HEADER HORMONE 15-JUL-09 3IB5 TITLE CRYSTAL STRUCTURE OF SEX PHEROMONE PRECURSOR (YP_536235.1) FROM TITLE 2 LACTOBACILLUS SALIVARIUS SUBSP. SALIVARIUS UCC118 AT 1.35 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEX PHEROMONE PRECURSOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LIPOPROTEIN, PHEROMONE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS SALIVARIUS UCC118; SOURCE 3 ORGANISM_TAXID: 362948; SOURCE 4 GENE: LSL_1347, YP_536235.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_536235.1, SEX PHEROMONE PRECURSOR, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, LIPOPROTEIN, CAMS SEX PHEROMONE CAM373 PRECURSOR, HORMONE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 3IB5 1 REMARK SEQADV LINK REVDAT 3 24-JUL-19 3IB5 1 REMARK LINK REVDAT 2 01-NOV-17 3IB5 1 REMARK REVDAT 1 04-AUG-09 3IB5 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF SEX PHEROMONE PRECURSOR (YP_536235.1) JRNL TITL 2 FROM LACTOBACILLUS SALIVARIUS SUBSP. SALIVARIUS UCC118 AT JRNL TITL 3 1.35 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 81678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4095 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5623 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 282 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2648 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 525 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : 0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.712 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3166 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2164 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4347 ; 1.604 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5388 ; 0.915 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 454 ; 6.428 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;38.296 ;26.118 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 583 ;12.244 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;19.985 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 468 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3696 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 621 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1928 ; 1.641 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 792 ; 0.784 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3167 ; 2.568 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1238 ; 3.030 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1134 ; 4.433 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5330 ; 1.455 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 545 ; 8.425 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5226 ; 4.435 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. NITRATE(NO3), MAGNESIUM(MG), POLYETHYLENE REMARK 3 GLYCOL (PEG), AND ETHYLENE GLYCOL (EDO) MODELED ARE PRESENT IN REMARK 3 CRYSTALLIZATION OR CRYO CONDITIONS. 4. FOLLOWING REGIONS HAVE REMARK 3 POORLY DEFINED DENSITY: A44-50,A158-163,A179-190,A252-255 AND REMARK 3 A367-374. MODEL AT THESE REGIONS MAY NOT BE ACCURATE. REMARK 4 REMARK 4 3IB5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054192. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97858,0.97797 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81765 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 28.061 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.82900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M MGNO3, 20.0000% PEG-3350, NO REMARK 280 BUFFER PH 5.8, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.14750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.08750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.08750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.07375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.08750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.08750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.22125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.08750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.08750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.07375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.08750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.08750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 81.22125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.14750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 108.29500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLU A 35 REMARK 465 SER A 36 REMARK 465 SER A 37 REMARK 465 LYS A 38 REMARK 465 SER A 39 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 76 CG OD1 OD2 REMARK 470 GLN A 158 CG CD OE1 NE2 REMARK 470 ASN A 160 CG OD1 ND2 REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 470 GLN A 184 CG CD OE1 NE2 REMARK 470 ASN A 370 CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 144 C - N - CA ANGL. DEV. = -12.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 50 -65.22 -101.68 REMARK 500 ASN A 77 92.77 -162.34 REMARK 500 GLN A 184 -70.31 -62.06 REMARK 500 ASN A 260 33.38 -146.07 REMARK 500 ASN A 260 22.77 -140.86 REMARK 500 ASP A 308 -121.52 57.83 REMARK 500 ASP A 308 -115.32 47.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG A 6 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 60 OE1 REMARK 620 2 HOH A 541 O 89.1 REMARK 620 3 HOH A 558 O 86.0 91.1 REMARK 620 4 HOH A 564 O 98.8 90.9 174.9 REMARK 620 5 HOH A 598 O 169.6 89.1 83.8 91.5 REMARK 620 6 HOH A 604 O 92.4 177.8 90.7 87.2 89.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 386867 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 35-381) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3IB5 A 35 381 UNP Q1WSH7 Q1WSH7_LACS1 35 381 SEQADV 3IB5 GLY A 0 UNP Q1WSH7 EXPRESSION TAG SEQRES 1 A 348 GLY GLU SER SER LYS SER GLY TYR GLN THR THR GLY GLU SEQRES 2 A 348 ASN ASN SER SER ASP TYR GLN GLY ILE ILE GLU ASP GLY SEQRES 3 A 348 GLU TYR LYS THR SER LYS SER ARG GLY VAL GLY ILE SER SEQRES 4 A 348 GLN ASN SER ASP ASN LEU LEU ASN LEU LYS SER PHE GLU SEQRES 5 A 348 ALA GLY LEU THR THR ILE SER LYS ASP HIS PHE SER THR SEQRES 6 A 348 LYS SER TYR ILE PHE GLN GLU GLY GLN TYR LEU ASN LYS SEQRES 7 A 348 ALA THR ILE GLN ASP TRP LEU GLY ARG LYS SER SER SER SEQRES 8 A 348 ASN PRO GLU GLY LEU ASN PRO SER ASP ASN GLY LYS LYS SEQRES 9 A 348 GLU ALA ASN LYS ARG ASN PRO ILE TYR VAL GLN GLN ILE SEQRES 10 A 348 GLU GLU GLN ASP TYR MSE LYS GLN ASN ASN GLY LYS LEU SEQRES 11 A 348 GLU LEU ALA GLY MSE THR ILE GLY ILE GLY MSE ASN GLN SEQRES 12 A 348 LYS ASP TYR TYR GLN LYS GLU GLN TYR GLY ALA THR TYR SEQRES 13 A 348 SER THR THR ILE SER LYS GLU LYS ARG ILE GLU GLU GLY SEQRES 14 A 348 LYS ILE ALA ALA LYS LYS VAL LEU ALA ARG VAL ARG GLN SEQRES 15 A 348 LYS VAL GLY ASN ASN VAL PRO ILE VAL ILE ALA MSE PHE SEQRES 16 A 348 ALA GLN ALA PRO ASN ASP SER LEU VAL GLY GLY TYR PHE SEQRES 17 A 348 TYR SER TYR THR VAL SER LYS SER GLY THR ASP ILE GLY SEQRES 18 A 348 SER TRP THR GLU THR ASN ILE LYS SER TYR VAL LEU PRO SEQRES 19 A 348 ALA THR GLU ASP ASN LYS LEU PRO ASN ASP ASN ASP SER SEQRES 20 A 348 THR SER PHE ASP ASN PHE GLN LYS GLU VAL LYS