HEADER TRANSFERASE 16-JUL-09 3IBR TITLE CRYSTAL STRUCTURE OF P. AERUGINOSA BACTERIOPHYTOCHROME PHOTOSENSORY TITLE 2 CORE MODULE MUTANT Q188L IN THE MIXED PR/PFR STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOPHYTOCHROME; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-497; COMPND 5 SYNONYM: PHYTOCHROME-LIKE PROTEIN; COMPND 6 EC: 2.7.13.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 STRAIN: PA01; SOURCE 5 GENE: BPHP, PA4117; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21/DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET24 KEYWDS PHYTOCHROME, RED-LIGHT PHOTORECEPTOR, PHOTOCONVERSION, CHROMOPHORE, KEYWDS 2 ATP-BINDING, KINASE, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, KEYWDS 3 PHOTORECEPTOR PROTEIN, RECEPTOR, SENSORY TRANSDUCTION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.YANG,J.KUK,K.MOFFAT REVDAT 3 13-OCT-21 3IBR 1 REMARK SEQADV LINK REVDAT 2 12-JAN-11 3IBR 1 JRNL REVDAT 1 22-SEP-09 3IBR 0 JRNL AUTH X.YANG,J.KUK,K.MOFFAT JRNL TITL CONFORMATIONAL DIFFERENCES BETWEEN THE PFR AND PR STATES IN JRNL TITL 2 PSEUDOMONAS AERUGINOSA BACTERIOPHYTOCHROME. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 15639 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19720999 JRNL DOI 10.1073/PNAS.0902178106 REMARK 2 REMARK 2 RESOLUTION. 2.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.7 REMARK 3 NUMBER OF REFLECTIONS : 22136 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.307 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7476 - 5.9333 0.96 2984 181 0.2076 0.2740 REMARK 3 2 5.9333 - 4.7123 0.98 3044 164 0.2183 0.3247 REMARK 3 3 4.7123 - 4.1175 0.98 3036 168 0.2045 0.2676 REMARK 3 4 4.1175 - 3.7414 0.98 3033 155 0.2451 0.3004 REMARK 3 5 3.7414 - 3.4734 0.98 3045 174 0.2546 0.3488 REMARK 3 6 3.4734 - 3.2688 0.84 2619 130 0.2938 0.4123 REMARK 3 7 3.2688 - 3.1051 0.66 2007 104 0.3274 0.3517 REMARK 3 8 3.1051 - 2.9700 0.40 1240 52 0.3440 0.3744 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.29 REMARK 3 B_SOL : 72.07 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.520 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7720 REMARK 3 ANGLE : 1.336 10513 REMARK 3 CHIRALITY : 0.075 1127 REMARK 3 PLANARITY : 0.005 1372 REMARK 3 DIHEDRAL : 18.271 2811 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 29.4176 23.2441 17.2541 REMARK 3 T TENSOR REMARK 3 T11: 0.3380 T22: 0.2748 REMARK 3 T33: 0.4691 T12: -0.0751 REMARK 3 T13: -0.1462 T23: -0.2669 REMARK 3 L TENSOR REMARK 3 L11: 2.1586 L22: 0.0371 REMARK 3 L33: 0.9584 L12: 0.0964 REMARK 3 L13: -0.7198 L23: -0.3173 REMARK 3 S TENSOR REMARK 3 S11: -0.0769 S12: -0.3573 S13: 0.7545 REMARK 3 S21: 0.2415 S22: 0.1636 S23: -0.2064 REMARK 3 S31: -0.2560 S32: 0.3333 S33: -0.0923 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3IBR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054214. