HEADER LYASE 14-JUL-09 3IAU TITLE THE STRUCTURE OF THE PROCESSED FORM OF THREONINE DEAMINASE ISOFORM 2 TITLE 2 FROM SOLANUM LYCOPERSICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: THREONINE DEAMINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 53-415; COMPND 5 SYNONYM: THREONINE DEHYDRATASE BIOSYNTHETIC, CHLOROPLASTIC, TD; COMPND 6 EC: 4.3.1.19; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SOLANUM LYCOPERSICUM; SOURCE 3 ORGANISM_COMMON: TOMATO; SOURCE 4 ORGANISM_TAXID: 4081; SOURCE 5 GENE: TD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL24 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30TD KEYWDS PYRIDOXAL PHOSPHATE, AMINO-ACID BIOSYNTHESIS, DEFENSIVE PROTEIN, KEYWDS 2 JASMONIC ACID PATHWAY, JASMONIC ACID, STRUCTURAL GENOMICS, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI, CENTER FOR EUKARYOTIC STRUCTURAL KEYWDS 4 GENOMICS, CESG, ALLOSTERIC ENZYME, BRANCHED-CHAIN AMINO ACID KEYWDS 5 BIOSYNTHESIS, CHLOROPLAST, ISOLEUCINE BIOSYNTHESIS, LYASE, TRANSIT KEYWDS 6 PEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR C.M.BIANCHETTI,C.A.BINGMAN,G.N.PHILLIPS JR.,CENTER FOR EUKARYOTIC AUTHOR 2 STRUCTURAL GENOMICS (CESG) REVDAT 5 01-NOV-17 3IAU 1 REMARK REVDAT 4 20-APR-11 3IAU 1 JRNL REVDAT 3 23-MAR-11 3IAU 1 JRNL REVDAT 2 01-SEP-10 3IAU 1 AUTHOR JRNL REVDAT 1 28-JUL-09 3IAU 0 JRNL AUTH E.GONZALES-VIGIL,C.M.BIANCHETTI,G.N.PHILLIPS,G.A.HOWE JRNL TITL ADAPTIVE EVOLUTION OF THREONINE DEAMINASE IN PLANT DEFENSE JRNL TITL 2 AGAINST INSECT HERBIVORES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 5897 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21436043 JRNL DOI 10.1073/PNAS.1016157108 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 58785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2979 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5690 - 6.4880 1.00 2937 165 0.1700 0.1830 REMARK 3 2 6.4880 - 5.1520 1.00 2767 152 0.1700 0.2140 REMARK 3 3 5.1520 - 4.5010 1.00 2719 148 0.1380 0.1550 REMARK 3 4 4.5010 - 4.0900 1.00 2710 136 0.1340 0.1640 REMARK 3 5 4.0900 - 3.7970 1.00 2677 140 0.1510 0.1850 REMARK 3 6 3.7970 - 3.5730 1.00 2689 142 0.1510 0.1950 REMARK 3 7 3.5730 - 3.3940 1.00 2660 136 0.1630 0.2020 REMARK 3 8 3.3940 - 3.2460 1.00 2663 113 0.1680 0.2110 REMARK 3 9 3.2460 - 3.1210 1.00 2653 142 0.1640 0.2150 REMARK 3 10 3.1210 - 3.0140 1.00 2630 156 0.1730 0.1930 REMARK 3 11 3.0140 - 2.9200 1.00 2631 136 0.1690 0.2380 REMARK 3 12 2.9200 - 2.8360 1.00 2632 156 0.1630 0.1930 REMARK 3 13 2.8360 - 2.7610 1.00 2610 144 0.1630 0.1990 REMARK 3 14 2.7610 - 2.6940 1.00 2619 151 0.1650 0.2230 REMARK 3 15 2.6940 - 2.6330 1.00 2597 147 0.1570 0.1860 REMARK 3 16 2.6330 - 2.5770 1.00 2641 140 0.1630 0.2060 REMARK 3 17 2.5770 - 2.5250 1.00 2634 121 0.1720 0.2270 REMARK 3 18 2.5250 - 2.4780 1.00 2602 164 0.1680 0.2010 