HEADER ISOMERASE 20-JUL-09 3IDD TITLE COFACTOR-INDEPENDENT PHOSPHOGLYCERATE MUTASE FROM TITLE 2 THERMOPLASMA ACIDOPHILUM DSM 1728 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT COMPND 3 PHOSPHOGLYCERATE MUTASE; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: PHOSPHOGLYCEROMUTASE, BPG-INDEPENDENT PGAM, APGAM, COMPND 6 COFACTOR-INDEPENDENT PHOSPHOGLYCERATE MUTASE; COMPND 7 EC: 5.4.2.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA ACIDOPHILUM; SOURCE 3 ORGANISM_TAXID: 2303; SOURCE 4 GENE: APGM, TA0413; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS PHOSPHOGLYCERATE MUTASE, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, GLYCOLYSIS, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.JOACHIMIAK,N.E.C.DUKE,N.MARSHALL,K.BUCK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 1 06-OCT-09 3IDD 0 JRNL AUTH A.JOACHIMIAK,N.E.C.DUKE,N.MARSHALL,K.BUCK JRNL TITL COFACTOR-INDEPENDENT PHOSPHOGLYCERATE MUTASE FROM JRNL TITL 2 THERMOPLASMA ACIDOPHILUM DSM 1728 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 18474 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.311 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 995 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1378 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.4690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5585 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.66000 REMARK 3 B22 (A**2) : -2.08000 REMARK 3 B33 (A**2) : 0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.492 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.379 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.386 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.895 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.833 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5689 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7688 ; 1.610 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 715 ; 6.774 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 257 ;34.569 ;23.268 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 977 ;23.704 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 56 ;20.855 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 848 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4334 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3597 ; 0.730 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5786 ; 1.430 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2092 ; 2.071 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1902 ; 3.610 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 3IDD COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-09. REMARK 100 THE RCSB ID CODE IS RCSB054270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924, 0.97948 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22991 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 74.