HEADER TRANSFERASE 20-JUL-09 3ID8 TITLE TERNARY COMPLEX OF HUMAN PANCREATIC GLUCOKINASE CRYSTALLIZED WITH TITLE 2 ACTIVATOR, GLUCOSE AND AMP-PNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOKINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 12-465; COMPND 5 SYNONYM: HEXOKINASE TYPE IV, HK IV, HEXOKINASE-4, HK4, HEXOKINASE-D; COMPND 6 EC: 2.7.1.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS GLUCOKINASE, HEXOKINASE IV, ATP-BINDING, DIABETES MELLITUS, DISEASE KEYWDS 2 MUTATION, GLYCOLYSIS, KINASE, NUCLEOTIDE-BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.PETIT,L.GLUAIS,A.LAGARDE,J.A.BOUTIN,G.FERRY,L.VUILLARD REVDAT 5 01-NOV-23 3ID8 1 HETSYN REVDAT 4 29-JUL-20 3ID8 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 SITE REVDAT 3 25-APR-12 3ID8 1 JRNL REVDAT 2 09-NOV-11 3ID8 1 JRNL VERSN REVDAT 1 28-JUL-10 3ID8 0 JRNL AUTH P.PETIT,M.ANTOINE,G.FERRY,J.A.BOUTIN,A.LAGARDE,L.GLUAIS, JRNL AUTH 2 R.VINCENTELLI,L.VUILLARD JRNL TITL THE ACTIVE CONFORMATION OF HUMAN GLUCOKINASE IS NOT ALTERED JRNL TITL 2 BY ALLOSTERIC ACTIVATORS JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 67 929 2011 JRNL REFN ISSN 0907-4449 JRNL PMID 22101819 JRNL DOI 10.1107/S0907444911036729 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 18338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 966 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1321 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3535 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.92000 REMARK 3 B22 (A**2) : 1.03000 REMARK 3 B33 (A**2) : -1.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.521 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.308 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3684 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4962 ; 1.513 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 454 ; 5.864 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 177 ;37.087 ;23.898 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 675 ;18.651 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;19.341 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 541 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2761 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1690 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2443 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 172 ; 0.177 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.203 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.244 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.399 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2227 ; 0.612 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3575 ; 1.158 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1457 ; 1.625 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1384 ; 2.698 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ID8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054265. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18612 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 19.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : 0.39000 REMARK 200 FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1V4S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.50000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.40000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.40000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.50000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 GLU A 4 REMARK 465 GLU A 95 REMARK 465 GLU A 96 REMARK 465 GLY A 97 REMARK 465 LYS A 458 REMARK 465 LYS A 459 REMARK 465 ALA A 460 REMARK 465 CYS A 461 REMARK 465 MET A 462 REMARK 465 LEU A 463 REMARK 465 GLY A 464 REMARK 465 GLN A 465 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 64 -107.84 -34.25 REMARK 500 GLU A 67 -146.88 -96.41 REMARK 500 LYS A 136 -30.53 -37.75 REMARK 500 GLN A 138 83.75 25.94 REMARK 500 MET A 139 -0.80 -142.14 REMARK 500 HIS A 141 -44.27 -166.61 REMARK 500 ASP A 194 -98.57 5.20 REMARK 500 GLU A 196 99.82 71.34 REMARK 500 ILE A 293 -50.29 -123.24 REMARK 500 SER A 418 -0.89 -149.