HEADER OXIDOREDUCTASE 16-JUL-09 3IBT TITLE STRUCTURE OF 1H-3-HYDROXY-4-OXOQUINOLINE 2,4-DIOXYGENASE (QDO) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1H-3-HYDROXY-4-OXOQUINOLINE 2,4-DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.13.11.47; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 GENE: QDO; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS QDO, DIOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.J.OAKLEY REVDAT 2 13-JUL-11 3IBT 1 VERSN REVDAT 1 02-FEB-10 3IBT 0 JRNL AUTH R.A.STEINER,H.J.JANSSEN,P.ROVERSI,A.J.OAKLEY,S.FETZNER JRNL TITL STRUCTURAL BASIS FOR COFACTOR-INDEPENDENT DIOXYGENATION OF JRNL TITL 2 N-HETEROAROMATIC COMPOUNDS AT THE ALPHA/BETA-HYDROLASE FOLD. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 657 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20080731 JRNL DOI 10.1073/PNAS.0909033107 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : -1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 11976 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 617 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 696 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.3750 REMARK 3 BIN FREE R VALUE SET COUNT : 31 REMARK 3 BIN FREE R VALUE : 0.3820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2138 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 69.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.64000 REMARK 3 B22 (A**2) : 3.64000 REMARK 3 B33 (A**2) : -5.46000 REMARK 3 B12 (A**2) : 1.82000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.515 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.318 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.378 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 44.982 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2208 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3009 ; 1.731 ; 1.917 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 262 ; 7.355 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;38.853 ;23.917 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 340 ;21.087 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;21.044 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 307 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1765 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1081 ; 0.259 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1477 ; 0.327 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 84 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.226 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.333 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1340 ; 0.811 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2122 ; 1.191 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 991 ; 1.866 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 887 ; 2.892 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 263 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1859 28.2735 59.9516 REMARK 3 T TENSOR REMARK 3 T11: -0.3175 T22: 0.0821 REMARK 3 T33: -0.1445 T12: -0.2517 REMARK 3 T13: 0.0949 T23: -0.2725 REMARK 3 L TENSOR REMARK 3 L11: 2.6800 L22: 3.1009 REMARK 3 L33: 6.6671 L12: -0.2956 REMARK 3 L13: -1.7753 L23: -0.8995 REMARK 3 S TENSOR REMARK 3 S11: -0.4069 S12: 0.8380 S13: -0.5275 REMARK 3 S21: 0.1518 S22: 0.1578 S23: 0.3171 REMARK 3 S31: 0.7349 S32: -1.3361 S33: 0.2491 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3IBT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUL-09. REMARK 100 THE RCSB ID CODE IS RCSB054216. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : BEAMLINE OPTICS REMARK 200 OPTICS : BEAMLINE OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22906 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.16800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.1-4.6M SODIUM FORMATE, PH 7.8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.24500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 112.49000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.36750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 140.61250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.12250 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.24500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 112.49000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 140.61250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 84.36750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 28.12250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 264 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 56 NE ARG A 56 CZ 0.080 REMARK 500 ARG A 56 CZ ARG A 56 NH1 0.119 REMARK 500 ASP A 76 CG ASP A 76 OD1 0.203 REMARK 500 ASP A 76 CG ASP A 76 OD2 0.139 REMARK 500 GLU A 176 CD GLU A 176 OE1 0.079 REMARK 500 GLU A 176 CD GLU A 176 OE2 0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 33 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 56 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 2 130.50 -32.19 REMARK 500 ASN A 7 -126.43 45.00 REMARK 500 THR A 9 -152.06 -146.63 REMARK 500 HIS A 20 56.75 -90.91 REMARK 500 ARG A 56 126.27 -27.06 REMARK 500 GLN A 62 77.52 22.25 REMARK 500 ASP A 64 -163.23 -77.95 REMARK 500 SER A 65 -179.80 137.71 REMARK 500 PHE A 80 -72.18 -85.15 REMARK 500 SER A 95 -123.08 52.86 REMARK 500 GLU A 155 -138.91 40.86 REMARK 500 THR A 156 32.78 -95.24 REMARK 500 ASN A 159 105.69 -59.59 REMARK 500 GLU A 169 -73.68 -82.29 REMARK 500 TYR A 212 144.26 -175.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 109 ALA A 110 149.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 295 DISTANCE = 6.73 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WJ3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COFACTOR-DEVOID 1-H-3-HYDROXY-4- REMARK 900 OXOQUINALDINE 2,4-DIOXYGENASE (HOD) FROM ARTHROBACTER REMARK 900 NITROGUAJACOLICUS RU61A REMARK 900 RELATED ID: 2WJ4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COFACTOR-DEVOID 1-H-3-HYDROXY-4- REMARK 900 OXOQUINALDINE 2,4-DIOXYGENASE (HOD) FROM ARTHROBACTER REMARK 900 NITROGUAJACOLICUS RU61A ANAEROBICALLY COMPLEXED WITH ITS REMARK 900 NATURAL SUBSTRATE 1-H-3-HYDROXY-4-OXOQUINALDINE REMARK 900 RELATED ID: 2WJ6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COFACTOR-DEVOID 1-H-3-HYDROXY-4- REMARK 900 OXOQUINALDINE 2,4-DIOXYGENASE (HOD) FROM ARTHROBACTER REMARK 900 NITROGUAJACOLICUS RU61A COMPLEXED WITH ITS NATURAL REMARK 900 SUBSTRATE N- ACETYLANTHRANILATE REMARK 900 RELATED ID: 2WM2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COFACTOR-DEVOID 1-H-3-HYDROXY-4- REMARK 900 OXOQUINALDINE 2,4-DIOXYGENASE (HOD) FROM ARTHROBACTER REMARK 900 NITROGUAJACOLICUS RU61A IN COMPLEX WITH CHLORIDE DBREF 3IBT A 1 264 UNP O33472 O33472_PSEPU 1 264 SEQADV 3IBT ILE A 118 UNP O33472 VAL 118 CONFLICT SEQADV 3IBT ASP A 200 UNP O33472 GLU 200 CONFLICT SEQADV 3IBT GLU A 226 UNP O33472 ASP 226 CONFLICT SEQRES 1 A 264 MSE GLN SER LEU ASN VAL ASN GLY THR LEU MSE THR TYR SEQRES 2 A 264 SER GLU SER GLY ASP PRO HIS ALA PRO THR LEU PHE LEU SEQRES 3 A 264 LEU SER GLY TRP CYS GLN ASP HIS ARG LEU PHE LYS ASN SEQRES 4 A 264 LEU ALA PRO LEU LEU ALA ARG ASP PHE HIS VAL ILE CYS SEQRES 5 A 264 PRO ASP