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 74.330 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.59100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.20 M NACL, 0.10 M PHOSPHATE REMARK 280 CITRATE, PH 4.2, 10% PEG 3000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.30250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 68.37200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.30250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 68.37200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER PRESENT IN ASYMMETRIC UNIT OF CELL REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 MSE A 2 REMARK 465 GLY A 53 REMARK 465 ILE A 54 REMARK 465 ARG A 55 REMARK 465 CYS A 56 REMARK 465 GLY A 57 REMARK 465 GLY A 266 REMARK 465 ALA A 267 REMARK 465 THR A 268 REMARK 465 GLY A 269 REMARK 465 THR A 270 REMARK 465 VAL A 271 REMARK 465 GLY A 272 REMARK 465 ALA A 298 REMARK 465 THR A 299 REMARK 465 ASP A 300 REMARK 465 VAL A 301 REMARK 465 ALA A 302 REMARK 465 GLY A 303 REMARK 465 HIS A 304 REMARK 465 ASP A 305 REMARK 465 GLY A 306 REMARK 465 THR A 342 REMARK 465 PRO A 343 REMARK 465 CYS A 344 REMARK 465 SER A 345 REMARK 465 PHE A 346 REMARK 465 LYS A 347 REMARK 465 ASP A 348 REMARK 465 HIS A 349 REMARK 465 SER A 350 REMARK 465 GLY A 351 REMARK 465 ARG A 398 REMARK 465 SER A 399 REMARK 465 ASP A 400 REMARK 465 LYS A 401 REMARK 465 PHE A 402 REMARK 465 GLY A 403 REMARK 465 SER A 404 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 ILE B 50 REMARK 465 SER B 51 REMARK 465 PRO B 52 REMARK 465 GLY B 53 REMARK 465 ILE B 54 REMARK 465 ARG B 55 REMARK 465 CYS B 56 REMARK 465 GLY B 57 REMARK 465 SER B 58 REMARK 465 ASP B 59 REMARK 465 THR B 268 REMARK 465 GLY B 269 REMARK 465 THR B 270 REMARK 465 VAL B 271 REMARK 465 GLY B 272 REMARK 465 THR B 299 REMARK 465 ASP B 300 REMARK 465 VAL B 301 REMARK 465 ALA B 302 REMARK 465 GLY B 303 REMARK 465 HIS B 304 REMARK 465 ASP B 305 REMARK 465 GLY B 306 REMARK 465 HIS B 340 REMARK 465 SER B 341 REMARK 465 THR B 342 REMARK 465 PRO B 343 REMARK 465 CYS B 344 REMARK 465 SER B 345 REMARK 465 PHE B 346 REMARK 465 LYS B 347 REMARK 465 ASP B 348 REMARK 465 HIS B 349 REMARK 465 SER B 350 REMARK 465 GLY B 351 REMARK 465 ARG B 398 REMARK 465 SER B 399 REMARK 465 ASP B 400 REMARK 465 LYS B 401 REMARK 465 PHE B 402 REMARK 465 GLY B 403 REMARK 465 SER B 404 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MSE