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23250 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.970 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 10MG/ML, 0.5% PEG4000 (W/V), REMARK 280 0.01M SODIUM ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 125.93333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.96667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 94.45000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 31.48333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 157.41667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 ILE A 4 REMARK 465 THR A 5 REMARK 465 GLY A 368 REMARK 465 ASP A 369 REMARK 465 PHE A 370 REMARK 465 PRO A 396 REMARK 465 GLN A 397 REMARK 465 PRO A 398 REMARK 465 SER A 399 REMARK 465 GLU A 400 REMARK 465 ASP A 401 REMARK 465 SER A 402 REMARK 465 PRO A 403 REMARK 465 ASP A 404 REMARK 465 GLY A 405 REMARK 465 HIS A 417 REMARK 465 ARG A 418 REMARK 465 GLN A 419 REMARK 465 GLU A 420 REMARK 465 SER A 421 REMARK 465 ARG A 434 REMARK 465 ILE A 435 REMARK 465 ARG A 436 REMARK 465 TRP A 437 REMARK 465 GLY A 438 REMARK 465 GLY A 439 REMARK 465 LYS A 440 REMARK 465 PRO A 441 REMARK 465 GLU A 442 REMARK 465 LYS A 443 REMARK 465 LEU A 444 REMARK 465 LEU A 445 REMARK 465 THR A 446 REMARK 465 ILE A 447 REMARK 465 ASN A 495 REMARK 465 HIS A 496 REMARK 465 ALA A 497 REMARK 465 LEU A 498 REMARK 465 GLU A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 465 HIS A 502 REMARK 465 HIS A 503 REMARK 465 HIS A 504 REMARK 465 HIS A 505 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 ILE B 4 REMARK 465 THR B 5 REMARK 465 GLY B 368 REMARK 465 ASP B 369 REMARK 465 PHE B 370 REMARK 465 PRO B 396 REMARK 465 GLN B 397 REMARK 465 PRO B 398 REMARK 465 SER B 399 REMARK 465 GLU B 400 REMARK 465 ASP B 401 REMARK 465 SER B 402 REMARK 465 PRO B 403 REMARK 465 ASP B 404 REMARK 465 GLY B 405 REMARK 465 HIS B 417 REMARK 465 ARG B 418 REMARK 465 GLN B 419 REMARK 465 GLU B 420 REMARK 465 SER B 421 REMARK 465 ARG B 434 REMARK 465 ILE B 435 REMARK 465 ARG B 436 REMARK 465 TRP B 437 REMARK 465 GLY B 438 REMARK 465 GLY B 439 REMARK 465 LYS B 440 REMARK 465 PRO B 441 REMARK 465 GLU B 442 REMARK 465 LYS B 443 REMARK 465 LEU B 444 