HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 17-JUL-09 3IBZ TITLE CRYSTAL STRUCTURE OF PUTATIVE TELLURIUM RESISTANT LIKE PROTEIN (TERD) TITLE 2 FROM STREPTOMYCES COELICOLOR A3(2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TELLURIUM RESISTANT LIKE PROTEIN TERD; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR A3(2); SOURCE 3 ORGANISM_TAXID: 100226; SOURCE 4 GENE: SCC8A.26C, SCO2368; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 GOLD MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS STRUCTURAL GENOMICS, STRESS PROTEIN, TELLURIUM RESISTANCE, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.KLIMECKA,M.CHRUSZCZ,M.CYMBOROWSKI,X.XU,H.CUI,A.JOACHIMIAK, AUTHOR 2 A.EDWARDS,A.SAVCHENKO,W.MINOR,MIDWEST CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 (MCSG) REVDAT 4 13-APR-22 3IBZ 1 AUTHOR JRNL REMARK LINK REVDAT 3 01-NOV-17 3IBZ 1 REMARK REVDAT 2 13-JUL-11 3IBZ 1 VERSN REVDAT 1 18-AUG-09 3IBZ 0 JRNL AUTH M.KLIMECKA,M.CHRUSZCZ,M.CYMBOROWSKI,X.XU,H.CUI,A.JOACHIMIAK, JRNL AUTH 2 A.EDWARDS,A.SAVCHENKO,W.MINOR JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE TELLURIUM RESISTANT LIKE JRNL TITL 2 PROTEIN (TERD) FROM STREPTOMYCES COELICOLOR A3(2) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 18123 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 929 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1238 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1349 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 126 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.80000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 2.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.864 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1436 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 928 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1952 ; 1.789 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2263 ; 2.349 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 186 ; 6.421 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 73 ;34.288 ;25.205 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 228 ;14.327 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;23.350 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 213 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1669 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 297 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 901 ; 1.219 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 382 ; 0.189 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1442 ; 2.191 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 535 ; 3.348 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 510 ; 5.398 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 23 REMARK 3 ORIGIN FOR THE GROUP (A): 7.1000 36.0900 -15.4230 REMARK 3 T TENSOR REMARK 3 T11: 0.8034 T22: 0.4361 REMARK 3 T33: 0.1210 T12: 0.1713 REMARK 3 T13: 0.0386 T23: 0.0626 REMARK 3 L TENSOR REMARK 3 L11: 0.4184 L22: 0.7305 REMARK 3 L33: 64.0494 L12: 0.2267 REMARK 3 L13: -4.6399 L23: 0.2313 REMARK 3 S TENSOR REMARK 3 S11: 0.1587 S12: 0.3001 S13: 0.0066 REMARK 3 S21: -0.1647 S22: 0.3994 S23: -0.0731 REMARK 3 S31: -2.7698 S32: -2.3591 S33: -0.5580 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 91 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3530 28.9520 9.1810 REMARK 3 T TENSOR REMARK 3 T11: 0.2800 T22: 0.1907 REMARK 3 T33: 0.0120 T12: 0.0143 REMARK 3 T13: -0.0152 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 0.9093 L22: 1.4913 REMARK 3 L33: 2.5802 L12: -0.4129 REMARK 3 L13: -0.6308 L23: 0.6261 REMARK 3 S TENSOR REMARK 3 S11: -0.0104 S12: -0.1125 