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 192 0.19 SIDE CHAIN REMARK 500 ARG A 394 0.24 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 700 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 205 OD1 REMARK 620 2 ANP A 600 O2G 78.1 REMARK 620 3 ANP A 600 O1B 138.6 63.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 800 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 238 O REMARK 620 2 VAL A 241 O 88.9 REMARK 620 3 VAL A 244 O 141.7 70.1 REMARK 620 4 GLY A 246 O 76.0 145.1 102.9 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1V4S RELATED DB: PDB REMARK 900 1V4S WAS OBTAINED WITH A DIFFERENT ISOFORM AT A LOWER PH IN A REMARK 900 DIFFERENT UNIT CELL REMARK 900 RELATED ID: 3F9M RELATED DB: PDB REMARK 900 HUMAN PANCREATIC GLUCOKINASE IN COMPLEX WITH GLUCOSE AND ACTIVATOR REMARK 900 RELATED ID: 3FGU RELATED DB: PDB REMARK 900 HUMAN PANCREATIC GLUCOKINASE IN COMPLEX WITH GLUCOSE AND AMP-PNP REMARK 900 RELATED ID: 3IDH RELATED DB: PDB REMARK 900 HUMAN PANCREATIC GLUCOKINASE IN COMPLEX WITH GLUCOSE DBREF 3ID8 A 12 465 UNP P35557 HXK4_HUMAN 12 465 SEQADV 3ID8 MET A -4 UNP P35557 EXPRESSION TAG SEQADV 3ID8 GLY A -3 UNP P35557 EXPRESSION TAG SEQADV 3ID8 HIS A -2 UNP P35557 EXPRESSION TAG SEQADV 3ID8 HIS A -1 UNP P35557 EXPRESSION TAG SEQADV 3ID8 HIS A 0 UNP P35557 EXPRESSION TAG SEQADV 3ID8 HIS A 1 UNP P35557 EXPRESSION TAG SEQADV 3ID8 HIS A 2 UNP P35557 EXPRESSION TAG SEQADV 3ID8 HIS A 3 UNP P35557 EXPRESSION TAG SEQADV 3ID8 GLU A 4 UNP P35557 EXPRESSION TAG SEQADV 3ID8 ASN A 5 UNP P35557 EXPRESSION TAG SEQADV 3ID8 LEU A 6 UNP P35557 EXPRESSION TAG SEQADV 3ID8 TYR A 7 UNP P35557 EXPRESSION TAG SEQADV 3ID8 PHE A 8 UNP P35557 EXPRESSION TAG SEQADV 3ID8 GLN A 9 UNP P35557 EXPRESSION TAG SEQADV 3ID8 GLY A 10 UNP P35557 EXPRESSION TAG SEQADV 3ID8 MET A 11 UNP P35557 EXPRESSION TAG SEQRES 1 A 470 MET GLY HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE SEQRES 2 A 470 GLN GLY MET LYS LYS GLU LYS VAL GLU GLN ILE LEU ALA SEQRES 3 A 470 GLU PHE GLN LEU GLN GLU GLU ASP LEU LYS LYS VAL MET SEQRES 4 A 470 ARG ARG MET GLN LYS GLU MET ASP ARG GLY LEU ARG LEU SEQRES 5 A 470 GLU THR HIS GLU GLU ALA SER VAL LYS MET LEU PRO THR SEQRES 6 A 470 TYR VAL ARG SER THR PRO GLU GLY SER GLU VAL GLY ASP SEQRES 7 A 470 PHE LEU SER LEU ASP LEU GLY GLY THR ASN PHE ARG VAL SEQRES 8 A 470 MET LEU VAL LYS VAL GLY GLU GLY GLU GLU GLY GLN TRP SEQRES 9 A 470 SER VAL LYS THR LYS HIS GLN MET TYR SER ILE PRO GLU SEQRES 10 A 470 ASP ALA MET THR GLY THR ALA GLU MET LEU PHE ASP TYR SEQRES 11 A 470 ILE SER GLU CYS ILE SER ASP PHE LEU ASP LYS HIS GLN SEQRES 12 A 470 MET LYS HIS LYS LYS LEU PRO LEU GLY PHE THR PHE SER SEQRES 13 A 470 PHE PRO VAL ARG HIS GLU ASP ILE ASP LYS GLY ILE LEU SEQRES 14 A 470 LEU ASN TRP THR LYS GLY PHE LYS ALA SER GLY ALA GLU SEQRES 15 A 470 GLY ASN ASN VAL VAL GLY LEU LEU ARG ASP ALA ILE LYS SEQRES 16 A 470 ARG ARG GLY ASP PHE GLU MET ASP VAL VAL ALA MET VAL SEQRES 17 A 470 ASN ASP THR VAL ALA THR MET ILE SER CYS TYR TYR GLU SEQRES 18 A 470 ASP HIS GLN CYS GLU VAL GLY MET ILE VAL GLY THR GLY SEQRES 19 A 470 CYS ASN ALA CYS TYR MET GLU GLU MET GLN