REMARK 465 LEU B 445 REMARK 465 THR B 446 REMARK 465 ILE B 447 REMARK 465 ASN B 495 REMARK 465 HIS B 496 REMARK 465 ALA B 497 REMARK 465 LEU B 498 REMARK 465 GLU B 499 REMARK 465 HIS B 500 REMARK 465 HIS B 501 REMARK 465 HIS B 502 REMARK 465 HIS B 503 REMARK 465 HIS B 504 REMARK 465 HIS B 505 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 218 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 PRO B 449 C - N - CA ANGL. DEV. = 12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 84 159.32 174.11 REMARK 500 LYS A 103 -126.24 50.04 REMARK 500 ALA A 115 -171.70 -176.25 REMARK 500 HIS A 167 -17.76 -48.66 REMARK 500 ALA A 175 136.28 -174.44 REMARK 500 ASN A 230 -0.68 61.46 REMARK 500 ARG A 241 130.48 -37.23 REMARK 500 PRO A 342 2.16 -54.46 REMARK 500 LEU A 359 132.88 -171.06 REMARK 500 LEU A 381 30.08 -97.79 REMARK 500 ASN A 394 -5.92 81.41 REMARK 500 GLN B 61 -31.78 -39.01 REMARK 500 ASN B 84 174.62 178.93 REMARK 500 LYS B 103 -124.50 47.26 REMARK 500 ALA B 115 -169.02 -171.73 REMARK 500 TYR B 157 129.56 -38.58 REMARK 500 ASP B 169 18.53 52.70 REMARK 500 PRO B 218 161.20 -48.26 REMARK 500 ARG B 241 158.06 -49.64 REMARK 500 MSE B 260 147.88 -174.10 REMARK 500 MSE B 260 149.62 -174.10 REMARK 500 PRO B 342 -13.51 -49.41 REMARK 500 GLU B 430 72.44 -115.12 REMARK 500 VAL B 432 131.12 -37.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BLA A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BLA B 900 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3G9O RELATED DB: PDB REMARK 900 RELATED ID: 3G6O RELATED DB: PDB DBREF 3IBR A 1 497 UNP Q9HWR3 BPHY_PSEAE 1 497 DBREF 3IBR B 1 497 UNP Q9HWR3 BPHY_PSEAE 1 497 SEQADV 3IBR LEU A 188 UNP Q9HWR3 GLN 188 ENGINEERED MUTATION SEQADV 3IBR LEU A 498 UNP Q9HWR3 EXPRESSION TAG SEQADV 3IBR GLU A 499 UNP Q9HWR3 EXPRESSION TAG SEQADV 3IBR HIS A 500 UNP Q9HWR3 EXPRESSION TAG SEQADV 3IBR HIS A 501 UNP Q9HWR3 EXPRESSION TAG SEQADV 3IBR HIS A 502 UNP Q9HWR3 EXPRESSION TAG SEQADV 3IBR HIS A 503 UNP Q9HWR3 EXPRESSION TAG SEQADV 3IBR HIS A 504 UNP Q9HWR3 EXPRESSION TAG SEQADV 3IBR HIS A 505 UNP Q9HWR3 EXPRESSION TAG SEQADV 3IBR LEU B 188 UNP Q9HWR3 GLN 188 ENGINEERED MUTATION SEQADV 3IBR LEU B 498 UNP Q9HWR3 EXPRESSION TAG SEQADV 3IBR GLU B 499 UNP Q9HWR3 EXPRESSION TAG SEQADV 3IBR HIS B 500 UNP Q9HWR3 EXPRESSION TAG SEQADV 3IBR HIS B 501 UNP Q9HWR3 EXPRESSION TAG SEQADV 3IBR HIS B 502 UNP Q9HWR3 EXPRESSION TAG SEQADV 3IBR HIS B 503 UNP Q9HWR3 EXPRESSION TAG SEQADV 3IBR HIS B 504 UNP Q9HWR3 EXPRESSION TAG SEQADV 3IBR HIS B 505 UNP Q9HWR3 EXPRESSION