REMARK 3 19 2.4780 - 2.4330 1.00 2628 123 0.1740 0.2190 REMARK 3 20 2.4330 - 2.3920 1.00 2596 139 0.1850 0.2310 REMARK 3 21 2.3920 - 2.3530 0.96 2511 128 0.1990 0.2220 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 49.53 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.960 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.68400 REMARK 3 B22 (A**2) : 1.68400 REMARK 3 B33 (A**2) : -3.36800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5484 REMARK 3 ANGLE : 0.914 7435 REMARK 3 CHIRALITY : 0.061 861 REMARK 3 PLANARITY : 0.003 963 REMARK 3 DIHEDRAL : 16.409 1997 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3IAU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054181. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97957 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : MIRRORS AND BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58877 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 21.50 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 19.90 REMARK 200 R MERGE FOR SHELL (I) : 0.67600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION (10 MG/ML PROTEIN, REMARK 280 0.05 M NACL, 0.003 M NAN3, 0.005 M BIS-TRIS PH 7) MIXED IN A 1:1 REMARK 280 RATIO WITH THE WELL SOLUTION (32% POLYETHYLENE GLYCOL 1500, 0.1 REMARK 280 M LISO4, 0.1 M SODIUM ACETATE PH 4.5). CRYOPROTECTED WITH 32% REMARK 280 POLYETHYLENE GLYCOL 1500, 0.1 M LISO4, 5% ETHYLENE GLYCOL, 0.1 M REMARK 280 SODIUM ACETATE PH 4.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.74200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 169.48400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 127.11300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 211.85500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.37100 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 84.74200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 169.48400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 211.85500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 127.11300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 42.37100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 364 REMARK 465 GLY A 365 REMARK 465 LYS A 366 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 PRO B 3 REMARK 465 ILE B 4 REMARK 465 VAL B 5 REMARK 465 SER B 6 REMARK 465 VAL B 7 REMARK 465 PRO B 8 REMARK 465 ASP B 9 REMARK 465 ILE B 10 REMARK 465 THR B 11 REMARK 465 ALA B 12 REMARK 465 PRO B 13 REMARK 465 VAL B 14 REMARK 465 GLU B 15 REMARK 465 ASN B 16 REMARK 465 VAL B 17 REMARK 465 PRO B 18 REMARK 465 ALA B 19 REMARK 465 GLY B 363 REMARK 465 SER B 364 REMARK 465 GLY B 365 REMARK 465 LYS B 366 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O MET A 1 O MET A 1 12545 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 115 149.37 177.70 REMARK 500 TYR A 160 138.91 -175.14 REMARK 500 PHE A 186 -35.99 -154.47 REMARK 500 ALA A 246 47.36 -144.01 REMARK 500 ALA A 247 48.58 -87.58 REMARK 500 ALA A 346 47.56 -147.56 REMARK 500 PRO B 53 33.38 -86.50 REMARK 500 SER B 115 144.73 -179.78 REMARK 500 PHE B 186 -33.70 -160.75 REMARK 500 ALA B 246 42.40 -146.90 REMARK 500 ALA B 346 43.44 -149.