HEADER HYDROLASE 14-JUL-09 3IAR TITLE THE CRYSTAL STRUCTURE OF HUMAN ADENOSINE DEAMINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE DEAMINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 5-363; COMPND 5 SYNONYM: ADENOSINE AMINOHYDROLASE; COMPND 6 EC: 3.5.4.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC-CTHF KEYWDS DEAMINASE, ADENOSINE DEAMINASE, ADENOSINE, PURINE METABOLISM, KEYWDS 2 STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, DISEASE KEYWDS 3 MUTATION, HEREDITARY HEMOLYTIC ANEMIA, HYDROLASE, NUCLEOTIDE KEYWDS 4 METABOLISM, SCID EXPDTA X-RAY DIFFRACTION AUTHOR E.UGOCHUKWU,Y.ZHANG,E.HAPKA,W.W.YUE,J.E.BRAY,J.MUNIZ,N.BURGESS-BROWN, AUTHOR 2 A.CHAIKUAD,F.VON DELFT,C.BOUNTRA,C.H.ARROWSMITH,J.WEIGELT,A.EDWARDS, AUTHOR 3 K.L.KAVANAGH,U.OPPERMANN,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 06-SEP-23 3IAR 1 REMARK SEQADV LINK REVDAT 2 13-JUL-11 3IAR 1 VERSN REVDAT 1 11-AUG-09 3IAR 0 JRNL AUTH E.UGOCHUKWU,Y.ZHANG,E.HAPKA,W.W.YUE,J.E.BRAY,J.MUNIZ, JRNL AUTH 2 N.BURGESS-BROWN,A.CHAIKUAD,K.L.KAVANAGH,U.OPPERMANN JRNL TITL THE CRYSTAL STRUCTURE OF HUMAN ADENOSINE DEAMINASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 52324 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.630 REMARK 3 FREE R VALUE TEST SET COUNT : 1901 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7035 - 3.6613 0.99 3869 143 0.1360 0.1707 REMARK 3 2 3.6613 - 2.9069 1.00 3756 141 0.1289 0.1513 REMARK 3 3 2.9069 - 2.5397 1.00 3740 135 0.1360 0.1640 REMARK 3 4 2.5397 - 2.3076 1.00 3704 140 0.1341 0.1660 REMARK 3 5 2.3076 - 2.1422 1.00 3706 142 0.1240 0.1598 REMARK 3 6 2.1422 - 2.0160 1.00 3678 137 0.1280 0.1743 REMARK 3 7 2.0160 - 1.9150 1.00 3655 146 0.1299 0.1796 REMARK 3 8 1.9150 - 1.8317 1.00 3675 133 0.1334 0.2047 REMARK 3 9 1.8317 - 1.7612 1.00 3675 134 0.1359 0.1575 REMARK 3 10 1.7612 - 1.7004 1.00 3628 131 0.1340 0.1726 REMARK 3 11 1.7004 - 1.6472 0.99 3645 151 0.1373 0.1645 REMARK 3 12 1.6472 - 1.6002 0.98 3585 129 0.1495 0.1673 REMARK 3 13 1.6002 - 1.5580 0.92 3342 134 0.1680 0.2053 REMARK 3 14 1.5580 - 1.5200 0.76 2765 105 0.1939 0.2191 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 32.94 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.550 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3020 REMARK 3 ANGLE : 1.518 4106 REMARK 3 CHIRALITY : 0.098 444 REMARK 3 PLANARITY : 0.009 540 REMARK 3 DIHEDRAL : 16.224 1123 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 3:74) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2713 7.4552 -4.6709 REMARK 3 T TENSOR REMARK 3 T11: 0.0861 T22: 0.0820 REMARK 3 T33: -0.0094 T12: -0.0044 REMARK 3 T13: 0.0036 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.1280 L22: 0.0410 REMARK 3 L33: 0.0419 L12: 0.0334 REMARK 3 L13: 0.1902 L23: 0.0008 REMARK 3 S TENSOR REMARK 3 S11: -0.0196 S12: 0.0749 S13: -0.0133 REMARK 3 S21: -0.0411 S22: 0.0249 S23: -0.0058 REMARK 3 S31: -0.0298 S32: 0.0284 S33: -0.0048 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 75:196) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7735 2.2968 9.4301 REMARK 3 T TENSOR REMARK 3 T11: 0.0792 T22: 0.0609 REMARK 3 T33: -0.0250 T12: 0.0009 REMARK 3 T13: -0.0148 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.0787 L22: 0.1254 REMARK 3 L33: 0.0111 L12: -0.0322 REMARK 3 L13: 