HEADER LIGASE 18-JUL-09 3ICU TITLE PROTEASE-ASSOCIATED DOMAIN OF THE E3 LIGASE GRAIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RNF128; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 38-204; COMPND 5 SYNONYM: RING FINGER PROTEIN 128, GENE RELATED TO ENERGY IN COMPND 6 LYMPHOCYTES PROTEIN; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GRAIL, RNF128; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFHMSP-LIC-N KEYWDS E3 LIGASE, ENERGY, PA DOMAIN, TRANSMEMBRANE, PROTEIN TURNOVER, UBL KEYWDS 2 CONJUGATION PATHWAY, GLYCOPROTEIN, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 SGC, LIGASE, MEMBRANE, METAL-BINDING, ZINC-FINGER EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,L.YERMEKBAYEVA,A.SEITOVA,J.WEIGELT,C.BOUNTRA, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV,S.DHE-PAGANON,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 7 16-OCT-24 3ICU 1 REMARK REVDAT 6 06-SEP-23 3ICU 1 HETSYN REVDAT 5 29-JUL-20 3ICU 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE REVDAT 4 01-NOV-17 3ICU 1 REMARK REVDAT 3 13-JUL-11 3ICU 1 VERSN REVDAT 2 06-OCT-09 3ICU 1 REMARK REVDAT 1 29-SEP-09 3ICU 0 JRNL AUTH J.R.WALKER,L.YERMEKBAYEVA,A.SEITOVA,J.WEIGELT,C.BOUNTRA, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV,S.DHE-PAGANON JRNL TITL PA DOMAIN OF THE E3 LIGASE GRAIL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 927 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1239 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1286 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 142 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.75000 REMARK 3 B22 (A**2) : 0.75000 REMARK 3 B33 (A**2) : -1.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.150 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.377 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1372 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1884 ; 1.768 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 176 ; 6.195 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 54 ;38.432 ;24.259 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 198 ;12.762 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;15.775 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 211 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1064 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 864 ; 0.701 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1403 ; 1.287 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 508 ; 2.084 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 480 ; 3.365 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 204 REMARK 3 ORIGIN FOR THE GROUP (A): 32.9688 14.9519 16.7889 REMARK 3 T TENSOR REMARK 3 T11: 0.0194 T22: 0.0242 REMARK 3 T33: 0.0210 T12: -0.0058 REMARK 3 T13: -0.0064 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 2.5537 L22: 0.7617 REMARK 3 L33: 3.7254 L12: -0.9746 REMARK 3 L13: 2.2448 L23: -1.1661 REMARK 3 S TENSOR REMARK 3 S11: 0.0710 S12: -0.0418 S13: -0.0214 REMARK 3 S21: -0.0699 S22: -0.0398 S23: -0.0192 REMARK 3 S31: 0.1301 S32: 0.0561 S33: -0.0313 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3ICU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054251. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18428 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10100 REMARK 200 FOR THE DATA SET : 30.7647 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.74800 REMARK 200 FOR SHELL : 3.633 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2EK8, 1XF1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2 M NAH2PO4. PH 8.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290.9K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.26200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.89750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.89750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 102.39300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.89750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.89750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.13100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.89750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.89750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 102.39300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.89750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.89750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.13100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.26200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 