HEADER HYDROLASE 17-JUL-09 3ICJ TITLE CRYSTAL STRUCTURE OF AN UNCHARACTERIZED METAL-DEPENDENT HYDROLASE FROM TITLE 2 PYROCOCCUS FURIOSUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED METAL-DEPENDENT HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 GENE: PF0846; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, AMIDOHYDROLASE, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,Y.PATSKOVSKY,J.FREEMAN,K.T.BAIN,S.HU,S.OZYURT, AUTHOR 2 S.WASSERMAN,J.M.SAUDER,F.M.RAUSHEL,S.K.BURLEY,S.C.ALMO,NEW YORK SGX AUTHOR 3 RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 10-FEB-21 3ICJ 1 AUTHOR JRNL REMARK SEQADV REVDAT 5 2 1 LINK REVDAT 4 21-NOV-18 3ICJ 1 AUTHOR REVDAT 3 01-NOV-17 3ICJ 1 REMARK REVDAT 2 13-JUL-11 3ICJ 1 VERSN REVDAT 1 28-JUL-09 3ICJ 0 SPRSDE 28-JUL-09 3ICJ 3ETK JRNL AUTH J.B.BONANNO,Y.PATSKOVSKY,J.FREEMAN,K.T.BAIN,S.HU,S.OZYURT, JRNL AUTH 2 S.WASSERMAN,J.M.SAUDER,F.M.RAUSHEL,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF AN UNCHARACTERIZED METAL-DEPENDENT JRNL TITL 2 HYDROLASE FROM PYROCOCCUS FURIOSUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0089 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 40027 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1286 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2796 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.5220 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.6150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3730 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 284 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 34.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.78000 REMARK 3 B22 (A**2) : 0.70000 REMARK 3 B33 (A**2) : -3.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.171 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.613 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3871 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5237 ; 1.319 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 489 ; 5.567 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;34.279 ;23.481 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 728 ;16.449 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;14.148 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 585 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2901 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2357 ; 3.088 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3810 ; 4.248 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1514 ; 6.020 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1415 ; 8.487 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 94 REMARK 3 RESIDUE RANGE : A 480 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): 1.6822 -19.1879 29.1347 REMARK 3 T TENSOR REMARK 3 T11: 0.0694 T22: 0.0356 REMARK 3 T33: 0.1374 T12: -0.0168 REMARK 3 T13: 0.0004 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 2.6625 L22: 4.7058 REMARK 3 L33: 3.6009 L12: 1.7885 REMARK 3 L13: -0.6678 L23: -2.0431 REMARK 3 S TENSOR REMARK 3 S11: 0.0642 S12: -0.0113 S13: -0.2229 REMARK 3 S21: 0.0575 S22: -0.0955 S23: 0.0652 REMARK 3 S31: 0.1931 S32: -0.1840 S33: 0.0313 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 213 REMARK 3 ORIGIN FOR THE GROUP (A): -9.9599 23.6050 8.5856 REMARK 3 T TENSOR REMARK 3 T11: 0.1475 T22: 0.1188 REMARK 3 T33: 0.1025 T12: 0.0382 REMARK 3 T13: -0.0125 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 3.6362 L22: 4.7702 REMARK 3 L33: 8.4533 L12: 0.4039 REMARK 3 L13: 2.1814 L23: -1.4078 REMARK 3 S TENSOR REMARK 3 S11: 0.2398 S12: 0.1002 S13: -0.1521 REMARK 3 S21: -0.1701 S22: -0.0878 S23: -0.0141 REMARK 3 S31: 0.5362 S32: -0.1376 S33: -0.1520 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 95 A 109 REMARK 3 RESIDUE RANGE : A 214 A 479 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8291 7.8866 21.6655 REMARK 3 T TENSOR REMARK 3 T11: 0.0253 T22: 0.0254 REMARK 3 T33: 0.0432 T12: -0.0140 REMARK 3 T13: -0.0239 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.8367 L22: 0.5571 REMARK 3 L33: 1.2611 L12: 0.0193 REMARK 3 L13: -0.6078 L23: 0.0281 REMARK 3 S TENSOR REMARK 3 S11: 0.0120 S12: 0.0477 S13: 0.0176 REMARK 3 S21: 0.0051 S22: -0.0022 S23: -0.0385 REMARK 3 S31: -0.0707 S32: 0.0404 S33: -0.0099 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ICJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054240. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42947 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 38.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : 0.09700 REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : 0.65000 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 200MM MAGNESIUM FORMATE, REMARK 280 10% GLYCEROL, PH 7.0, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.83000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.83000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.43450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.21900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.43450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.21900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 84.83000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.43450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.21900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 84.83000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.43450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.21900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 LEU A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 PRO A 5 REMARK 465 ILE A 6 REMARK 465 SER A 7 REMARK 465 ASN A 8 REMARK 465 PHE A 9 REMARK 465 PHE A 10 REMARK 465 THR A 11 REMARK 465 PHE A 12 REMARK 465 ASN A 13 REMARK 465 HIS A 14 REMARK 465 GLN A 15 REMARK 465 SER A 16 REMARK 465 THR A 17 REMARK 465 LEU A 18 REMARK 465 PHE A 19 REMARK 465 THR A 20 REMARK 465 LYS A 21 REMARK 465 VAL A 22 REMARK 465 LYS A 23 REMARK 465 ASN A 24 REMARK 465 PHE A 25 REMARK 465 MET A 26 REMARK 465 GLY A 27 REMARK 465 VAL A 28 REMARK 465 LYS A 29 REMARK 465 HIS A 30 REMARK 465 ILE A 31 REMARK 465 GLY A 32 REMARK 465 ASP A 33 REMARK 465 GLU A 502 REMARK 465 MET A 503 REMARK 465 LYS A 504 REMARK 465 GLY A 505 REMARK 465 ILE A 506 REMARK 465 ILE A 507 REMARK 465 THR A 508 REMARK 465 ILE A 509 REMARK 465 THR A 510 REMARK 465 THR A 511 REMARK 465 ASP A 512 REMARK 465 PRO A 513 REMARK 465 ASN A 514 REMARK 465 SER A 515 REMARK 465 SER A 516 REMARK 465 SER A 517 REMARK 465 VAL A 518 REMARK 465 ASP A 519 REMARK 465 LYS A 520 REMARK 465 LEU A 521 REMARK 465 ALA A 522 REMARK 465 ALA A 523 REMARK 465 ALA A 524 REMARK 465 LEU A 525 REMARK 465 GLU A 526 REMARK 465 HIS A 527 REMARK 465 HIS A 528 REMARK 465 HIS A 529 REMARK 465 HIS A 530 REMARK 465 HIS A 531 REMARK 465 HIS A 532 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 198 -116.87 43.66 REMARK 500 ASN A 315 85.61 -159.25 REMARK 500 HIS A 371 -64.28 82.11 REMARK 500 THR A 469 -85.65 -122.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 99 NE2 REMARK 620 2 HIS A 101 NE2 105.4 REMARK 620 3 KCX A 294 OQ1 94.7 89.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX A 294 OQ2 REMARK 620 2 HIS A 346 ND1 102.7 REMARK 620 3 HIS A 371 NE2 108.7 101.