B 158 O PRO B 176 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 15 -156.84 -108.24 REMARK 500 ARG A 16 108.50 58.84 REMARK 500 ASP A 59 -7.66 -52.37 REMARK 500 LEU A 66 8.17 -68.84 REMARK 500 TYR A 73 31.01 39.24 REMARK 500 ASP A 105 79.95 34.37 REMARK 500 GLU A 143 -137.70 53.71 REMARK 500 HIS A 165 -9.55 78.50 REMARK 500 ASP A 178 136.22 170.72 REMARK 500 PRO A 179 -30.57 -31.26 REMARK 500 GLU A 207 3.72 -67.62 REMARK 500 PRO A 228 -168.20 -77.24 REMARK 500 ILE A 230 97.15 33.01 REMARK 500 SER A 232 160.73 -43.08 REMARK 500 SER A 247 109.71 97.54 REMARK 500 ASN A 274 48.05 -88.93 REMARK 500 SER A 288 -0.02 -140.25 REMARK 500 LEU A 395 -9.29 -154.73 REMARK 500 ASP B 15 175.83 64.64 REMARK 500 GLN B 22 50.88 71.60 REMARK 500 PHE B 31 99.02 -67.74 REMARK 500 LYS B 71 -24.53 96.90 REMARK 500 LEU B 85 54.29 -103.75 REMARK 500 GLU B 143 -121.89 49.16 REMARK 500 ASP B 154 10.17 58.51 REMARK 500 HIS B 165 -0.45 71.82 REMARK 500 THR B 177 -60.47 90.26 REMARK 500 ILE B 230 97.36 25.99 REMARK 500 SER B 232 156.58 -36.39 REMARK 500 SER B 247 119.33 136.44 REMARK 500 ASP B 263 -64.19 -93.84 REMARK 500 ILE B 296 -88.11 -77.61 REMARK 500 LYS B 297 -98.25 -139.73 REMARK 500 SER B 385 -42.90 -22.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 73 TYR A 74 148.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR A 60 24.2 L L OUTSIDE RANGE REMARK 500 TYR A 73 23.3 L L OUTSIDE RANGE REMARK 500 GLU A 280 24.1 L L OUTSIDE RANGE REMARK 500 HIS A 340 24.0 L L OUTSIDE RANGE REMARK 500 ILE B 296 24.3 L L OUTSIDE RANGE REMARK 500 LYS B 297 24.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC64091 RELATED DB: TARGETDB DBREF 3IDD A 1 404 UNP Q9HL27 APGM_THEAC 1 404 DBREF 3IDD B 1 404 UNP Q9HL27 APGM_THEAC 1 404 SEQADV 3IDD SER A -2 UNP Q9HL27 EXPRESSION TAG SEQADV 3IDD ASN A -1 UNP Q9HL27 EXPRESSION TAG SEQADV 3IDD ALA A 0 UNP Q9HL27 EXPRESSION TAG SEQADV 3IDD SER B -2 UNP Q9HL27 EXPRESSION TAG SEQADV 3IDD ASN B -1 UNP Q9HL27 EXPRESSION TAG SEQADV 3IDD ALA B 0 UNP Q9HL27 EXPRESSION TAG SEQRES 1 A 407 SER ASN ALA MSE MSE LYS SER ILE ILE LEU ILE VAL LEU SEQRES 2 A 407 ASP GLY LEU GLY ASP ARG PRO GLY SER ASP LEU GLN ASN SEQRES 3 A 407 ARG THR PRO LEU GLN ALA ALA PHE ARG PRO ASN LEU ASN SEQRES 4 A 407 TRP LEU ALA SER HIS GLY ILE ASN GLY ILE MSE HIS PRO SEQRES 5 A 407 ILE SER PRO GLY ILE ARG CYS GLY SER ASP THR SER HIS SEQRES 6 A 407 MSE SER LEU LEU GLY TYR ASP PRO LYS VAL TYR TYR PRO SEQRES 7 A 407 GLY ARG GLY PRO PHE GLU ALA LEU GLY LEU GLY MSE ASP SEQRES 8 A 407 ILE ARG PRO GLY ASP LEU ALA PHE ARG ALA ASN PHE ALA SEQRES 9 A 407 THR ASN ARG ASP GLY VAL ILE VAL ASP ARG ARG ALA GLY SEQRES 10 A 