0.0169 L23: -0.0810 REMARK 3 S TENSOR REMARK 3 S11: 0.0149 S12: 0.0012 S13: -0.0046 REMARK 3 S21: 0.0749 S22: -0.0198 S23: -0.0149 REMARK 3 S31: -0.0408 S32: 0.0024 S33: 0.0081 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 197:238) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0428 -12.3661 9.2914 REMARK 3 T TENSOR REMARK 3 T11: 0.0703 T22: 0.0368 REMARK 3 T33: 0.0070 T12: -0.0065 REMARK 3 T13: -0.0035 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 1.0419 L22: -0.1887 REMARK 3 L33: 1.6956 L12: -0.0177 REMARK 3 L13: 0.7330 L23: 0.0441 REMARK 3 S TENSOR REMARK 3 S11: 0.0299 S12: -0.0331 S13: -0.1269 REMARK 3 S21: 0.0275 S22: 0.0289 S23: 0.0074 REMARK 3 S31: -0.0428 S32: -0.0962 S33: -0.0626 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 239:256) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4473 -15.7957 3.1508 REMARK 3 T TENSOR REMARK 3 T11: 0.0857 T22: 0.0875 REMARK 3 T33: 0.0791 T12: -0.0273 REMARK 3 T13: 0.0139 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 0.7238 L22: -0.2019 REMARK 3 L33: 0.8145 L12: 0.0304 REMARK 3 L13: -0.3652 L23: 0.0877 REMARK 3 S TENSOR REMARK 3 S11: 0.0132 S12: 0.0044 S13: -0.1347 REMARK 3 S21: -0.0091 S22: -0.0072 S23: -0.0676 REMARK 3 S31: -0.0706 S32: 0.0080 S33: -0.0038 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 257:339) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2726 -0.4035 -2.7503 REMARK 3 T TENSOR REMARK 3 T11: 0.0561 T22: 0.0629 REMARK 3 T33: -0.0274 T12: 0.0013 REMARK 3 T13: -0.0066 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.2440 L22: 0.1657 REMARK 3 L33: -0.2251 L12: -0.0116 REMARK 3 L13: -0.0591 L23: -0.0720 REMARK 3 S TENSOR REMARK 3 S11: 0.0172 S12: 0.0314 S13: -0.0120 REMARK 3 S21: -0.0243 S22: -0.0112 S23: 0.0108 REMARK 3 S31: -0.0367 S32: 0.0140 S33: -0.0017 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 340:362) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4976 7.9565 12.5073 REMARK 3 T TENSOR REMARK 3 T11: 0.0614 T22: 0.0851 REMARK 3 T33: 0.0049 T12: 0.0049 REMARK 3 T13: 0.0292 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: -0.0007 L22: 0.1822 REMARK 3 L33: 0.1382 L12: 0.0283 REMARK 3 L13: 0.0364 L23: 0.0450 REMARK 3 S TENSOR REMARK 3 S11: 0.0087 S12: -0.0094 S13: 0.0072 REMARK 3 S21: 0.1216 S22: 0.0230 S23: 0.0384 REMARK 3 S31: -0.0673 S32: -0.1546 S33: -0.0303 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3IAR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054178. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54180 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52538 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 29.698 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : 0.04800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.25100 REMARK 200 R SYM FOR SHELL (I) : 0.25100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1KRM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.20M NANO3, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.53500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.33000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.75500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.33000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.53500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.75500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 