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ETK RELATED DB: PDB REMARK 900 RELATED ID: NYSGXRC-9564B RELATED DB: TARGETDB DBREF 3ICJ A 2 502 UNP Q8U2I8 Q8U2I8_PYRFU 2 502 SEQADV 3ICJ MET A -1 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ SER A 0 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ LEU A 1 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ MET A 503 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ LYS A 504 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ GLY A 505 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ ILE A 506 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ ILE A 507 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ THR A 508 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ ILE A 509 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ THR A 510 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ THR A 511 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ ASP A 512 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ PRO A 513 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ ASN A 514 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ SER A 515 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ SER A 516 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ SER A 517 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ VAL A 518 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ ASP A 519 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ LYS A 520 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ LEU A 521 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ ALA A 522 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ ALA A 523 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ ALA A 524 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ LEU A 525 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ GLU A 526 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ HIS A 527 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ HIS A 528 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ HIS A 529 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ HIS A 530 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ HIS A 531 UNP Q8U2I8 EXPRESSION TAG SEQADV 3ICJ HIS A 532 UNP Q8U2I8 EXPRESSION TAG SEQRES 1 A 534 MET SER LEU ALA SER LEU PRO ILE SER ASN PHE PHE THR SEQRES 2 A 534 PHE ASN HIS GLN SER THR LEU PHE THR LYS VAL LYS ASN SEQRES 3 A 534 PHE MET GLY VAL LYS HIS ILE GLY ASP CYS MET LYS ALA SEQRES 4 A 534 LEU ILE ASN GLY THR ILE TYR THR SER PHE SER PRO VAL SEQRES 5 A 534 LYS LYS VAL SER GLY LEU VAL ILE SER ASN GLU ARG VAL SEQRES 6 A 534 LEU TYR ALA GLY ASP SER SER THR ALA LEU ARG ILE ALA SEQRES 7 A 534 GLU LEU ALA GLY GLY GLU ILE ILE ASP LEU LYS GLY LYS SEQRES 8 A 534 PHE VAL MET PRO ALA PHE PHE ASP SER HIS LEU HIS LEU SEQRES 9 A 534 ASP GLU LEU GLY MET SER LEU GLU MET VAL ASP LEU ARG SEQRES 10 A 534 GLY VAL LYS SER MET GLU GLU LEU VAL GLU ARG VAL LYS SEQRES 11 A 534 LYS GLY ARG GLY ARG ILE ILE PHE GLY PHE GLY TRP ASP SEQRES 12 A 534 GLN ASP GLU LEU GLY ARG TRP PRO THR ARG GLU ASP LEU SEQRES 13 A 534 ASP VAL ILE ASP ARG PRO VAL PHE LEU TYR ARG ARG CYS SEQRES 14 A 534 PHE HIS VAL ALA VAL MET ASN SER LYS MET ILE ASP LEU SEQRES 15 A 534 LEU ASN LEU LYS PRO SER LYS ASP PHE ASP GLU SER THR SEQRES 16 A 534 GLY ILE VAL ARG GLU ARG ALA LEU GLU GLU SER ARG LYS SEQRES 17 A 534 ILE ILE ASN GLU LYS ILE LEU THR VAL LYS ASP TYR LYS SEQRES 18 A 534 HIS TYR ILE GLU SER ALA GLN GLU HIS LEU LEU SER LEU SEQRES 19 A 534 GLY VAL HIS SER VAL GLY PHE MET SER VAL GLY GLU LYS SEQRES 20 A 534 ALA LEU LYS ALA LEU PHE GLU LEU GLU ARG GLU GLY ARG SEQRES 21 A 534 LEU LYS MET ASN VAL PHE ALA TYR LEU SER PRO GLU LEU SEQRES 22 A 534 LEU ASP LYS LEU GLU GLU LEU ASN LEU GLY LYS PHE GLU SEQRES 23 A 534 GLY ARG ARG LEU ARG ILE TRP GLY VAL KCX LEU PHE VAL SEQRES 24 A 534 ASP GLY SER LEU GLY ALA ARG THR ALA LEU LEU SER GLU SEQRES 25 A 534 PRO TYR THR ASP ASN PRO THR THR SER GLY GLU LEU VAL SEQRES 26 A 534 MET ASN LYS ASP GLU ILE VAL GLU VAL ILE GLU ARG ALA SEQRES 27 A 534 LYS PRO LEU GLY LEU ASP VAL ALA VAL HIS ALA ILE GLY SEQRES 28 A 534 ASP LYS ALA VAL ASP VAL ALA LEU ASP ALA PHE GLU GLU SEQRES 29 A 534 ALA GLU PHE SER GLY ARG ILE GLU HIS ALA SER LEU VAL SEQRES 30 A 534 ARG ASP ASP GLN LEU GLU ARG ILE LYS GLU LEU LYS VAL SEQRES 31 A 534 ARG ILE SER ALA GLN PRO HIS PHE ILE VAL SER ASP TRP SEQRES 32 A 534 TRP ILE VAL ASN ARG VAL GLY GLU GLU ARG ALA LYS TRP SEQRES 