES REMARK 500 GLU A 60 CG - CD - OE1 ANGL. DEV. = -15.2 DEGREES REMARK 500 ARG A 64 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 SER A 67 CA - CB - OG ANGL. DEV. = -16.4 DEGREES REMARK 500 LEU A 88 CB - CG - CD2 ANGL. DEV. = -11.3 DEGREES REMARK 500 LEU A 95 CB - CG - CD2 ANGL. DEV. = -12.0 DEGREES REMARK 500 LYS A 141 CB - CG - CD ANGL. DEV. = -18.0 DEGREES REMARK 500 MET A 150 CG - SD - CE ANGL. DEV. = -15.8 DEGREES REMARK 500 ARG A 151 NE - CZ - NH2 ANGL. DEV. = 5.6 DEGREES REMARK 500 LEU A 153 CB - CG - CD1 ANGL. DEV. = -10.9 DEGREES REMARK 500 LEU A 157 CB - CG - CD2 ANGL. DEV. = -17.0 DEGREES REMARK 500 ARG A 208 CG - CD - NE ANGL. DEV. = -13.9 DEGREES REMARK 500 ARG A 208 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 208 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 LYS A 218 CG - CD - CE ANGL. DEV. = 21.0 DEGREES REMARK 500 LYS A 218 CD - CE - NZ ANGL. DEV. = 22.2 DEGREES REMARK 500 ARG A 227 NH1 - CZ - NH2 ANGL. DEV. = -8.8 DEGREES REMARK 500 ARG A 227 NE - CZ - NH1 ANGL. DEV. = 12.9 DEGREES REMARK 500 ARG A 227 NE - CZ - NH2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ARG A 275 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 VAL A 277 CG1 - CB - CG2 ANGL. DEV. = -14.4 DEGREES REMARK 500 LEU A 295 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 LEU A 295 CB - CG - CD1 ANGL. DEV. = 12.7 DEGREES REMARK 500 ASP A 315 CB - CG - OD1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP A 315 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 316 C - N - CA ANGL. DEV. = 16.6 DEGREES REMARK 500 SER A 317 N - CA - C ANGL. DEV. = -20.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 105 32.33 -93.54 REMARK 500 ASP A 108 98.35 -62.35 REMARK 500 ALA A 255 1.02 -63.97 REMARK 500 ASP A 315 73.48 -101.82 REMARK 500 ASP A 316 16.68 -140.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 227 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 3I9Y A 51 322 UNP Q87ID1 Q87ID1_VIBPA 51 322 SEQADV 3I9Y GLY A 47 UNP Q87ID1 EXPRESSION TAG SEQADV 3I9Y SER A 48 UNP Q87ID1 EXPRESSION TAG SEQADV 3I9Y GLY A 49 UNP Q87ID1 EXPRESSION TAG SEQADV 3I9Y SER A 50 UNP Q87ID1 EXPRESSION TAG SEQRES 1 A 276 GLY SER GLY SER ALA MET ILE GLU ALA ARG GLN VAL SER SEQRES 2 A 276 GLU LEU SER THR ARG ILE ILE SER SER VAL GLN MET LEU SEQRES 3 A 276 SER ASN ALA GLN ASN GLU GLN GLU ARG LYS GLU ALA GLY SEQRES 4 A 276 ARG VAL LEU PHE GLU GLN LEU GLU SER LEU LEU THR HIS SEQRES 5 A 276 ILE LYS GLU LEU GLY GLY GLU SER PHE ASP SER LYS LEU SEQRES 6 A 276 LEU ASP ALA LEU GLU SER ASN VAL GLN ASN VAL ILE ASN SEQRES 7 A 276 ASN LEU ALA GLU LEU GLY VAL THR VAL GLU ARG LYS LEU SEQRES 8 A 276 TRP LEU ALA LYS GLU ILE ASP THR ARG VAL GLU GLU MET SEQRES 9 A 276 ARG LEU LEU SER GLU GLU LEU GLU GLN LEU THR ARG THR SEQRES 10 A 276 GLN VAL GLN ASN THR SER THR ILE ALA VAL ALA ASN VAL SEQRES 11 A 276 THR HIS ILE TYR ASP LEU LEU GLU ALA ASN LYS LYS ASP SEQRES 12 A 276 GLN VAL TYR GLN ALA LEU ASP ALA LEU VAL GLU VAL ASP SEQRES 13 A 276 LEU ASP LEU THR GLU ARG LEU HIS GLU LEU HIS LEU LEU SEQRES 14 A 276 ALA PHE LYS MET LEU ASN GLN ILE GLU GLU ALA ARG THR SEQRES 15 A 276 LEU THR ASN VAL ASP ARG ILE GLN GLN ILE GLN THR ALA SEQRES 16 A 276 PHE GLU ASN ASN LEU LYS ILE MET LYS ARG ARG VAL LEU SEQRES 17 A 276 ALA VAL GLU ASP PRO THR ARG SER LYS GLN MET SER GLN SEQRES 18 A 276 LEU LEU THR GLU LEU GLY LYS ARG GLN VAL VAL PHE THR SEQRES 19 A 276 ILE LEU LEU GLN GLN TYR GLU ASN ASN GLU GLN SER GLN SEQRES 20 A 276 GLN LEU MET GLN LYS THR LEU GLU LEU PHE SER GLU LEU SEQRES 21 A 276 ASN SER THR VAL ASN LYS LEU VAL ASP ASP SER ASN LYS SEQRES 22 A 276 THR THR THR FORMUL 2 HOH *72(H2 O) HELIX 1 1 SER A 50 ASN A 74 1 25 HELIX 2 2 ASN A 77 GLU A 105 1 29 HELIX 3 3 ASP A 108 THR A 161 1 54 HELIX 4 4 LEU A 203 ARG A 227 1 25 HELIX 5 5 ASN A 231 ALA A 255 1 25 HELIX 6 6 ASP A 258 ARG A 275 1 18 HELIX 7 7 VAL A 277 VAL A 314 1 38 CRYST1 149.880 149.880 42.712 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006672 0.003852 0.000000 0.00000 SCALE2 0.000000 0.007704 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023413 0.00000