407 ARG GLU ASN LYS GLY ASN GLU GLU LEU ALA ASP ALA ILE SEQRES 11 A 407 SER LEU ASP MSE GLY GLU TYR SER PHE ARG VAL LYS SER SEQRES 12 A 407 GLY VAL GLU HIS ARG ALA ALA LEU VAL VAL SER GLY PRO SEQRES 13 A 407 ASP LEU SER ASP MSE ILE GLY ASP SER ASP PRO HIS ARG SEQRES 14 A 407 GLU GLY LEU PRO PRO GLU LYS ILE ARG PRO THR ASP PRO SEQRES 15 A 407 SER GLY ASP ARG THR ALA GLU VAL MSE ASN ALA TYR LEU SEQRES 16 A 407 GLU GLU ALA ARG ARG ILE LEU SER ASP HIS ARG VAL ASN SEQRES 17 A 407 LYS GLU ARG VAL LYS ASN GLY ARG LEU PRO GLY ASN GLU SEQRES 18 A 407 LEU LEU VAL ARG SER ALA GLY LYS VAL PRO ALA ILE PRO SEQRES 19 A 407 SER PHE THR GLU LYS ASN ARG MSE LYS GLY ALA CYS VAL SEQRES 20 A 407 VAL GLY SER PRO TRP LEU LYS GLY LEU CYS ARG LEU LEU SEQRES 21 A 407 ARG MSE ASP VAL PHE ASP VAL PRO GLY ALA THR GLY THR SEQRES 22 A 407 VAL GLY SER ASN TYR ARG GLY LYS ILE GLU LYS ALA VAL SEQRES 23 A 407 ASP LEU THR SER SER HIS ASP PHE VAL LEU VAL ASN ILE SEQRES 24 A 407 LYS ALA THR ASP VAL ALA GLY HIS ASP GLY ASN TYR PRO SEQRES 25 A 407 LEU LYS ARG ASP VAL ILE GLU ASP ILE ASP ARG ALA MSE SEQRES 26 A 407 GLU PRO LEU LYS SER ILE GLY ASP HIS ALA VAL ILE CYS SEQRES 27 A 407 VAL THR GLY ASP HIS SER THR PRO CYS SER PHE LYS ASP SEQRES 28 A 407 HIS SER GLY ASP PRO VAL PRO ILE VAL PHE TYR THR ASP SEQRES 29 A 407 GLY VAL MSE ASN ASP GLY VAL HIS LEU PHE ASP GLU LEU SEQRES 30 A 407 SER SER ALA SER GLY SER LEU ARG ILE THR SER TYR ASN SEQRES 31 A 407 VAL MSE ASP ILE LEU MSE GLN LEU ALA GLY ARG SER ASP SEQRES 32 A 407 LYS PHE GLY SER SEQRES 1 B 407 SER ASN ALA MSE MSE LYS SER ILE ILE LEU ILE VAL LEU SEQRES 2 B 407 ASP GLY LEU GLY ASP ARG PRO GLY SER ASP LEU GLN ASN SEQRES 3 B 407 ARG THR PRO LEU GLN ALA ALA PHE ARG PRO ASN LEU ASN SEQRES 4 B 407 TRP LEU ALA SER HIS GLY ILE ASN GLY ILE MSE HIS PRO SEQRES 5 B 407 ILE SER PRO GLY ILE ARG CYS GLY SER ASP THR SER HIS SEQRES 6 B 407 MSE SER LEU LEU GLY TYR ASP PRO LYS VAL TYR TYR PRO SEQRES 7 B 407 GLY ARG GLY PRO PHE GLU ALA LEU GLY LEU GLY MSE ASP SEQRES 8 B 407 ILE ARG PRO GLY ASP LEU ALA PHE ARG ALA ASN PHE ALA SEQRES 9 B 407 THR ASN ARG ASP GLY VAL ILE VAL ASP ARG ARG ALA GLY SEQRES 10 B 407 ARG GLU ASN LYS GLY ASN GLU GLU LEU ALA ASP ALA ILE SEQRES 11 B 407 SER LEU ASP MSE GLY GLU TYR SER PHE ARG VAL LYS SER SEQRES 12 B 407 GLY VAL GLU HIS ARG ALA ALA LEU VAL VAL SER GLY PRO SEQRES 13 B 407 ASP LEU SER ASP MSE ILE GLY ASP SER ASP PRO HIS ARG SEQRES 14 B 407 GLU GLY LEU PRO PRO GLU LYS ILE ARG PRO THR ASP PRO SEQRES 15 B 407 SER GLY ASP ARG THR ALA GLU VAL MSE ASN ALA TYR LEU SEQRES 16 B 407 GLU GLU ALA ARG ARG ILE LEU SER ASP HIS ARG VAL ASN SEQRES 17 B 407 LYS GLU ARG VAL LYS ASN