33 A 534 ALA TYR ARG LEU LYS THR LEU SER SER ILE THR LYS LEU SEQRES 34 A 534 GLY PHE SER THR ASP SER PRO ILE GLU PRO ALA ASP PRO SEQRES 35 A 534 TRP VAL SER ILE ASP ALA ALA VAL ASN ARG TYR VAL VAL SEQRES 36 A 534 ASP PRO GLY GLU ARG VAL SER ARG GLU GLU ALA LEU HIS SEQRES 37 A 534 LEU TYR THR HIS GLY SER ALA GLN VAL THR LEU ALA GLU SEQRES 38 A 534 ASP LEU GLY LYS LEU GLU ARG GLY PHE ARG ALA GLU TYR SEQRES 39 A 534 ILE ILE LEU ASP ARG ASP PRO LEU LYS GLU MET LYS GLY SEQRES 40 A 534 ILE ILE THR ILE THR THR ASP PRO ASN SER SER SER VAL SEQRES 41 A 534 ASP LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 42 A 534 HIS MODRES 3ICJ KCX A 294 LYS LYSINE NZ-CARBOXYLIC ACID HET KCX A 294 12 HET ZN A 601 1 HET ZN A 602 1 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM ZN ZINC ION FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 ZN 2(ZN 2+) FORMUL 4 HOH *284(H2 O) HELIX 1 1 ASP A 68 GLY A 80 1 13 HELIX 2 2 HIS A 101 MET A 111 1 11 HELIX 3 3 SER A 119 LYS A 129 1 11 HELIX 4 4 ASP A 141 GLY A 146 1 6 HELIX 5 5 THR A 150 ASP A 155 1 6 HELIX 6 6 ASN A 174 ASN A 182 1 9 HELIX 7 7 GLU A 198 LYS A 211 1 14 HELIX 8 8 THR A 214 LEU A 232 1 19 HELIX 9 9 GLY A 243 GLU A 256 1 14 HELIX 10 10 LEU A 271 LEU A 278 1 8 HELIX 11 11 ASN A 325 LYS A 337 1 13 HELIX 12 12 GLY A 349 GLU A 364 1 16 HELIX 13 13 ARG A 376 ASP A 378 5 3 HELIX 14 14 GLN A 379 LYS A 387 1 9 HELIX 15 15 HIS A 395 ASP A 400 1 6 HELIX 16 16 TRP A 402 ALA A 412 1 11 HELIX 17 17 LYS A 413 ALA A 415 5 3 HELIX 18 18 ARG A 417 THR A 425 1 9 HELIX 19 19 ASP A 439 ARG A 450 1 12 HELIX 20 20 ASP A 454 ARG A 458 5 5 HELIX 21 21 SER A 460 TYR A 468 1 9 HELIX 22 22 THR A 469 THR A 476 1 8 SHEET 1 A 4 ARG A 62 GLY A 67 0 SHEET 2 A 4 GLY A 55 SER A 59 -1 N VAL A 57 O LEU A 64 SHEET 3 A 4 MET A 35 ILE A 39 -1 N LYS A 36 O ILE A 58 SHEET 4 A 4 GLU A 82 ASP A 85 1 O ILE A 84 N ALA A 37 SHEET 1 B 4 LYS A 51 VAL A 53 0 SHEET 2 B 4 THR A 42 SER A 46 -1 N ILE A 43 O VAL A 53 SHEET 3 B 4 PHE A 90 PRO A 93 1 O VAL A 91 N TYR A 44 SHEET 4 B 4 TYR A 492 LEU A 495 -1 O LEU A 495 N PHE A 90 SHEET 1 C 5 PHE A 95 LEU A 100 0 SHEET 2 C 5 VAL A 234 VAL A 242 1 O GLY A 238 N LEU A 100 SHEET 3 C 5 ASN A 262 LEU A 267 1 O TYR A 266 N PHE A 239 SHEET 4 C 5 LEU A 288 PHE A 296 1 O ARG A 289 N ALA A 265 SHEET 5 C 5 PHE A 283 GLU A 284 -1 N PHE A 283 O ILE A 290 SHEET 1 D 8 PHE A 95 LEU A 100 0 SHEET 2 D 8 VAL A 234 VAL A 242 1 O GLY A 238 N LEU A 100 SHEET 3 D 8 ASN A 262 LEU A 267 1 O TYR A 266 N PHE A 239 SHEET 4 D 8 LEU A 288 PHE A 296 1 O ARG A 289 N ALA A 265 SHEET 5 D 8 ASP A 342 ALA A 347 1 O ALA A 344 N VAL A 293 SHEET 6 D 8 ARG A 368 HIS A 371 1 O ARG A 368 N VAL A 345 SHEET 7 D 8 ARG A 389 ALA A 392 1 O SER A 391 N HIS A 371 SHEET 8 D 8 LEU A 427 PHE A 429 1 O GLY A 428 N ALA A 392 SHEET 1 E 6 VAL A 112 ASP A 113 0 SHEET 2 E 6 ILE A 135 TRP A 140 1 O PHE A 136 N VAL A 112 SHEET 3 E 6 VAL A 161 ARG A 165 1 O TYR A 164 N GLY A 137 SHEET 4 E 6 VAL A 170 MET A 173 -1 O VAL A 172 N LEU A 163 SHEET 5 E 6 ILE A 195 ARG A 197 -1 O VAL A 196 N ALA A 171 SHEET 6 E 6 PHE A 189 ASP A 190 -1 N ASP A 190 O ILE A 195 LINK C VAL A 293 N KCX A 294 1555 1555 1.33 LINK C KCX A 294 N LEU A 295 1555 1555 1.34 LINK NE2 HIS A 99 ZN ZN A 601 1555 1555 2.29 LINK NE2 HIS A 101 ZN ZN A 601 1555 1555 2.31 LINK OQ1 KCX A 294 ZN ZN A 601 1555 1555 2.36 LINK OQ2 KCX A 294 ZN ZN A 602 1555 1555 2.05 LINK ND1 HIS A 346 ZN ZN A 602 1555 1555 2.12 LINK NE2 HIS A 371 ZN ZN A 602 1555 1555 2.40 CISPEP 1 SER A 48 PRO A 49 0 -3.44 CISPEP 2 SER A 433 PRO A 434 0 11.10 SITE 1 AC1 5 HIS A 99 HIS A 101 KCX A 294 ASP A 432 SITE 2 AC1 5 ZN A 602 SITE 1 AC2 4 KCX A 294 HIS A 346 HIS A 371 ZN A 601 CRYST1 58.869 116.438 169.660 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016987 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008588 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005894 0.00000