S13: 0.0770 REMARK 3 S21: 0.1180 S22: 0.0489 S23: -0.0744 REMARK 3 S31: -0.2283 S32: 0.1092 S33: -0.0386 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 92 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): -0.2020 30.0890 3.0140 REMARK 3 T TENSOR REMARK 3 T11: 0.2592 T22: 0.2034 REMARK 3 T33: 0.0296 T12: 0.0474 REMARK 3 T13: -0.0228 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 1.6035 L22: 2.1405 REMARK 3 L33: 3.7507 L12: -0.6338 REMARK 3 L13: -0.9798 L23: 0.8166 REMARK 3 S TENSOR REMARK 3 S11: 0.0801 S12: 0.1079 S13: 0.0427 REMARK 3 S21: -0.1318 S22: -0.1359 S23: 0.1974 REMARK 3 S31: -0.3505 S32: -0.4013 S33: 0.0559 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 178 A 192 REMARK 3 ORIGIN FOR THE GROUP (A): 1.2340 16.0480 9.3570 REMARK 3 T TENSOR REMARK 3 T11: 0.2986 T22: 0.2079 REMARK 3 T33: 0.0089 T12: -0.0169 REMARK 3 T13: -0.0070 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 6.7796 L22: 9.4196 REMARK 3 L33: 7.8187 L12: -1.5450 REMARK 3 L13: -2.1983 L23: 5.1480 REMARK 3 S TENSOR REMARK 3 S11: -0.0668 S12: -0.2324 S13: -0.2025 REMARK 3 S21: 0.5346 S22: -0.0694 S23: 0.0358 REMARK 3 S31: 0.3184 S32: -0.0936 S33: 0.1361 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3IBZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054222. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI-111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18188 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 49.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55400 REMARK 200 R SYM FOR SHELL (I) : 0.55400 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, SHELXD, DM, RESOLVE, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH8.5, 12% GLYCEROL, 1.5M REMARK 280 NH4SO4, VAPOR DIFFUSION - SITTING DROP, TEMPERATURE 273K, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.41800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.85650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.72800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.85650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.41800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.72800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLY A 2 REMARK 465 VAL A 3 REMARK 465 SER A 4 REMARK 465 LEU A 5 REMARK 465 SER A 6 REMARK 465 LYS A 7 REMARK 465 GLY A 8 REMARK 465 GLY A 9 REMARK 465 ASN A 10 REMARK 465 VAL A 11 REMARK 465 SER A 12 REMARK 465 ALA A 17 REMARK 465 PRO A 18 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 103 N CA C O CB CG CD REMARK 480 GLU A 103 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 65 87.83 -155.62 REMARK 500 GLU A 137 9.58 59.56 REMARK 500 ILE A 172 -60.87 -121.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 193 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 29 O REMARK 620 2 GLY A 82 O 86.1 REMARK 620 3 GLY A 84 O 161.4 95.6 REMARK 620 4 ASP A 88 OD1 127.5 92.1 71.0 REMARK 620 5 ASP A 88 OD2 76.7 89.0 121.7 50.8 REMARK 620 6 HOH A 231 O 81.2 96.8 80.2 150.6 156.7 REMARK 620 7 HOH A 240 O 88.7 174.5 89.9 89.5 87.9 84.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 192 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 40 OD1 REMARK 620 2 LEU A 41 O 91.9 REMARK 620 3 ASP A 42 OD1 91.2 82.7 REMARK 620 4 ASP A 78 OD1 102.2 163.9 89.4 REMARK 620 5 ASN A 79 O 84.0 103.0 172.7 86.2 REMARK 620 6 GLU A 89 OE2 167.2 85.9 101.0 81.9 84.