4 REMARK 465 GLU A 365 REMARK 465 ASN A 366 REMARK 465 LEU A 367 REMARK 465 TYR A 368 REMARK 465 PHE A 369 REMARK 465 GLN A 370 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 44 CD OE1 OE2 REMARK 470 GLN A 138 CD OE1 NE2 REMARK 470 GLU A 320 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 696 O HOH A 989 1.98 REMARK 500 O HOH A 458 O HOH A 697 2.04 REMARK 500 O HOH A 482 O HOH A 965 2.12 REMARK 500 O HOH A 792 O HOH A 1033 2.15 REMARK 500 O HOH A 433 O HOH A 946 2.16 REMARK 500 O HOH A 529 O HOH A 1044 2.17 REMARK 500 O HOH A 394 O HOH A 985 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 8 45.54 -87.45 REMARK 500 ASP A 8 43.20 -90.85 REMARK 500 LEU A 56 -119.16 -118.30 REMARK 500 THR A 176 -14.78 90.49 REMARK 500 HIS A 238 -86.13 75.15 REMARK 500 ASP A 295 -77.42 70.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 1 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 15 NE2 REMARK 620 2 HIS A 17 NE2 110.4 REMARK 620 3 HIS A 214 NE2 88.9 94.5 REMARK 620 4 ASP A 295 OD1 87.7 92.8 172.7 REMARK 620 5 3D1 A 501 N6 128.1 121.4 90.6 86.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3D1 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 372 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KRM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOVINE ADENOSINE DEAMINASE COMPLEXED WITH 6- REMARK 900 HYDROXYL-1,6-DIHYDROPURINE RIBOSIDE DBREF 3IAR A 5 363 UNP P00813 ADA_HUMAN 5 363 SEQADV 3IAR MET A 4 UNP P00813 INITIATING METHIONINE SEQADV 3IAR ALA A 364 UNP P00813 EXPRESSION TAG SEQADV 3IAR GLU A 365 UNP P00813 EXPRESSION TAG SEQADV 3IAR ASN A 366 UNP P00813 EXPRESSION TAG SEQADV 3IAR LEU A 367 UNP P00813 EXPRESSION TAG SEQADV 3IAR TYR A 368 UNP P00813 EXPRESSION TAG SEQADV 3IAR PHE A 369 UNP P00813 EXPRESSION TAG SEQADV 3IAR GLN A 370 UNP P00813 EXPRESSION TAG SEQRES 1 A 367 MET PRO ALA PHE ASP LYS PRO LYS VAL GLU LEU HIS VAL SEQRES 2 A 367 HIS LEU ASP GLY SER ILE LYS PRO GLU THR ILE LEU TYR SEQRES 3 A 367 TYR GLY ARG ARG ARG GLY ILE ALA LEU PRO ALA ASN THR SEQRES 4 A 367 ALA GLU GLY LEU LEU ASN VAL ILE GLY MET ASP LYS PRO SEQRES 5 A 367 LEU THR LEU PRO ASP PHE LEU ALA LYS PHE ASP TYR TYR SEQRES 6 A 367 MET PRO ALA ILE ALA GLY CYS ARG GLU ALA ILE LYS ARG SEQRES 7 A 367 ILE ALA TYR GLU PHE VAL GLU MET LYS ALA LYS GLU GLY SEQRES 8 A 367 VAL VAL TYR VAL GLU VAL ARG TYR SER PRO HIS LEU LEU SEQRES 9 A 367 ALA ASN SER LYS VAL GLU PRO ILE PRO TRP ASN GLN ALA SEQRES 10 A 367 GLU GLY ASP LEU THR PRO ASP GLU VAL VAL ALA LEU VAL SEQRES 11 A 367 GLY GLN GLY LEU GLN GLU GLY GLU ARG ASP PHE GLY VAL SEQRES 12 A 367 LYS ALA ARG SER ILE LEU CYS CYS MET ARG HIS GLN PRO SEQRES 13 A 367 ASN TRP SER PRO LYS VAL VAL GLU LEU CYS LYS LYS TYR SEQRES 14 A 367 GLN GLN GLN THR VAL VAL ALA ILE ASP LEU ALA GLY ASP SEQRES 15 A 367 GLU THR ILE PRO GLY SER SER LEU LEU PRO GLY HIS VAL SEQRES 16 A 367 GLN ALA TYR GLN GLU ALA VAL LYS SER GLY ILE HIS ARG SEQRES 17 A 367 THR VAL HIS ALA GLY GLU VAL GLY SER ALA GLU VAL VAL SEQRES 18 A 367 LYS GLU ALA VAL ASP ILE LEU LYS THR GLU ARG LEU GLY SEQRES 19 A 367 HIS GLY TYR HIS THR LEU GLU ASP GLN ALA LEU TYR ASN SEQRES 20 A 367 ARG LEU ARG GLN GLU ASN MET HIS PHE GLU ILE CYS PRO SEQRES 21 A 367 TRP SER SER TYR LEU THR GLY ALA TRP LYS PRO ASP THR SEQRES 22 A 