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 15P A 368 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 367 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15P A 368 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 367 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.102508 RELATED DB: TARGETDB DBREF 3IAU A 1 366 UNP P25306 THD1_SOLLC 53 418 DBREF 3IAU B 1 366 UNP P25306 THD1_SOLLC 53 418 SEQRES 1 A 366 MET SER PRO ILE VAL SER VAL PRO ASP ILE THR ALA PRO SEQRES 2 A 366 VAL GLU ASN VAL PRO ALA ILE LEU PRO LYS VAL VAL PRO SEQRES 3 A 366 GLY GLU LEU ILE VAL ASN LYS PRO THR GLY GLY ASP SER SEQRES 4 A 366 ASP GLU LEU PHE GLN TYR LEU VAL ASP ILE LEU ALA SER SEQRES 5 A 366 PRO VAL TYR ASP VAL ALA ILE GLU SER PRO LEU GLU LEU SEQRES 6 A 366 ALA GLU LYS LEU SER ASP ARG LEU GLY VAL ASN PHE TYR SEQRES 7 A 366 ILE LYS ARG GLU ASP LYS GLN ARG VAL PHE SER PHE LLP SEQRES 8 A 366 LEU ARG GLY ALA TYR ASN MET MET SER ASN LEU SER ARG SEQRES 9 A 366 GLU GLU LEU ASP LYS GLY VAL ILE THR ALA SER ALA GLY SEQRES 10 A 366 ASN HIS ALA GLN GLY VAL ALA LEU ALA GLY GLN ARG LEU SEQRES 11 A 366 ASN CYS VAL ALA LYS ILE VAL MET PRO THR THR THR PRO SEQRES 12 A 366 GLN ILE LYS ILE ASP ALA VAL ARG ALA LEU GLY GLY ASP SEQRES 13 A 366 VAL VAL LEU TYR GLY LYS THR PHE ASP GLU ALA GLN THR SEQRES 14 A 366 HIS ALA LEU GLU LEU SER GLU LYS ASP GLY LEU LYS TYR SEQRES 15 A 366 ILE PRO PRO PHE ASP ASP PRO GLY VAL ILE LYS GLY GLN SEQRES 16 A 366 GLY THR ILE GLY THR GLU ILE ASN ARG GLN LEU LYS ASP SEQRES 17 A 366 ILE HIS ALA VAL PHE ILE PRO VAL GLY GLY GLY GLY LEU SEQRES 18 A 366 ILE ALA GLY VAL ALA THR PHE PHE LYS GLN ILE ALA PRO SEQRES 19 A 366 ASN THR LYS ILE ILE GLY VAL GLU PRO TYR GLY ALA ALA SEQRES 20 A 366 SER MET THR LEU SER LEU HIS GLU GLY HIS ARG VAL LYS SEQRES 21 A 366 LEU SER ASN VAL ASP THR PHE ALA ASP GLY VAL ALA VAL SEQRES 22 A 366 ALA LEU VAL GLY GLU TYR THR PHE ALA LYS CYS GLN GLU SEQRES 23 A 366 LEU ILE ASP GLY MET VAL LEU VAL ALA ASN ASP GLY ILE SEQRES 24 A 366 SER ALA ALA ILE LYS ASP VAL TYR ASP GLU GLY ARG ASN SEQRES 25 A 366 ILE LEU GLU THR SER GLY ALA VAL ALA ILE ALA GLY ALA SEQRES 26 A 366 ALA ALA TYR CYS GLU PHE TYR LYS ILE LYS ASN GLU ASN SEQRES 27 A 366 ILE VAL ALA ILE ALA SER GLY ALA ASN MET ASP PHE SER SEQRES 28 A 366 LYS LEU HIS LYS VAL THR GLU LEU ALA GLY LEU GLY SER SEQRES 29 A 366 GLY LYS SEQRES 1 B 366 MET SER PRO ILE VAL SER VAL PRO ASP ILE THR ALA PRO SEQRES 2 B 366 VAL GLU ASN VAL PRO ALA ILE LEU PRO LYS VAL VAL PRO SEQRES 3 B 366 GLY GLU