TAG SEQRES 1 A 505 MSE THR SER ILE THR PRO VAL THR LEU ALA ASN CYS GLU SEQRES 2 A 505 ASP GLU PRO ILE HIS VAL PRO GLY ALA ILE GLN PRO HIS SEQRES 3 A 505 GLY ALA LEU VAL THR LEU ARG ALA ASP GLY MSE VAL LEU SEQRES 4 A 505 ALA ALA SER GLU ASN ILE GLN ALA LEU LEU GLY PHE VAL SEQRES 5 A 505 ALA SER PRO GLY SER TYR LEU THR GLN GLU GLN VAL GLY SEQRES 6 A 505 PRO GLU VAL LEU ARG MSE LEU GLU GLU GLY LEU THR GLY SEQRES 7 A 505 ASN GLY PRO TRP SER ASN SER VAL GLU THR ARG ILE GLY SEQRES 8 A 505 GLU HIS LEU PHE ASP VAL ILE GLY HIS SER TYR LYS GLU SEQRES 9 A 505 VAL PHE TYR LEU GLU PHE GLU ILE ARG THR ALA ASP THR SEQRES 10 A 505 LEU SER ILE THR SER PHE THR LEU ASN ALA GLN ARG ILE SEQRES 11 A 505 ILE ALA GLN VAL GLN LEU HIS ASN ASP THR ALA SER LEU SEQRES 12 A 505 LEU SER ASN VAL THR ASP GLU LEU ARG ARG MSE THR GLY SEQRES 13 A 505 TYR ASP ARG VAL MSE ALA TYR ARG PHE ARG HIS ASP ASP SEQRES 14 A 505 SER GLY GLU VAL VAL ALA GLU SER ARG ARG GLU ASP LEU SEQRES 15 A 505 GLU SER TYR LEU GLY LEU ARG TYR PRO ALA SER ASP ILE SEQRES 16 A 505 PRO ALA GLN ALA ARG ARG LEU TYR ILE GLN ASN PRO ILE SEQRES 17 A 505 ARG LEU ILE ALA ASP VAL ALA TYR THR PRO MSE ARG VAL SEQRES 18 A 505 PHE PRO ALA LEU ASN PRO GLU THR ASN GLU SER PHE ASP SEQRES 19 A 505 LEU SER TYR SER VAL LEU ARG SER VAL SER PRO ILE HIS SEQRES 20 A 505 CYS GLU TYR LEU THR ASN MSE GLY VAL ARG ALA SER MSE SEQRES 21 A 505 SER ILE SER ILE VAL VAL GLY GLY LYS LEU TRP GLY LEU SEQRES 22 A 505 PHE SER CYS HIS HIS MSE SER PRO LYS LEU ILE PRO TYR SEQRES 23 A 505 PRO VAL ARG MSE SER PHE GLN ILE PHE SER GLN VAL CYS SEQRES 24 A 505 SER ALA ILE VAL GLU ARG LEU GLU GLN GLY ARG ILE ALA SEQRES 25 A 505 GLU LEU LEU ARG VAL SER THR GLU ARG ARG LEU ALA LEU SEQRES 26 A 505 ALA ARG ARG ALA ARG ASP ALA ASP ASP LEU PHE GLY ALA SEQRES 27 A 505 LEU ALA HIS PRO ASP ASP GLY ILE ALA ALA LEU ILE PRO SEQRES 28 A 505 CYS ASP GLY ALA LEU VAL MSE LEU GLY GLY ARG THR LEU SEQRES 29 A 505 SER ILE ARG GLY ASP PHE GLU ARG GLN ALA GLY ASN VAL SEQRES 30 A 505 LEU GLN ARG LEU GLN ARG ASP PRO GLU ARG ASP ILE TYR SEQRES 31 A 505 HIS THR ASP ASN TRP PRO GLN PRO SER GLU ASP SER PRO SEQRES 32 A 505 ASP GLY GLY ASP CYS CYS GLY VAL LEU ALA ILE ARG PHE SEQRES 33 A 505 HIS ARG GLN GLU SER GLY TRP ILE PHE TRP PHE ARG HIS SEQRES 34 A 505 GLU GLU VAL HIS ARG ILE ARG TRP GLY GLY LYS PRO GLU SEQRES 35 A 505 LYS LEU LEU THR ILE GLY PRO SER GLY PRO ARG LEU THR SEQRES 36 A 505 PRO ARG GLY SER PHE GLU ALA TRP GLU GLU VAL VAL ARG SEQRES 37 A 505 GLY HIS SER THR PRO TRP SER GLU THR ASP LEU ALA ILE SEQRES 38 A 505 ALA