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 192 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 193 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 194 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 195 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 196 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC7348 RELATED DB: TARGETDB DBREF 3IBZ A 1 191 UNP Q9KY22 Q9KY22_STRCO 1 191 SEQRES 1 A 191 MSE GLY VAL SER LEU SER LYS GLY GLY ASN VAL SER LEU SEQRES 2 A 191 THR LYS GLU ALA PRO GLY LEU THR ALA VAL ILE VAL GLY SEQRES 3 A 191 LEU GLY TRP ASP ILE ARG THR THR THR GLY THR ASP PHE SEQRES 4 A 191 ASP LEU ASP ALA SER ALA LEU LEU LEU ASN SER GLY GLY SEQRES 5 A 191 LYS VAL ALA SER ASP ALA HIS PHE ILE PHE PHE ASN ASN SEQRES 6 A 191 LEU LYS SER PRO ASP GLY SER VAL GLU HIS THR GLY ASP SEQRES 7 A 191 ASN ILE THR GLY GLU GLY GLU GLY ASP ASP GLU GLN ILE SEQRES 8 A 191 LYS ILE ASN LEU ALA THR VAL PRO ALA ASP ILE GLU LYS SEQRES 9 A 191 ILE VAL PHE PRO VAL SER ILE TYR ASP ALA GLU ASN ARG SEQRES 10 A 191 GLN GLN SER PHE GLY GLN VAL ARG ASN ALA PHE ILE ARG SEQRES 11 A 191 VAL VAL ASN GLN ALA GLY GLU ALA GLU ILE ALA ARG TYR SEQRES 12 A 191 ASP LEU SER GLU ASP ALA SER THR GLU THR ALA MSE VAL SEQRES 13 A 191 PHE GLY GLU LEU TYR ARG HIS GLY ALA GLU TRP LYS PHE SEQRES 14 A 191 ARG ALA ILE GLY GLN GLY TYR ALA SER GLY LEU ARG GLY SEQRES 15 A 191 ILE ALA GLN ASP PHE GLY VAL ASN VAL MODRES 3IBZ MSE A 155 MET SELENOMETHIONINE HET MSE A 155 8 HET CA A 192 1 HET CA A 193 1 HET SO4 A 194 5 HET SO4 A 195 5 HET SO4 A 196 5 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION FORMUL 1 MSE C5 H11 N O2 SE FORMUL 2 CA 2(CA 2+) FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 HOH *126(H2 O) HELIX 1 1 SER A 56 ALA A 58 5 3 HELIX 2 2 ALA A 96 VAL A 98 5 3 HELIX 3 3 ASP A 113 GLN A 118 1 6 HELIX 4 4 SER A 120 VAL A 124 5 5 HELIX 5 5 LEU A 145 ALA A 149 1 5 HELIX 6 6 SER A 178 PHE A 187 1 10 SHEET 1 A 5 VAL A 73 HIS A 75 0 SHEET 2 A 5 GLU A 89 ASN A 94 -1 O LYS A 92 N GLU A 74 SHEET 3 A 5 ALA A 22 GLY A 28 -1 N LEU A 27 O GLU A 89 SHEET 4 A 5 PHE A 128 ASN A 133 -1 O ARG A 130 N GLY A 26 SHEET 5 A 5 ALA A 138 ASP A 144 -1 O ALA A 138 N ASN A 133 SHEET 1 B 4 LEU A 41 ALA A 43 0 SHEET 2 B 4 LYS A 104 ILE A 111 -1 O SER A 110 N ASP A 42 SHEET 3 B 4 ALA A 45 LEU A 48 -1 N LEU A 48 O LYS A 104 SHEET 4 B 4 PHE A 60 ILE A 61 -1 O ILE A 61 N ALA A 45 SHEET 1 C 4 LEU A 41 ALA A 43 0 SHEET 2 C 4 LYS A 104 ILE A 111 -1 O SER A 110 N ASP A 42 SHEET 3 C 4 ALA A 154 HIS A 163 -1 O PHE A 157 N PHE A 107 SHEET 4 C 4 GLU A 166 GLY A 175 -1 O ILE A 172 N PHE A 157 LINK C ALA A 154 N MSE A 155 1555 1555 1.32 LINK C MSE A 155 N VAL A 156 1555 1555 1.31 LINK O TRP A 29 CA CA A 193 1555 1555 2.15 LINK OD1 ASP A 40 CA CA A 192 1555 1555 2.36 LINK O LEU A 41 CA CA A 192 1555 1555 2.30 LINK OD1 ASP A 42 CA CA A 192 1555 1555 2.35 LINK OD1 ASP A 78 CA CA A 192 1555 1555 2.25 LINK O ASN A 79 CA CA A 192 1555 1555 2.41 LINK O GLY A 82 CA CA A 193 1555 1555 2.29 LINK O GLY A 84 CA CA A 193 1555 1555 2.29 LINK OD1 ASP A 88 CA CA A 193 1555 1555 2.74 LINK OD2 ASP A 88 CA CA A 193 1555 1555 2.42 LINK OE2 GLU A 89 CA CA A 192 1555 1555 2.35 LINK CA CA A 193 O HOH A 231 1555 1555 2.40 LINK CA CA A 193 O HOH A 240 1555 1555 2.48 SITE 1 AC1 6 ASP A 40 LEU A 41 ASP A 42 ASP A 78 SITE 2 AC1 6 ASN A 79 GLU A 89 SITE 1 AC2 6 TRP A 29 GLY A 82 GLY A 84 ASP A 88 SITE 2 AC2 6 HOH A 231 HOH A 240 SITE 1 AC3 4 GLY A 36 THR A 37 THR A 97 HOH A 316 SITE 1 AC4 10 ILE A 111 ASP A 113 ALA A 114 GLU A 115 SITE 2 AC4 10 GLY A 179 HOH A 216 HOH A 221 HOH A 238 SITE 3 AC4 10 HOH A 291 HOH A 309 SITE 1 AC5 4 LEU A 13 THR A 14 ARG A 181 HOH A 302 CRYST1 34.836 61.456 85.713 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028706 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016272 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011667 0.00000