GLY ARG LEU PRO GLY ASN GLU SEQRES 18 B 407 LEU LEU VAL ARG SER ALA GLY LYS VAL PRO ALA ILE PRO SEQRES 19 B 407 SER PHE THR GLU LYS ASN ARG MSE LYS GLY ALA CYS VAL SEQRES 20 B 407 VAL GLY SER PRO TRP LEU LYS GLY LEU CYS ARG LEU LEU SEQRES 21 B 407 ARG MSE ASP VAL PHE ASP VAL PRO GLY ALA THR GLY THR SEQRES 22 B 407 VAL GLY SER ASN TYR ARG GLY LYS ILE GLU LYS ALA VAL SEQRES 23 B 407 ASP LEU THR SER SER HIS ASP PHE VAL LEU VAL ASN ILE SEQRES 24 B 407 LYS ALA THR ASP VAL ALA GLY HIS ASP GLY ASN TYR PRO SEQRES 25 B 407 LEU LYS ARG ASP VAL ILE GLU ASP ILE ASP ARG ALA MSE SEQRES 26 B 407 GLU PRO LEU LYS SER ILE GLY ASP HIS ALA VAL ILE CYS SEQRES 27 B 407 VAL THR GLY ASP HIS SER THR PRO CYS SER PHE LYS ASP SEQRES 28 B 407 HIS SER GLY ASP PRO VAL PRO ILE VAL PHE TYR THR ASP SEQRES 29 B 407 GLY VAL MSE ASN ASP GLY VAL HIS LEU PHE ASP GLU LEU SEQRES 30 B 407 SER SER ALA SER GLY SER LEU ARG ILE THR SER TYR ASN SEQRES 31 B 407 VAL MSE ASP ILE LEU MSE GLN LEU ALA GLY ARG SER ASP SEQRES 32 B 407 LYS PHE GLY SER MODRES 3IDD MSE A 47 MET SELENOMETHIONINE MODRES 3IDD MSE A 63 MET SELENOMETHIONINE MODRES 3IDD MSE A 87 MET SELENOMETHIONINE MODRES 3IDD MSE A 131 MET SELENOMETHIONINE MODRES 3IDD MSE A 158 MET SELENOMETHIONINE MODRES 3IDD MSE A 188 MET SELENOMETHIONINE MODRES 3IDD MSE A 239 MET SELENOMETHIONINE MODRES 3IDD MSE A 259 MET SELENOMETHIONINE MODRES 3IDD MSE A 322 MET SELENOMETHIONINE MODRES 3IDD MSE A 364 MET SELENOMETHIONINE MODRES 3IDD MSE A 389 MET SELENOMETHIONINE MODRES 3IDD MSE A 393 MET SELENOMETHIONINE MODRES 3IDD MSE B 2 MET SELENOMETHIONINE MODRES 3IDD MSE B 47 MET SELENOMETHIONINE MODRES 3IDD MSE B 63 MET SELENOMETHIONINE MODRES 3IDD MSE B 87 MET SELENOMETHIONINE MODRES 3IDD MSE B 131 MET SELENOMETHIONINE MODRES 3IDD MSE B 158 MET SELENOMETHIONINE MODRES 3IDD MSE B 188 MET SELENOMETHIONINE MODRES 3IDD MSE B 239 MET SELENOMETHIONINE MODRES 3IDD MSE B 259 MET SELENOMETHIONINE MODRES 3IDD MSE B 322 MET SELENOMETHIONINE MODRES 3IDD MSE B 364 MET SELENOMETHIONINE MODRES 3IDD MSE B 389 MET SELENOMETHIONINE MODRES 3IDD MSE B 393 MET SELENOMETHIONINE HET MSE A 47 8 HET MSE A 63 8 HET MSE A 87 8 HET MSE A 131 8 HET MSE A 158 8 HET MSE A 188 8 HET MSE A 239 8 HET MSE A 259 8 HET MSE A 322 8 HET MSE A 364 8 HET MSE A 389 8 HET MSE A 393 8 HET MSE B 2 8 HET MSE B 47 8 HET MSE B 63 8 HET MSE B 87 8 HET MSE B 131 8 HET MSE B 158 8 HET MSE B 188 8 HET MSE B 239 8 HET MSE B 259 8 HET MSE B 322 8 HET MSE B 364 8 HET MSE B 389 8 HET MSE B 393 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 25(C5 H11 N O2 SE) FORMUL 3 HOH *84(H2 O) HELIX 1 1 GLY A 18 GLN A 22 5 5 HELIX 2 2 THR A 25 ALA A 30 1 6 HELIX 