GLU LYS LEU ARG LEU ASP LEU MSE GLU LEU CYS LEU SEQRES 39 A 505 ASN HIS ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 505 MSE THR SER ILE THR PRO VAL THR LEU ALA ASN CYS GLU SEQRES 2 B 505 ASP GLU PRO ILE HIS VAL PRO GLY ALA ILE GLN PRO HIS SEQRES 3 B 505 GLY ALA LEU VAL THR LEU ARG ALA ASP GLY MSE VAL LEU SEQRES 4 B 505 ALA ALA SER GLU ASN ILE GLN ALA LEU LEU GLY PHE VAL SEQRES 5 B 505 ALA SER PRO GLY SER TYR LEU THR GLN GLU GLN VAL GLY SEQRES 6 B 505 PRO GLU VAL LEU ARG MSE LEU GLU GLU GLY LEU THR GLY SEQRES 7 B 505 ASN GLY PRO TRP SER ASN SER VAL GLU THR ARG ILE GLY SEQRES 8 B 505 GLU HIS LEU PHE ASP VAL ILE GLY HIS SER TYR LYS GLU SEQRES 9 B 505 VAL PHE TYR LEU GLU PHE GLU ILE ARG THR ALA ASP THR SEQRES 10 B 505 LEU SER ILE THR SER PHE THR LEU ASN ALA GLN ARG ILE SEQRES 11 B 505 ILE ALA GLN VAL GLN LEU HIS ASN ASP THR ALA SER LEU SEQRES 12 B 505 LEU SER ASN VAL THR ASP GLU LEU ARG ARG MSE THR GLY SEQRES 13 B 505 TYR ASP ARG VAL MSE ALA TYR ARG PHE ARG HIS ASP ASP SEQRES 14 B 505 SER GLY GLU VAL VAL ALA GLU SER ARG ARG GLU ASP LEU SEQRES 15 B 505 GLU SER TYR LEU GLY LEU ARG TYR PRO ALA SER ASP ILE SEQRES 16 B 505 PRO ALA GLN ALA ARG ARG LEU TYR ILE GLN ASN PRO ILE SEQRES 17 B 505 ARG LEU ILE ALA ASP VAL ALA TYR THR PRO MSE ARG VAL SEQRES 18 B 505 PHE PRO ALA LEU ASN PRO GLU THR ASN GLU SER PHE ASP SEQRES 19 B 505 LEU SER TYR SER VAL LEU ARG SER VAL SER PRO ILE HIS SEQRES 20 B 505 CYS GLU TYR LEU THR ASN MSE GLY VAL ARG ALA SER MSE SEQRES 21 B 505 SER ILE SER ILE VAL VAL GLY GLY LYS LEU TRP GLY LEU SEQRES 22 B 505 PHE SER CYS HIS HIS MSE SER PRO LYS LEU ILE PRO TYR SEQRES 23 B 505 PRO VAL ARG MSE SER PHE GLN ILE PHE SER GLN VAL CYS SEQRES 24 B 505 SER ALA ILE VAL GLU ARG LEU GLU GLN GLY ARG ILE ALA SEQRES 25 B 505 GLU LEU LEU ARG VAL SER THR GLU ARG ARG LEU ALA LEU SEQRES 26 B 505 ALA ARG ARG ALA ARG ASP ALA ASP ASP LEU PHE GLY ALA SEQRES 27 B 505 LEU ALA HIS PRO ASP ASP GLY ILE ALA ALA LEU ILE PRO SEQRES 28 B 505 CYS ASP GLY ALA LEU VAL MSE LEU GLY GLY ARG THR LEU SEQRES 29 B 505 SER ILE ARG GLY ASP PHE GLU ARG GLN ALA GLY ASN VAL SEQRES 30 B 505 LEU GLN ARG LEU GLN ARG ASP PRO GLU ARG ASP ILE TYR SEQRES 31 B 505 HIS THR ASP ASN TRP PRO GLN PRO SER GLU ASP SER PRO SEQRES 32 B 505 ASP GLY GLY ASP CYS CYS GLY VAL LEU ALA ILE ARG PHE SEQRES 33 B 505 HIS ARG GLN GLU SER GLY TRP ILE PHE TRP PHE ARG HIS SEQRES 34 B 505 GLU GLU VAL HIS ARG ILE ARG TRP GLY GLY LYS PRO GLU SEQRES 35 B 505 LYS LEU LEU THR ILE GLY PRO SER GLY PRO ARG LEU THR SEQRES 36 B 505 PRO ARG GLY SER PHE GLU ALA