367 GLU HIS ALA VAL ILE ARG LEU LYS ASN ASP GLN ALA ASN SEQRES 23 A 367 TYR SER LEU ASN THR ASP ASP PRO LEU ILE PHE LYS SER SEQRES 24 A 367 THR LEU ASP THR ASP TYR GLN MET THR LYS ARG ASP MET SEQRES 25 A 367 GLY PHE THR GLU GLU GLU PHE LYS ARG LEU ASN ILE ASN SEQRES 26 A 367 ALA ALA LYS SER SER PHE LEU PRO GLU ASP GLU LYS ARG SEQRES 27 A 367 GLU LEU LEU ASP LEU LEU TYR LYS ALA TYR GLY MET PRO SEQRES 28 A 367 PRO SER ALA SER ALA GLY GLN ASN LEU ALA GLU ASN LEU SEQRES 29 A 367 TYR PHE GLN HET 3D1 A 501 18 HET NI A 1 1 HET NO3 A 371 4 HET NO3 A 2 4 HET GOL A 372 6 HETNAM 3D1 (2R,3S,5R)-5-(6-AMINO-9H-PURIN-9-YL)-TETRAHYDRO-2- HETNAM 2 3D1 (HYDROXYMETHYL)FURAN-3-OL HETNAM NI NICKEL (II) ION HETNAM NO3 NITRATE ION HETNAM GOL GLYCEROL HETSYN 3D1 2'-DEOXYADENOSINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 3D1 C10 H13 N5 O3 FORMUL 3 NI NI 2+ FORMUL 4 NO3 2(N O3 1-) FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *691(H2 O) HELIX 1 1 HIS A 17 SER A 21 5 5 HELIX 2 2 LYS A 23 GLY A 35 1 13 HELIX 3 3 THR A 42 GLY A 51 1 10 HELIX 4 4 THR A 57 ALA A 63 1 7 HELIX 5 5 LYS A 64 TYR A 67 5 4 HELIX 6 6 TYR A 68 ALA A 73 1 6 HELIX 7 7 CYS A 75 LYS A 92 1 18 HELIX 8 8 SER A 103 ALA A 108 5 6 HELIX 9 9 ILE A 115 GLN A 119 5 5 HELIX 10 10 THR A 125 GLY A 145 1 21 HELIX 11 11 GLN A 158 ASN A 160 5 3 HELIX 12 12 TRP A 161 TYR A 172 1 12 HELIX 13 13 GLY A 190 LEU A 193 5 4 HELIX 14 14 LEU A 194 GLY A 208 1 15 HELIX 15 15 SER A 220 ILE A 230 1 11 HELIX 16 16 TYR A 240 GLU A 244 5 5 HELIX 17 17 ASP A 245 GLU A 255 1 11 HELIX 18 18 CYS A 262 THR A 269 1 8 HELIX 19 19 HIS A 278 ASP A 286 1 9 HELIX 20 20 ASP A 296 LYS A 301 1 6 HELIX 21 21 THR A 303 GLY A 316 1 14 HELIX 22 22 THR A 318 SER A 332 1 15 HELIX 23 23 PRO A 336 GLY A 352 1 17 HELIX 24 24 PRO A 354 LEU A 363 1 10 SHEET 1 A 8 LYS A 11 GLU A 13 0 SHEET 2 A 8 VAL A 95 TYR A 102 1 O VAL A 96 N LYS A 11 SHEET 3 A 8 LYS A 147 MET A 155 1 O CYS A 153 N TYR A 102 SHEET 4 A 8 VAL A 177 ALA A 183 1 O ASP A 181 N CYS A 154 SHEET 5 A 8 HIS A 210 ALA A 215 1 O HIS A 214 N LEU A 182 SHEET 6 A 8 ARG A 235 HIS A 238 1 O GLY A 237 N VAL A 213 SHEET 7 A 8 HIS A 258 ILE A 261 1 O GLU A 260 N LEU A 236 SHEET 8 A 8 TYR A 290 LEU A 292 1 O SER A 291 N PHE A 259 LINK NI NI A 1 NE2 HIS A 15 1555 1555 2.10 LINK NI NI A 1 NE2 HIS A 17 1555 1555 2.04 LINK NI NI A 1 NE2 HIS A 214 1555 1555 2.21 LINK NI NI A 1 OD1 ASP A 295 1555 1555 2.12 LINK NI NI A 1 N6 3D1 A 501 1555 1555 2.15 CISPEP 1 GLU A 113 PRO A 114 0 -4.56 SITE 1 AC1 14 NI A 1 HIS A 17 ASP A 19 LEU A 62 SITE 2 AC1 14 PHE A 65 LEU A 106 GLY A 184 HIS A 214 SITE 3 AC1 14 GLU A 217 HIS A 238 ASP A 295 ASP A 296 SITE 4 AC1 14 HOH A 781 HOH A 814 SITE 1 AC2 5 HIS A 15 HIS A 17 HIS A 214 ASP A 295 SITE 2 AC2 5 3D1 A 501 SITE 1 AC3 7 LYS A 111 THR A 125 PRO A 126 ASP A 127 SITE 2 AC3 7 LYS A 164 HOH A 727 HOH A1058 SITE 1 AC4 10 PRO A 5 PHE A 7 ASP A 8 LYS A 11 SITE 2 AC4 10 TYR A 29 ARG A 33 GLU A 93 ASP A 305 SITE 3 AC4 10 HOH A 702 HOH A 827 SITE 1 AC5 8 PRO A 116 TRP A 117 HIS A 157 HOH A 397 SITE 2 AC5 8 HOH A 485 HOH A 613 HOH A 795 HOH A 797 CRYST1 61.070 73.510 76.660 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016375 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013604 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013045 0.00000