ASN PHE SEQRES 21 A 348 PHE PRO ASN ILE SER ASN VAL THR GLY GLN GLY GLN TYR SEQRES 22 A 348 LYS ASP LYS THR LEU GLN GLY LEU HIS ILE THR ILE THR SEQRES 23 A 348 THR GLN PHE TYR SER GLU THR GLU ILE THR SER PHE THR SEQRES 24 A 348 GLN TYR VAL ALA GLN ALA ALA LYS SER TYR LEU PRO SER SEQRES 25 A 348 GLY ILE PRO VAL ASP ILE LYS ILE ASN GLY SER ASP GLY SEQRES 26 A 348 GLU THR GLN SER PHE VAL SER THR THR GLY GLY ASN GLY SEQRES 27 A 348 GLY TYR TYR THR HIS VAL PHE GLY SER TYR MODRES 3IB5 MSE A 156 MET SELENOMETHIONINE MODRES 3IB5 MSE A 168 MET SELENOMETHIONINE MODRES 3IB5 MSE A 174 MET SELENOMETHIONINE MODRES 3IB5 MSE A 227 MET SELENOMETHIONINE HET MSE A 156 8 HET MSE A 168 8 HET MSE A 174 8 HET MSE A 227 8 HET MG A 1 1 HET EDO A 2 4 HET EDO A 3 4 HET EDO A 4 8 HET NO3 A 5 4 HET PEG A 6 5 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM NO3 NITRATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 MG MG 2+ FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 NO3 N O3 1- FORMUL 7 PEG C4 H10 O3 FORMUL 8 HOH *525(H2 O) HELIX 1 1 GLY A 68 ASN A 74 1 7 HELIX 2 2 LEU A 78 PHE A 96 1 19 HELIX 3 3 ASN A 110 GLY A 119 1 10 HELIX 4 4 SER A 194 GLY A 218 1 25 HELIX 5 5 ASN A 276 ASN A 292 1 17 HELIX 6 6 SER A 324 LEU A 343 1 20 SHEET 1 A 3 TYR A 41 THR A 44 0 SHEET 2 A 3 GLY A 54 GLU A 57 -1 O ILE A 56 N GLN A 42 SHEET 3 A 3 GLU A 60 TYR A 61 -1 O GLU A 60 N GLU A 57 SHEET 1 B 6 ILE A 102 GLU A 105 0 SHEET 2 B 6 VAL A 147 ASN A 159 -1 O ASP A 154 N GLN A 104 SHEET 3 B 6 LYS A 162 MSE A 174 -1 O LYS A 162 N ASN A 159 SHEET 4 B 6 ILE A 223 ALA A 229 1 O PHE A 228 N MSE A 174 SHEET 5 B 6 TYR A 240 SER A 247 -1 O SER A 247 N ILE A 223 SHEET 6 B 6 THR A 257 GLU A 258 -1 O THR A 257 N TYR A 244 SHEET 1 C 2 LYS A 177 GLN A 181 0 SHEET 2 C 2 THR A 188 THR A 192 -1 O TYR A 189 N TYR A 180 SHEET 1 D 6 ILE A 261 LEU A 266 0 SHEET 2 D 6 ASN A 299 LYS A 307 -1 O TYR A 306 N LYS A 262 SHEET 3 D 6 THR A 310 THR A 319 -1 O GLN A 312 N GLN A 305 SHEET 4 D 6 VAL A 349 ASN A 354 1 O ASN A 354 N ILE A 318 SHEET 5 D 6 THR A 360 THR A 366 -1 O GLN A 361 N ILE A 353 SHEET 6 D 6 TYR A 374 VAL A 377 -1 O TYR A 374 N SER A 365 LINK C TYR A 155 N MSE A 156 1555 1555 1.34 LINK C MSE A 156 N LYS A 157 1555 1555 1.33 LINK C GLY A 167 N MSE A 168 1555 1555 1.32 LINK C MSE A 168 N THR A 169 1555 1555 1.33 LINK C GLY A 173 N MSE A 174 1555 1555 1.32 LINK C MSE A 174 N ASN A 175 1555 1555 1.33 LINK C ALA A 226 N MSE A 227 1555 1555 1.34 LINK C MSE A 227 N PHE A 228 1555 1555 1.33 LINK MG MG A 1 OE1 GLU A 60 1555 1555 2.05 LINK MG MG A 1 O HOH A 541 1555 1555 2.13 LINK MG MG A 1 O HOH A 558 1555 1555 2.17 LINK MG MG A 1 O HOH A 564 1555 1555 2.06 LINK MG MG A 1 O HOH A 598 1555 1555 2.07 LINK MG MG A 1 O HOH A 604 1555 1555 2.08 CISPEP 1 LEU A 266 PRO A 267 0 -5.33 SITE 1 AC1 6 GLU A 60 HOH A 541 HOH A 558 HOH A 564 SITE 2 AC1 6 HOH A 598 HOH A 604 SITE 1 AC2 7 ILE A 316 THR A 317 ASP A 350 PHE A 378 SITE 2 AC2 7 HOH A 652 HOH A 658 HOH A 695 SITE 1 AC3 5 THR A 245 VAL A 246 SER A 255 TRP A 256 SITE 2 AC3 5 THR A 257 SITE 1 AC4 7 HIS A 95 PHE A 96 VAL A 246 HOH A 400 SITE 2 AC4 7 HOH A 584 HOH A 776 HOH A 845 SITE 1 AC5 10 GLY A 135 LYS A 136 LYS A 137 ARG A 214 SITE 2 AC5 10 GLN A 215 GLY A 218 ASN A 219 HOH A 696 SITE 3 AC5 10 HOH A 737 HOH A 858 SITE 1 AC6 4 SER A 122 SER A 123 SER A 132 ASN A 159 CRYST1 82.175 82.175 108.295 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012169 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012169 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009234 0.00000