LEU ILE VAL ASN LYS PRO THR GLY GLY ASP SER SEQRES 4 B 366 ASP GLU LEU PHE GLN TYR LEU VAL ASP ILE LEU ALA SER SEQRES 5 B 366 PRO VAL TYR ASP VAL ALA ILE GLU SER PRO LEU GLU LEU SEQRES 6 B 366 ALA GLU LYS LEU SER ASP ARG LEU GLY VAL ASN PHE TYR SEQRES 7 B 366 ILE LYS ARG GLU ASP LYS GLN ARG VAL PHE SER PHE LLP SEQRES 8 B 366 LEU ARG GLY ALA TYR ASN MET MET SER ASN LEU SER ARG SEQRES 9 B 366 GLU GLU LEU ASP LYS GLY VAL ILE THR ALA SER ALA GLY SEQRES 10 B 366 ASN HIS ALA GLN GLY VAL ALA LEU ALA GLY GLN ARG LEU SEQRES 11 B 366 ASN CYS VAL ALA LYS ILE VAL MET PRO THR THR THR PRO SEQRES 12 B 366 GLN ILE LYS ILE ASP ALA VAL ARG ALA LEU GLY GLY ASP SEQRES 13 B 366 VAL VAL LEU TYR GLY LYS THR PHE ASP GLU ALA GLN THR SEQRES 14 B 366 HIS ALA LEU GLU LEU SER GLU LYS ASP GLY LEU LYS TYR SEQRES 15 B 366 ILE PRO PRO PHE ASP ASP PRO GLY VAL ILE LYS GLY GLN SEQRES 16 B 366 GLY THR ILE GLY THR GLU ILE ASN ARG GLN LEU LYS ASP SEQRES 17 B 366 ILE HIS ALA VAL PHE ILE PRO VAL GLY GLY GLY GLY LEU SEQRES 18 B 366 ILE ALA GLY VAL ALA THR PHE PHE LYS GLN ILE ALA PRO SEQRES 19 B 366 ASN THR LYS ILE ILE GLY VAL GLU PRO TYR GLY ALA ALA SEQRES 20 B 366 SER MET THR LEU SER LEU HIS GLU GLY HIS ARG VAL LYS SEQRES 21 B 366 LEU SER ASN VAL ASP THR PHE ALA ASP GLY VAL ALA VAL SEQRES 22 B 366 ALA LEU VAL GLY GLU TYR THR PHE ALA LYS CYS GLN GLU SEQRES 23 B 366 LEU ILE ASP GLY MET VAL LEU VAL ALA ASN ASP GLY ILE SEQRES 24 B 366 SER ALA ALA ILE LYS ASP VAL TYR ASP GLU GLY ARG ASN SEQRES 25 B 366 ILE LEU GLU THR SER GLY ALA VAL ALA ILE ALA GLY ALA SEQRES 26 B 366 ALA ALA TYR CYS GLU PHE TYR LYS ILE LYS ASN GLU ASN SEQRES 27 B 366 ILE VAL ALA ILE ALA SER GLY ALA ASN MET ASP PHE SER SEQRES 28 B 366 LYS LEU HIS LYS VAL THR GLU LEU ALA GLY LEU GLY SER SEQRES 29 B 366 GLY LYS MODRES 3IAU LLP A 91 LYS MODRES 3IAU LLP B 91 LYS HET LLP A 91 24 HET LLP B 91 24 HET SO4 A 367 5 HET 15P A 368 23 HET ACT A 369 4 HET ACT A 370 4 HET ACT B 367 4 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM SO4 SULFATE ION HETNAM 15P POLYETHYLENE GLYCOL (N=34) HETNAM ACT ACETATE ION HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN 15P PEG 1500 FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 SO4 O4 S 2- FORMUL 4 15P C69 H140 O35 FORMUL 5 ACT 3(C2 H3 O2 1-) FORMUL 8 HOH *654(H2 O) HELIX 1 1 VAL A 17 LEU A 21 5 5 HELIX 2 2 ASP A 38 SER A 52 1 15 HELIX 3 3 PRO A 53 VAL A 57 5 5 HELIX 4 4 ALA A 66 GLY A 74 1 9 HELIX 5 5 ASP A 83 GLN A 85 5 3 HELIX 6 6 LLP A 91 ASN A 101 1 11 HELIX 7 7 SER A 103 GLY A 110 1 8 HELIX 8 8 GLY A 117 LEU A 130 1 14 HELIX 9 9 PRO A 143 LEU A 153 1 11 HELIX 10 10 THR A 163 GLY A 179 1 17 HELIX 11 11 ASP A 188 LEU A 206 1 19 HELIX 12 12 GLY A 219 ALA A 233 1 15 HELIX 13 13 ALA A 247 GLY A 256 1 10 HELIX 14 14 ALA A 268 ALA A 272 5 5 HELIX 15 15 GLY A 277 ILE A 288 1 12 HELIX 16 16 ALA A 295 ARG A 