ASN VAL GLU SEQRES 20 A 470 LEU VAL GLU GLY ASP GLU GLY ARG MET CYS VAL ASN THR SEQRES 21 A 470 GLU TRP GLY ALA PHE GLY ASP SER GLY GLU LEU ASP GLU SEQRES 22 A 470 PHE LEU LEU GLU TYR ASP ARG LEU VAL ASP GLU SER SER SEQRES 23 A 470 ALA ASN PRO GLY GLN GLN LEU TYR GLU LYS LEU ILE GLY SEQRES 24 A 470 GLY LYS TYR MET GLY GLU LEU VAL ARG LEU VAL LEU LEU SEQRES 25 A 470 ARG LEU VAL ASP GLU ASN LEU LEU PHE HIS GLY GLU ALA SEQRES 26 A 470 SER GLU GLN LEU ARG THR ARG GLY ALA PHE GLU THR ARG SEQRES 27 A 470 PHE VAL SER GLN VAL GLU SER ASP THR GLY ASP ARG LYS SEQRES 28 A 470 GLN ILE TYR ASN ILE LEU SER THR LEU GLY LEU ARG PRO SEQRES 29 A 470 SER THR THR ASP CYS ASP ILE VAL ARG ARG ALA CYS GLU SEQRES 30 A 470 SER VAL SER THR ARG ALA ALA HIS MET CYS SER ALA GLY SEQRES 31 A 470 LEU ALA GLY VAL ILE ASN ARG MET ARG GLU SER ARG SER SEQRES 32 A 470 GLU ASP VAL MET ARG ILE THR VAL GLY VAL ASP GLY SER SEQRES 33 A 470 VAL TYR LYS LEU HIS PRO SER PHE LYS GLU ARG PHE HIS SEQRES 34 A 470 ALA SER VAL ARG ARG LEU THR PRO SER CYS GLU ILE THR SEQRES 35 A 470 PHE ILE GLU SER GLU GLU GLY SER GLY ARG GLY ALA ALA SEQRES 36 A 470 LEU VAL SER ALA VAL ALA CYS LYS LYS ALA CYS MET LEU SEQRES 37 A 470 GLY GLN HET GLC A 500 12 HET MRK A 501 23 HET ANP A 600 31 HET MG A 700 1 HET K A 800 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM MRK 2-AMINO-4-FLUORO-5-[(1-METHYL-1H-IMIDAZOL-2-YL) HETNAM 2 MRK SULFANYL]-N-(1,3-THIAZOL-2-YL)BENZAMIDE HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 GLC C6 H12 O6 FORMUL 3 MRK C14 H12 F N5 O S2 FORMUL 4 ANP C10 H17 N6 O12 P3 FORMUL 5 MG MG 2+ FORMUL 6 K K 1+ FORMUL 7 HOH *125(H2 O) HELIX 1 1 LEU A 6 ALA A 21 1 16 HELIX 2 2 GLU A 22 GLN A 24 5 3 HELIX 3 3 GLN A 26 ARG A 46 1 21 HELIX 4 4 ARG A 46 GLU A 51 1 6 HELIX 5 5 PRO A 111 THR A 116 1 6 HELIX 6 6 THR A 118 HIS A 137 1 20 HELIX 7 7 ASN A 180 GLY A 193 1 14 HELIX 8 8 ASN A 204 TYR A 214 1 11 HELIX 9 9 GLN A 239 VAL A 241 5 3 HELIX 10 10 GLU A 256 PHE A 260 5 5 HELIX 11 11 LEU A 266 LEU A 270 5 5 HELIX 12 12 LEU A 271 SER A 280 1 10 HELIX 13 13 TYR A 289 GLY A 294 1 6 HELIX 14 14 GLY A 294 GLU A 312 1 19 HELIX 15 15 LEU A 315 GLU A 319 5 5 HELIX 16 16 GLU A 331 SER A 340 1 10 HELIX 17 17 ARG A 345 THR A 354 1 10 HELIX 18 18 SER A 360 SER A 396 1 37 HELIX 19 19 GLY A 410 HIS A 416 1 7 HELIX 20 20 SER A 418 THR A 431 1 14 HELIX 21 21 GLU A 443 CYS A 457 1 15 SHEET 1 A 6 LEU A 58 ARG A 63 0 SHEET 2 A 6 ARG A 250 ASN A 254 -1 O ASN A 254 N LEU A 58 SHEET 3 A 6 CYS A 230 GLU A 237 -1 N GLU A 236 O MET A 251 SHEET 4 A 6 CYS A 220 VAL A 226 -1 N GLY A 223 O CYS A 233 SHEET 5 A 6 MET A 402 ASP A 409 1 O GLY A 407 N MET A 224 SHEET 6 A 6 CYS A 434 GLU A 440 1 O ILE A 439 N VAL A 406 SHEET 1 B 5 TRP A 99 SER A 109 0 SHEET 2 B 5 ASN A 83 GLY A 92 -1 N VAL A 86 O GLN A 106 SHEET 3 B 5 GLY A 72 LEU A 79 -1 N SER A 76 O MET A 87 SHEET 4 B 5 PRO A 145 PHE A 150 1 O THR A 149 N LEU A 79 SHEET 5 B 5 ASP A 198 VAL A 203 1 O ASP A 198 N LEU A 146 SHEET 1 C 2 VAL A 154 ASP A 158 0 SHEET 2 C 2 LYS A 161 LEU A 164 -1 O LYS A 161 N GLU A 157 LINK OD1 ASP A 205 MG MG A 700 1555 1555 2.42 LINK O MET A 238 K K A 800 1555 1555 2.68 LINK O VAL A 241 K K A 800 1555 1555 2.90 LINK O VAL A 244 K K A 800 1555 1555 2.65 LINK O GLY A 246 K K A 800 1555 1555 2.49 LINK O2G ANP A 600 MG MG A 700 1555 1555 2.33 LINK O1B ANP A 600 MG MG A 700 1555 1555 2.89 CISPEP 1 ASP A 194 PHE A 195 0 9.70 CRYST1 67.000 82.600 86.800 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014925 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012107 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011521 0.00000