PRO A 13 REMARK 465 GLU A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 ASP A 21 REMARK 465 TYR A 22 REMARK 465 ASP A 23 REMARK 465 ILE A 24 REMARK 465 PRO A 25 REMARK 465 THR A 26 REMARK 465 THR A 27 REMARK 465 GLU A 28 REMARK 465 ASN A 29 REMARK 465 LEU A 30 REMARK 465 TYR A 31 REMARK 465 PHE A 32 REMARK 465 GLN A 33 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 101 O5 NAG A 301 1.48 REMARK 500 CG ASN A 101 O5 NAG A 301 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 36 49.40 -104.55 REMARK 500 ARG A 152 -105.44 64.89 REMARK 500 HIS A 160 55.51 -157.04 REMARK 500 REMARK 500 REMARK: NULL DBREF 3ICU A 38 204 UNP Q8TEB7 RN128_HUMAN 38 204 SEQADV 3ICU ALA A 11 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU ALA A 12 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU PRO A 13 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU GLU A 14 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU HIS A 15 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU HIS A 16 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU HIS A 17 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU HIS A 18 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU HIS A 19 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU HIS A 20 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU ASP A 21 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU TYR A 22 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU ASP A 23 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU ILE A 24 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU PRO A 25 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU THR A 26 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU THR A 27 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU GLU A 28 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU ASN A 29 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU LEU A 30 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU TYR A 31 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU PHE A 32 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU GLN A 33 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU GLY A 34 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU ALA A 35 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU MET A 36 UNP Q8TEB7 EXPRESSION TAG SEQADV 3ICU ASP A 37 UNP Q8TEB7 EXPRESSION TAG SEQRES 1 A 194 ALA ALA PRO GLU HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 A 194 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 A 194 ASP GLY ALA GLU ALA VAL TRP THR ALA TYR LEU ASN VAL SEQRES 4 A 194 SER TRP ARG VAL PRO HIS THR GLY VAL ASN ARG THR VAL SEQRES 5 A 194 TRP GLU LEU SER GLU GLU GLY VAL TYR GLY GLN ASP SER SEQRES 6 A 194 PRO LEU GLU PRO VAL ALA GLY VAL LEU VAL PRO PRO ASP SEQRES 7 A 194 GLY PRO GLY ALA LEU ASN ALA CYS ASN PRO HIS THR ASN SEQRES 8 A 194 PHE THR VAL PRO THR VAL TRP GLY SER THR VAL GLN VAL SEQRES 9 A 194 SER TRP LEU ALA LEU ILE GLN ARG GLY GLY GLY CYS THR SEQRES 10 A 194 PHE ALA ASP LYS ILE HIS LEU ALA TYR GLU ARG GLY ALA SEQRES 11 A 194 SER GLY ALA VAL ILE PHE ASN PHE PRO GLY THR ARG ASN SEQRES 12 A 194 GLU VAL ILE PRO MET SER HIS PRO GLY ALA VAL ASP ILE SEQRES 13 A 194 VAL ALA ILE MET ILE GLY ASN LEU LYS GLY THR LYS ILE SEQRES 14 A 194 LEU GLN SER ILE GLN ARG GLY ILE GLN VAL THR MET VAL SEQRES 15 A 194 ILE GLU VAL GLY LYS LYS HIS GLY PRO TRP VAL ASN MODRES 3ICU ASN A 101 ASN GLYCOSYLATION SITE HET NAG A 301 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG C8 H15 N O6 FORMUL 3 HOH *142(H2 O) HELIX 1 1 THR A 127 ARG A 138 1 12 HELIX 2 2 GLY A 172 ARG A 185 1 14 SHEET 1 A 8 VAL A 42 ARG A 52 0 SHEET 2 A 8 THR A 61 TYR A 71 -1 O SER A 66 N LEU A 47 SHEET 3 A 8 VAL A 167 ILE A 171 -1 O MET A 170 N VAL A 70 SHEET 4 A 8 GLY A 142 PHE A 146 1 N ILE A 145 O ILE A 169 SHEET 5 A 8 TRP A 116 GLN A 121 1 N ALA A 118 O VAL A 144 SHEET 6 A 8 VAL A 80 VAL A 85 1 N VAL A 83 O LEU A 117 SHEET 7 A 8 VAL A 189 HIS A 199 -1 O ILE A 193 N VAL A 80 SHEET 8 A 8 VAL A 42 ARG A 52 -1 N SER A 50 O THR A 190 SSBOND 1 CYS A 96 CYS A 126 1555 1555 2.87 LINK ND2 ASN A 101 C1 NAG A 301 1555 1555 1.37 CISPEP 1 PRO A 90 GLY A 91 0 -13.40 CISPEP 2 GLY A 200 PRO A 201 0 -3.03 CRYST1 65.795 65.795 136.524 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015199 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015199 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007325 0.00000