311 1 17 HELIX 17 17 GLU A 315 TYR A 332 1 18 HELIX 18 18 ASP A 349 SER A 351 5 3 HELIX 19 19 LYS A 352 GLY A 361 1 10 HELIX 20 20 ASP B 38 SER B 52 1 15 HELIX 21 21 PRO B 53 VAL B 57 5 5 HELIX 22 22 ALA B 66 GLY B 74 1 9 HELIX 23 23 ASP B 83 GLN B 85 5 3 HELIX 24 24 LLP B 91 ASN B 101 1 11 HELIX 25 25 SER B 103 GLY B 110 1 8 HELIX 26 26 GLY B 117 LEU B 130 1 14 HELIX 27 27 PRO B 143 LEU B 153 1 11 HELIX 28 28 THR B 163 GLY B 179 1 17 HELIX 29 29 ASP B 188 LEU B 206 1 19 HELIX 30 30 GLY B 219 ALA B 233 1 15 HELIX 31 31 ALA B 247 GLY B 256 1 10 HELIX 32 32 ALA B 268 ALA B 272 5 5 HELIX 33 33 GLY B 277 ILE B 288 1 12 HELIX 34 34 ALA B 295 ARG B 311 1 17 HELIX 35 35 GLU B 315 TYR B 332 1 18 HELIX 36 36 SER B 351 GLY B 361 1 11 SHEET 1 A 2 PRO A 13 VAL A 14 0 SHEET 2 A 2 LYS A 260 LEU A 261 1 O LYS A 260 N VAL A 14 SHEET 1 B 7 ILE A 30 VAL A 31 0 SHEET 2 B 7 GLY A 290 VAL A 294 -1 O MET A 291 N ILE A 30 SHEET 3 B 7 LYS A 237 PRO A 243 1 N GLU A 242 O VAL A 292 SHEET 4 B 7 ILE A 209 PRO A 215 1 N VAL A 212 O LYS A 237 SHEET 5 B 7 ASN A 338 ALA A 343 1 O VAL A 340 N PHE A 213 SHEET 6 B 7 ASN A 76 ARG A 81 1 N TYR A 78 O ILE A 339 SHEET 7 B 7 LEU A 63 LEU A 65 -1 N GLU A 64 O ILE A 79 SHEET 1 C 4 ASP A 156 LEU A 159 0 SHEET 2 C 4 ALA A 134 MET A 138 1 N MET A 138 O VAL A 158 SHEET 3 C 4 VAL A 111 ALA A 114 1 N VAL A 111 O LYS A 135 SHEET 4 C 4 LYS A 181 TYR A 182 1 O LYS A 181 N ILE A 112 SHEET 1 D 7 ILE B 30 VAL B 31 0 SHEET 2 D 7 GLY B 290 VAL B 294 -1 O MET B 291 N ILE B 30 SHEET 3 D 7 LYS B 237 PRO B 243 1 N GLY B 240 O VAL B 292 SHEET 4 D 7 ALA B 211 PRO B 215 1 N VAL B 212 O LYS B 237 SHEET 5 D 7 ASN B 338 ALA B 343 1 O VAL B 340 N PHE B 213 SHEET 6 D 7 ASN B 76 ARG B 81 1 N TYR B 78 O ILE B 339 SHEET 7 D 7 LEU B 63 LEU B 65 -1 N GLU B 64 O ILE B 79 SHEET 1 E 4 ASP B 156 LEU B 159 0 SHEET 2 E 4 ALA B 134 MET B 138 1 N ILE B 136 O VAL B 158 SHEET 3 E 4 VAL B 111 ALA B 114 1 N VAL B 111 O LYS B 135 SHEET 4 E 4 LYS B 181 TYR B 182 1 O LYS B 181 N ILE B 112 LINK C PHE A 90 N LLP A 91 1555 1555 1.33 LINK C LLP A 91 N LEU A 92 1555 1555 1.33 LINK C PHE B 90 N LLP B 91 1555 1555 1.33 LINK C LLP B 91 N LEU B 92 1555 1555 1.33 SITE 1 AC1 10 LYS A 84 ASN A 312 HOH A 446 HOH A 447 SITE 2 AC1 10 HOH A 494 HOH A 714 LYS B 84 ASN B 312 SITE 3 AC1 10 HOH B 484 HOH B 505 SITE 1 AC2 6 HIS A 210 LYS A 237 TYR A 328 PHE A 331 SITE 2 AC2 6 TYR A 332 HOH A 428 SITE 1 AC3 5 SER A 115 ALA A 116 GLY A 117 PHE A 164 SITE 2 AC3 5 ACT A 370 SITE 1 AC4 5 LLP A 91 HIS A 119 PRO A 185 ACT A 369 SITE 2 AC4 5 HOH A 670 SITE 1 AC5 5 SER B 115 ALA B 116 PHE B 164 HOH B 415 SITE 2 AC5 5 HOH B 694 CRYST1 136.834 136.834 254.226 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007308 0.004219 0.000000 0.00000 SCALE2 0.000000 0.008439 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003934 0.00000