TRP ARG GLY HIS ASP ALA LYS GLN THR ASP SER SEQRES 6 A 264 GLY ASP PHE ASP SER GLN THR LEU ALA GLN ASP LEU LEU SEQRES 7 A 264 ALA PHE ILE ASP ALA LYS GLY ILE ARG ASP PHE GLN MSE SEQRES 8 A 264 VAL SER THR SER HIS GLY CYS TRP VAL ASN ILE ASP VAL SEQRES 9 A 264 CYS GLU GLN LEU GLY ALA ALA ARG LEU PRO LYS THR ILE SEQRES 10 A 264 ILE ILE ASP TRP LEU LEU GLN PRO HIS PRO GLY PHE TRP SEQRES 11 A 264 GLN GLN LEU ALA GLU GLY GLN HIS PRO THR GLU TYR VAL SEQRES 12 A 264 ALA GLY ARG GLN SER PHE PHE ASP GLU TRP ALA GLU THR SEQRES 13 A 264 THR ASP ASN ALA ASP VAL LEU ASN HIS LEU ARG ASN GLU SEQRES 14 A 264 MSE PRO TRP PHE HIS GLY GLU MSE TRP GLN ARG ALA CYS SEQRES 15 A 264 ARG GLU ILE GLU ALA ASN TYR ARG THR TRP GLY SER PRO SEQRES 16 A 264 LEU ASP ARG MSE ASP SER LEU PRO GLN LYS PRO GLU ILE SEQRES 17 A 264 CYS HIS ILE TYR SER GLN PRO LEU SER GLN ASP TYR ARG SEQRES 18 A 264 GLN LEU GLN LEU GLU PHE ALA ALA GLY HIS SER TRP PHE SEQRES 19 A 264 HIS PRO ARG HIS ILE PRO GLY ARG THR HIS PHE PRO SER SEQRES 20 A 264 LEU GLU ASN PRO VAL ALA VAL ALA GLN ALA ILE ARG GLU SEQRES 21 A 264 PHE LEU GLN ALA MODRES 3IBT MSE A 1 MET SELENOMETHIONINE MODRES 3IBT MSE A 11 MET SELENOMETHIONINE MODRES 3IBT MSE A 91 MET SELENOMETHIONINE MODRES 3IBT MSE A 170 MET SELENOMETHIONINE MODRES 3IBT MSE A 177 MET SELENOMETHIONINE MODRES 3IBT MSE A 199 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 11 8 HET MSE A 91 8 HET MSE A 170 8 HET MSE A 177 8 HET MSE A 199 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 HOH *32(H2 O) HELIX 1 1 ASP A 33 LYS A 38 5 6 HELIX 2 2 ASN A 39 ALA A 45 1 7 HELIX 3 3 ASP A 69 LYS A 84 1 16 HELIX 4 4 HIS A 96 LEU A 108 1 13 HELIX 5 5 HIS A 126 GLY A 136 1 11 HELIX 6 6 GLU A 141 GLU A 155 1 15 HELIX 7 7 ASN A 159 GLU A 169 1 11 HELIX 8 8 MSE A 170 PHE A 173 5 4 HELIX 9 9 HIS A 174 GLY A 193 1 20 HELIX 10 10 SER A 194 SER A 201 1 8 HELIX 11 11 SER A 217 HIS A 231 1 15 HELIX 12 12 PHE A 245 ASN A 250 1 6 HELIX 13 13 ASN A 250 LEU A 262 1 13 SHEET 1 A 2 ASN A 5 VAL A 6 0 SHEET 2 A 2 THR A 9 LEU A 10 -1 O THR A 9 N VAL A 6 SHEET 1 B 7 TYR A 13 SER A 16 0 SHEET 2 B 7 HIS A 49 PRO A 53 -1 O CYS A 52 N SER A 14 SHEET 3 B 7 THR A 23 LEU A 27 1 N LEU A 26 O ILE A 51 SHEET 4 B 7 PHE A 89 THR A 94 1 O VAL A 92 N LEU A 27 SHEET 5 B 7 LYS A 115 ILE A 119 1 O ILE A 117 N SER A 93 SHEET 6 B 7 GLU A 207 TYR A 212 1 O ILE A 211 N ILE A 118 SHEET 7 B 7 PHE A 234 HIS A 238 1 O ARG A 237 N HIS A 210 LINK C MSE A 1 N GLN A 2 1555 1555 1.34 LINK C LEU A 10 N MSE A 11 1555 1555 1.33 LINK C MSE A 11 N THR A 12 1555 1555 1.37 LINK C GLN A 90 N MSE A 91 1555 1555 1.34 LINK C MSE A 91 N VAL A 92 1555 1555 1.32 LINK C GLU A 169 N MSE A 170 1555 1555 1.33 LINK C MSE A 170 N PRO A 171 1555 1555 1.35 LINK C GLU A 176 N MSE A 177 1555 1555 1.32 LINK C MSE A 177 N TRP A 178 1555 1555 1.33 LINK C ARG A 198 N MSE A 199 1555 1555 1.34 LINK C MSE A 199 N ASP A 200 1555 1555 1.32 CISPEP 1 GLN A 214 PRO A 215 0 -3.17 CRYST1 90.138 90.138 168.735 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011094 0.006405 0.000000 0.00000 SCALE2 0.000000 0.012810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005926 0.00000 HETATM 1 N MSE A 1 -5.647 17.752 67.860 1.00103.97 N HETATM 2 CA MSE A 1 -6.594 18.831 68.269 1.00104.14 C HETATM 3 C MSE A 1 -7.176 19.458 66.996 1.00102.66 C HETATM 4 O MSE A 1 -7.020 18.888 65.899 1.00102.53 O HETATM 5 CB MSE A 1 -5.886 19.876 69.143 1.00105.74 C HETATM 6 CG MSE A 1 -4.473 19.468 69.638 1.00109.33 C HETATM 7 SE MSE A 1 -2.993 19.471 68.253 1.00121.03 SE HETATM 8 CE MSE A 1 -2.761 17.509 68.002 1.00113.11 C