TRP GLU GLU VAL VAL ARG SEQRES 37 B 505 GLY HIS SER THR PRO TRP SER GLU THR ASP LEU ALA ILE SEQRES 38 B 505 ALA GLU LYS LEU ARG LEU ASP LEU MSE GLU LEU CYS LEU SEQRES 39 B 505 ASN HIS ALA LEU GLU HIS HIS HIS HIS HIS HIS MODRES 3IBR MSE A 37 MET SELENOMETHIONINE MODRES 3IBR MSE A 71 MET SELENOMETHIONINE MODRES 3IBR MSE A 154 MET SELENOMETHIONINE MODRES 3IBR MSE A 161 MET SELENOMETHIONINE MODRES 3IBR MSE A 219 MET SELENOMETHIONINE MODRES 3IBR MSE A 254 MET SELENOMETHIONINE MODRES 3IBR MSE A 260 MET SELENOMETHIONINE MODRES 3IBR MSE A 279 MET SELENOMETHIONINE MODRES 3IBR MSE A 290 MET SELENOMETHIONINE MODRES 3IBR MSE A 358 MET SELENOMETHIONINE MODRES 3IBR MSE A 490 MET SELENOMETHIONINE MODRES 3IBR MSE B 37 MET SELENOMETHIONINE MODRES 3IBR MSE B 71 MET SELENOMETHIONINE MODRES 3IBR MSE B 154 MET SELENOMETHIONINE MODRES 3IBR MSE B 161 MET SELENOMETHIONINE MODRES 3IBR MSE B 219 MET SELENOMETHIONINE MODRES 3IBR MSE B 254 MET SELENOMETHIONINE MODRES 3IBR MSE B 260 MET SELENOMETHIONINE MODRES 3IBR MSE B 279 MET SELENOMETHIONINE MODRES 3IBR MSE B 290 MET SELENOMETHIONINE MODRES 3IBR MSE B 358 MET SELENOMETHIONINE MODRES 3IBR MSE B 490 MET SELENOMETHIONINE HET MSE A 37 8 HET MSE A 71 8 HET MSE A 154 8 HET MSE A 161 8 HET MSE A 219 8 HET MSE A 254 8 HET MSE A 260 8 HET MSE A 279 8 HET MSE A 290 8 HET MSE A 358 8 HET MSE A 490 8 HET MSE B 37 8 HET MSE B 71 8 HET MSE B 154 8 HET MSE B 161 8 HET MSE B 219 8 HET MSE B 254 8 HET MSE B 260 8 HET MSE B 279 8 HET MSE B 290 8 HET MSE B 358 8 HET MSE B 490 8 HET BLA A 900 86 HET BLA B 900 86 HETNAM MSE SELENOMETHIONINE HETNAM BLA BILIVERDINE IX ALPHA FORMUL 1 MSE 22(C5 H11 N O2 SE) FORMUL 3 BLA 2(C33 H34 N4 O6) FORMUL 5 HOH *2(H2 O) HELIX 1 1 ASN A 44 LEU A 49 1 6 HELIX 2 2 THR A 60 GLY A 78 1 19 HELIX 3 3 SER A 119 GLN A 135 1 17 HELIX 4 4 ASP A 139 GLY A 156 1 18 HELIX 5 5 PRO A 191 ILE A 195 5 5 HELIX 6 6 PRO A 196 ASN A 206 1 11 HELIX 7 7 SER A 244 MSE A 254 1 11 HELIX 8 8 PRO A 285 ASP A 331 1 47 HELIX 9 9 ASP A 334 LEU A 339 1 6 HELIX 10 10 GLY A 345 LEU A 349 5 5 HELIX 11 11 GLU A 371 LEU A 378 1 8 HELIX 12 12 THR A 455 ARG A 468 1 14 HELIX 13 13 SER A 475 MSE A 490 1 16 HELIX 14 14 ASN B 44 GLY B 50 1 7 HELIX 15 15 THR B 60 GLY B 65 1 6 HELIX 16 16 GLY B 65 THR B 77 1 13 HELIX 17 17 SER B 119 GLN B 135 1 17 HELIX 18 18 ASP B 139 GLY B 156 1 18 HELIX 19 19 PRO B 191 ILE B 195 5 5 HELIX 20 20 PRO B 196 ASN B 206 1 11 HELIX 21 21 SER B 244 MSE B 254 1 11 HELIX 22 22 PRO B 285 ASP B 331 1 47 HELIX 23 23 ASP B 334 ALA B 340 1 7 HELIX 24 24 GLY B 345 LEU