3 3 ARG A 32 HIS A 41 1 10 HELIX 4 4 SER A 61 LEU A 66 1 6 HELIX 5 5 GLY A 76 LEU A 85 1 10 HELIX 6 6 ARG A 112 GLU A 116 5 5 HELIX 7 7 GLY A 119 ILE A 127 1 9 HELIX 8 8 ASP A 178 SER A 180 5 3 HELIX 9 9 GLY A 181 HIS A 202 1 22 HELIX 10 10 HIS A 202 LYS A 210 1 9 HELIX 11 11 SER A 232 ARG A 238 1 7 HELIX 12 12 SER A 247 LEU A 257 1 11 HELIX 13 13 ASN A 274 LEU A 285 1 12 HELIX 14 14 THR A 286 SER A 288 5 3 HELIX 15 15 ASN A 307 MSE A 322 1 16 HELIX 16 16 GLU A 323 ILE A 328 5 6 HELIX 17 17 LEU A 374 GLY A 379 5 6 HELIX 18 18 ASN A 387 GLN A 394 1 8 HELIX 19 19 THR B 25 ALA B 30 1 6 HELIX 20 20 ARG B 32 HIS B 41 1 10 HELIX 21 21 THR B 60 LEU B 66 1 7 HELIX 22 22 GLY B 76 LEU B 85 1 10 HELIX 23 23 ARG B 112 GLU B 116 5 5 HELIX 24 24 GLY B 119 ILE B 127 1 9 HELIX 25 25 ASP B 178 SER B 180 5 3 HELIX 26 26 GLY B 181 HIS B 202 1 22 HELIX 27 27 HIS B 202 ASN B 211 1 10 HELIX 28 28 SER B 232 ARG B 238 1 7 HELIX 29 29 SER B 247 LEU B 257 1 11 HELIX 30 30 ASN B 274 LEU B 285 1 12 HELIX 31 31 ASN B 307 ALA B 321 1 15 HELIX 32 32 MSE B 322 ILE B 328 5 7 HELIX 33 33 LEU B 374 GLY B 379 5 6 HELIX 34 34 TYR B 386 GLY B 397 1 12 SHEET 1 A 8 ASP A 260 PHE A 262 0 SHEET 2 A 8 GLY A 241 VAL A 244 1 N CYS A 243 O PHE A 262 SHEET 3 A 8 PHE A 291 ILE A 296 1 O LEU A 293 N VAL A 244 SHEET 4 A 8 SER A 4 ASP A 11 1 N LEU A 7 O VAL A 294 SHEET 5 A 8 ALA A 332 ASP A 339 1 O THR A 337 N LEU A 10 SHEET 6 A 8 VAL A 354 TYR A 359 -1 O TYR A 359 N ILE A 334 SHEET 7 A 8 ILE A 43 HIS A 48 -1 N ILE A 43 O PHE A 358 SHEET 8 A 8 LEU A 381 THR A 384 1 O ILE A 383 N HIS A 48 SHEET 1 B 5 VAL A 107 ASP A 110 0 SHEET 2 B 5 LEU A 94 ARG A 104 -1 N THR A 102 O ASP A 110 SHEET 3 B 5 ARG A 145 SER A 151 -1 O VAL A 150 N LEU A 94 SHEET 4 B 5 SER A 135 SER A 140 -1 N ARG A 137 O VAL A 149 SHEET 5 B 5 LEU A 129 ASP A 130 -1 N LEU A 129 O PHE A 136 SHEET 1 C 3 VAL A 107 ASP A 110 0 SHEET 2 C 3 LEU A 94 ARG A 104 -1 N THR A 102 O ASP A 110 SHEET 3 C 3 GLU A 218 LYS A 226 -1 O LEU A 220 N ASN A 99 SHEET 1 D 8 ASP B 260 PHE B 262 0 SHEET 2 D 8 GLY B 241 VAL B 244 1 N CYS B 243 O ASP B 260 SHEET 3 D 8 PHE B 291 ASN B 295 1 O LEU B 293 N VAL B 244 SHEET 4 D 8 SER B 4 LEU B 10 1 N ILE B 5 O VAL B 292 SHEET 5 D 8 ALA B 332 GLY B 338 1 O THR B 337 N LEU B 10 SHEET 6 D 8 VAL B 354 TYR B 359 -1 O TYR B 359 N ILE B 334 SHEET 7 D 8 ILE B 43 HIS B 48 -1 N MSE B 47 O VAL B 354 SHEET 8 D 8 LEU B 381 THR B 384 1 O LEU B 381 N ASN B 44 SHEET 1 E 5 VAL B 107 ASP B 110 0 SHEET 2 E 5 LEU B 94 ARG B 104 -1 N THR B 102 O ASP B 110 SHEET 3 E 5 ARG B 145 SER B 151 -1 O LEU B 148 N PHE B 96 SHEET 4 E 5 TYR B 134 SER B 140 -1 N LYS B 139 O ALA B 147 SHEET 5 