B 349 5 5 HELIX 25 25 ARG B 372 LEU B 381 1 10 HELIX 26 26 GLN B 382 ASP B 384 5 3 HELIX 27 27 THR B 455 PHE B 460 1 6 HELIX 28 28 PHE B 460 ARG B 468 1 9 HELIX 29 29 SER B 475 GLU B 491 1 17 SHEET 1 A 7 ALA A 22 ILE A 23 0 SHEET 2 A 7 MSE A 219 PHE A 222 -1 O MSE A 219 N ILE A 23 SHEET 3 A 7 VAL A 38 SER A 42 -1 N ALA A 41 O PHE A 222 SHEET 4 A 7 LEU A 29 LEU A 32 -1 N LEU A 29 O SER A 42 SHEET 5 A 7 VAL A 105 ILE A 112 -1 O PHE A 106 N LEU A 32 SHEET 6 A 7 LEU A 94 TYR A 102 -1 N ASP A 96 O GLU A 111 SHEET 7 A 7 SER A 83 ARG A 89 -1 N ASN A 84 O GLY A 99 SHEET 1 B 6 ARG A 189 TYR A 190 0 SHEET 2 B 6 SER A 170 ARG A 178 -1 N GLY A 171 O TYR A 190 SHEET 3 B 6 ARG A 159 ARG A 166 -1 N ARG A 164 O GLU A 172 SHEET 4 B 6 LYS A 269 HIS A 278 -1 O LEU A 273 N TYR A 163 SHEET 5 B 6 ALA A 258 VAL A 266 -1 N MSE A 260 O CYS A 276 SHEET 6 B 6 ILE A 208 ILE A 211 -1 N ILE A 211 O SER A 259 SHEET 1 C 5 SER A 365 ILE A 366 0 SHEET 2 C 5 GLY A 354 MSE A 358 -1 N ALA A 355 O ILE A 366 SHEET 3 C 5 TRP A 423 ARG A 428 -1 O PHE A 427 N GLY A 354 SHEET 4 C 5 GLY A 410 ILE A 414 -1 N ILE A 414 O ILE A 424 SHEET 5 C 5 ILE A 389 THR A 392 -1 N TYR A 390 O ALA A 413 SHEET 1 D 7 ALA B 22 ILE B 23 0 SHEET 2 D 7 MSE B 219 PHE B 222 -1 O MSE B 219 N ILE B 23 SHEET 3 D 7 VAL B 38 SER B 42 -1 N ALA B 41 O PHE B 222 SHEET 4 D 7 GLY B 27 LEU B 32 -1 N LEU B 29 O SER B 42 SHEET 5 D 7 VAL B 105 ILE B 112 -1 O LEU B 108 N VAL B 30 SHEET 6 D 7 PHE B 95 TYR B 102 -1 N ASP B 96 O GLU B 111 SHEET 7 D 7 SER B 83 VAL B 86 -1 N ASN B 84 O GLY B 99 SHEET 1 E 6 ARG B 189 TYR B 190 0 SHEET 2 E 6 GLY B 171 ARG B 178 -1 N GLY B 171 O TYR B 190 SHEET 3 E 6 ARG B 159 PHE B 165 -1 N ARG B 164 O GLU B 172 SHEET 4 E 6 LYS B 269 HIS B 278 -1 O HIS B 277 N ARG B 159 SHEET 5 E 6 ALA B 258 VAL B 266 -1 N MSE B 260 O CYS B 276 SHEET 6 E 6 ILE B 208 ILE B 211 -1 N ILE B 211 O SER B 259 SHEET 1 F 5 ARG B 362 ILE B 366 0 SHEET 2 F 5 GLY B 354 LEU B 359 -1 N ALA B 355 O ILE B 366 SHEET 3 F 5 TRP B 423 ARG B 428 -1 O TRP B 423 N MSE B 358 SHEET 4 F 5 GLY B 410 ILE B 414 -1 N GLY B 410 O ARG B 428 SHEET 5 F 5 ILE B 389 THR B 392 -1 N TYR B 390 O ALA B 413 LINK C GLY A 36 N MSE A 37 1555 1555 1.33 LINK C MSE A 37 N VAL A 38 1555 1555 1.33 LINK C ARG A 70 N MSE A 71 1555 1555 1.33 LINK C MSE A 71 N LEU A 72 1555 1555 1.33 LINK C ARG A 153 N MSE A 154 1555 1555 1.32 LINK C MSE A 154 N THR A 155 1555 1555 1.33 LINK C VAL A 160 N MSE A 161 1555 1555 1.33 LINK C MSE A 161 N ALA A 162 1555 1555 1.33 LINK C PRO A 218 N MSE A 219 1555 1555 1.33 LINK C MSE A 219 N ARG A 220 1555 1555 1.33 LINK C ASN A 253 N MSE A 254 1555 1555 1.33 LINK C MSE A 254 N GLY A 255 1555 1555 1.33 LINK C SER A 259 N MSE A 260 1555 1555 1.33 LINK C MSE A 260 N SER A 261 1555 1555 1.33 LINK C HIS A 278 N MSE A 279 1555 1555 1.33 LINK C MSE A 279 N SER A 280 1555 1555 1.33 LINK C ARG A 289 N MSE A 290 1555 1555 1.33 LINK C MSE A 290 N SER A 291 1555 1555 1.33 LINK C VAL A 357 N MSE A 358 1555 1555 1.33 LINK C MSE A 358 N LEU A 359 1555 1555 1.33 LINK C LEU A 489 N MSE A 490 1555 1555 1.33 LINK C MSE A 490 N GLU A 491 1555 1555 1.33 LINK C GLY B 36 N MSE B 37 1555 1555 1.33 LINK C MSE B 37 N VAL B 38 1555 1555 1.33 LINK C ARG B 70 N MSE B 71 1555 1555 1.33 LINK C MSE B 71 N LEU B 72 1555 1555 1.33 LINK C ARG B 153 N MSE B 154 1555 1555 1.33 LINK C MSE B 154 N THR B 155 1555 1555 1.33 LINK C VAL B 160 N MSE B 161 1555 1555 1.33 LINK C MSE B 161 N ALA B 162 1555 1555 1.33 LINK C PRO B 218 N MSE B 219 1555 1555 1.33 LINK C MSE B 219 N ARG B 220 1555 1555 1.33 LINK C ASN B 253 N MSE B 254 1555 1555 1.33 LINK C MSE B 254 N GLY B 255 1555 1555 1.33 LINK C SER B 259 N MSE B 260 1555 1555 1.32 LINK C MSE B 260 N ASER B 261 1555 1555 1.33 LINK C MSE B 260 N BSER B 261 1555 1555 1.33 LINK C HIS B 278 N MSE B 279 1555 1555 1.33 LINK C MSE B 279 N SER B 280 1555 1555 1.33 LINK C ARG B 289 N MSE B 290 1555 1555 1.33 LINK C MSE B 290 N SER B 291 1555 1555 1.33 LINK C VAL B 357 N MSE B 358 1555 1555 1.33 LINK C MSE B 358 N LEU B 359 1555 1555 1.33 LINK C LEU B 489 N MSE B 490 1555 1555 1.33 LINK C MSE B 490 N GLU B 491 1555 1555 1.33 CISPEP 1 PHE A 222 PRO A 223 0 0.74 CISPEP 2 PHE B 222 PRO B 223 0 -6.17 CISPEP 3 ASP B 393 ASN B 394 0 17.52 SITE 1 AC1 24 CYS A 12 GLU A 15 ILE A 17 MSE A 161 SITE 2 AC1 24 TYR A 163 TYR A 190 SER A 193 ASP A 194 SITE 3 AC1 24 ILE A 195 PRO A 196 TYR A 203 ARG A 209 SITE 4 AC1 24 ILE A 211 ARG A 241 SER A 244 HIS A 247 SITE 5 AC1 24 TYR A 250 SER A 259 SER A 261 SER A 275 SITE 6 AC1 24 HIS A 277 PRO A 456 SER A 459 HOH A 506 SITE 1 AC2 24 CYS B 12 GLU B 15 MSE B 161 TYR B 163 SITE 2 AC2 24 LEU B 188 TYR B 190 SER B 193 ASP B 194 SITE 3 AC2 24 ILE B 195 PRO B 196 ALA B 199 TYR B 203 SITE 4 AC2 24 ARG B 209 ARG B 241 VAL B 243 SER B 244 SITE 5 AC2 24 HIS B 247 TYR B 250 SER B 259 SER B 261 SITE 6 AC2 24 SER B 275 HIS B 277 ARG B 453 HOH B 506 CRYST1 108.902 108.902 188.900 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009183 0.005302 0.000000 0.00000 SCALE2 0.000000 0.010603 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005294 0.00000