E 5 LEU B 129 MSE B 131 -1 N LEU B 129 O PHE B 136 SHEET 1 F 3 VAL B 107 ASP B 110 0 SHEET 2 F 3 LEU B 94 ARG B 104 -1 N THR B 102 O ASP B 110 SHEET 3 F 3 GLU B 218 LYS B 226 -1 O GLY B 225 N ALA B 95 SSBOND 1 CYS A 243 CYS A 254 1555 1555 2.06 SSBOND 2 CYS B 243 CYS B 254 1555 1555 2.05 LINK C ILE A 46 N MSE A 47 1555 1555 1.33 LINK C MSE A 47 N HIS A 48 1555 1555 1.33 LINK C HIS A 62 N MSE A 63 1555 1555 1.32 LINK C MSE A 63 N SER A 64 1555 1555 1.33 LINK C GLY A 86 N MSE A 87 1555 1555 1.33 LINK C MSE A 87 N ASP A 88 1555 1555 1.33 LINK C ASP A 130 N MSE A 131 1555 1555 1.33 LINK C MSE A 131 N GLY A 132 1555 1555 1.34 LINK C ASP A 157 N MSE A 158 1555 1555 1.33 LINK C MSE A 158 N ILE A 159 1555 1555 1.34 LINK C VAL A 187 N MSE A 188 1555 1555 1.34 LINK C MSE A 188 N ASN A 189 1555 1555 1.33 LINK C ARG A 238 N MSE A 239 1555 1555 1.33 LINK C MSE A 239 N LYS A 240 1555 1555 1.32 LINK C ARG A 258 N MSE A 259 1555 1555 1.33 LINK C MSE A 259 N ASP A 260 1555 1555 1.32 LINK C ALA A 321 N MSE A 322 1555 1555 1.32 LINK C MSE A 322 N GLU A 323 1555 1555 1.33 LINK C VAL A 363 N MSE A 364 1555 1555 1.35 LINK C MSE A 364 N ASN A 365 1555 1555 1.34 LINK C VAL A 388 N MSE A 389 1555 1555 1.34 LINK C MSE A 389 N ASP A 390 1555 1555 1.33 LINK C LEU A 392 N MSE A 393 1555 1555 1.33 LINK C MSE A 393 N GLN A 394 1555 1555 1.33 LINK C MSE B 2 N LYS B 3 1555 1555 1.33 LINK C ILE B 46 N MSE B 47 1555 1555 1.32 LINK C MSE B 47 N HIS B 48 1555 1555 1.34 LINK C HIS B 62 N MSE B 63 1555 1555 1.33 LINK C MSE B 63 N SER B 64 1555 1555 1.34 LINK C GLY B 86 N MSE B 87 1555 1555 1.33 LINK C MSE B 87 N ASP B 88 1555 1555 1.33 LINK C ASP B 130 N MSE B 131 1555 1555 1.33 LINK C MSE B 131 N GLY B 132 1555 1555 1.32 LINK C ASP B 157 N MSE B 158 1555 1555 1.33 LINK C MSE B 158 N ILE B 159 1555 1555 1.33 LINK C VAL B 187 N MSE B 188 1555 1555 1.33 LINK C MSE B 188 N ASN B 189 1555 1555 1.33 LINK C ARG B 238 N MSE B 239 1555 1555 1.33 LINK C MSE B 239 N LYS B 240 1555 1555 1.33 LINK C ARG B 258 N MSE B 259 1555 1555 1.32 LINK C MSE B 259 N ASP B 260 1555 1555 1.33 LINK C ALA B 321 N MSE B 322 1555 1555 1.32 LINK C MSE B 322 N GLU B 323 1555 1555 1.33 LINK C VAL B 363 N MSE B 364 1555 1555 1.32 LINK C MSE B 364 N ASN B 365 1555 1555 1.33 LINK C VAL B 388 N MSE B 389 1555 1555 1.33 LINK C MSE B 389 N ASP B 390 1555 1555 1.34 LINK C LEU B 392 N MSE B 393 1555 1555 1.33 LINK C MSE B 393 N GLN B 394 1555 1555 1.33 CRYST1 88.605 136.744 63.289 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011286 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007313 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015801 0.00000