HEADER TRANSFERASE, RNA BINDING PROTEIN 22-JUL-09 3IEF TITLE CRYSTAL STRUCTURE OF TRNA GUANINE-N1-METHYLTRANSFERASE FROM BARTONELLA TITLE 2 HENSELAE USING MPCS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE, TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.31; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BARTONELLA HENSELAE; SOURCE 3 ORGANISM_COMMON: ROCHALIMAEA HENSELAE; SOURCE 4 ORGANISM_TAXID: 38323; SOURCE 5 STRAIN: HOUSTON-1; SOURCE 6 GENE: TRMD, BH15820; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBADSMT KEYWDS NIAID, SSGCID, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS KEYWDS 2 DISEASES, MICROCAPILLARY PROTEIN CRYSTALLIZATION SYSTEM, MPCS, PSI- KEYWDS 3 2, PROTEIN STRUCTURE INITIATIVE, ACCELERATED TECHNOLOGIES CENTER FOR KEYWDS 4 GENE TO 3D STRUCTURE, ATCG3D, CYTOPLASM, METHYLTRANSFERASE, S- KEYWDS 5 ADENOSYL-L-METHIONINE, TRANSFERASE, TRNA PROCESSING, PROTEIN KNOT, KEYWDS 6 RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.E.EDWARDS,G.STAHL,C.J.GERDTS,B.L.STAKER,ACCELERATED TECHNOLOGIES AUTHOR 2 CENTER FOR GENE TO 3D STRUCTURE (ATCG3D),SEATTLE STRUCTURAL GENOMICS AUTHOR 3 CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 06-SEP-23 3IEF 1 REMARK REVDAT 4 01-NOV-17 3IEF 1 REMARK REVDAT 3 22-SEP-09 3IEF 1 AUTHOR REVDAT 2 01-SEP-09 3IEF 1 AUTHOR REVDAT 1 11-AUG-09 3IEF 0 JRNL AUTH T.E.EDWARDS,G.STAHL,C.J.GERDTS,B.L.STAKER, JRNL AUTH 2 ACCELERATED TECHNOLOGIES CENTER FOR GENE TO 3D STRUCTURE JRNL AUTH 3 (ATCG3D),SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS JRNL AUTH 4 DISEASE (SSGCID) JRNL TITL CRYSTAL STRUCTURE OF TRNA GUANINE-N1-METHYLTRANSFERASE FROM JRNL TITL 2 BARTONELLA HENSELAE USING MPCS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 825 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1136 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3287 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 93 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.99000 REMARK 3 B22 (A**2) : -1.98000 REMARK 3 B33 (A**2) : 2.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.619 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.266 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.191 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.475 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3349 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4544 ; 1.381 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 434 ; 6.039 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;33.112 ;22.897 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 526 ;15.455 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;18.305 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 514 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2569 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2173 ; 0.780 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3445 ; 1.471 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1176 ; 1.999 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1099 ; 3.296 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3IEF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054308. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16569 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.49200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 1P9P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: INITIAL CRYSTAL HIT JCSG+ CONDITION G7 REMARK 280 15% PEG 3350, 0.1M SUCCINIC ACID PH 7.0 OPTIMIZED WITH REMARK 280 MICROCAPILLARY GRADIENT, MPCS, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.00850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.59600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.23350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.59600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.00850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.23350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LEU A 45 REMARK 465 ASP A 46 REMARK 465 LYS A 47 REMARK 465 HIS A 48 REMARK 465 HIS A 49 REMARK 465 LYS A 231 REMARK 465 THR A 232 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ASP B 46 REMARK 465 LYS B 47 REMARK 465 HIS B 48 REMARK 465 HIS B 49 REMARK 465 VAL B 157 REMARK 465 MET B 158 REMARK 465 GLY B 159 REMARK 465 ASN B 160 REMARK 465 GLU B 161 REMARK 465 ILE B 162 REMARK 465 SER B 163 REMARK 465 ALA B 164 REMARK 465 ARG B 229 REMARK 465 GLN B 230 REMARK 465 LYS B 231 REMARK 465 THR B 232 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 6 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 PHE A 113 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 114 CG CD OE1 OE2 REMARK 470 MET A 158 CG SD CE REMARK 470 GLN A 216 CG CD OE1 NE2 REMARK 470 LYS A 227 CG CD CE NZ REMARK 470 GLN B 4 CG CD OE1 NE2 REMARK 470 GLN B 26 CG CD OE1 NE2 REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 ARG B 41 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 45 CG CD1 CD2 REMARK 470 ARG B 112 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 114 CG CD OE1 OE2 REMARK 470 LYS B 165 CG CD CE NZ REMARK 470 LYS B 200 CG CD CE NZ REMARK 470 GLN B 208 CG CD OE1 NE2 REMARK 470 GLN B 216 CG CD OE1 NE2 REMARK 470 LYS B 227 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 36 CD GLU A 36 OE2 0.095 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 22 -141.55 48.40 REMARK 500 ARG A 112 -83.34 -112.34 REMARK 500 PRO A 155 47.10 -74.79 REMARK 500 SER B 22 -147.24 51.37 REMARK 500 PHE B 113 -154.29 -94.05 REMARK 500 GLU B 114 33.39 -92.21 REMARK 500 LYS B 227 14.63 -64.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3E5Y RELATED DB: PDB REMARK 900 RNA METHYLTRANSFERASE FROM BURKHOLDERIA PSEUDOMALLEI REMARK 900 RELATED ID: BAHEA.01015.A RELATED DB: TARGETDB DBREF 3IEF A 1 232 UNP Q6G1R9 TRMD_BARHE 1 232 DBREF 3IEF B 1 232 UNP Q6G1R9 TRMD_BARHE 1 232 SEQADV 3IEF SER A 0 UNP Q6G1R9 EXPRESSION TAG SEQADV 3IEF SER B 0 UNP Q6G1R9 EXPRESSION TAG SEQRES 1 A 233 SER MET LYS PHE GLN ALA ARG VAL LEU THR LEU TYR PRO SEQRES 2 A 233 GLU MET PHE PRO GLY PHE LEU GLY CYS SER LEU ALA GLY SEQRES 3 A 233 GLN ALA LEU LYS GLN GLY ILE TRP SER LEU GLU THR VAL SEQRES 4 A 233 GLN ILE ARG ASP PHE ALA LEU ASP LYS HIS HIS SER VAL SEQRES 5 A 233 ASP ASP THR PRO ALA GLY GLY GLY ALA GLY MET VAL MET SEQRES 6 A 233 ARG ALA ASP VAL LEU ALA ALA ALA LEU ASP SER CYS PRO SEQRES 7 A 233 ASN ASP SER PRO ARG LEU LEU MET SER PRO ARG GLY ARG SEQRES 8 A 233 LEU LEU ASN GLN ALA TYR ALA ARG SER LEU ALA ARG SER SEQRES 9 A 233 SER GLY VAL THR LEU VAL CYS GLY ARG PHE GLU GLY VAL SEQRES 10 A 233 ASP GLU ARG ILE ILE GLU ALA ARG GLU LEU GLU GLU VAL SEQRES 11 A 233 SER ILE GLY ASP TYR ILE LEU SER GLY GLY GLU THR ALA SEQRES 12 A 233 ALA LEU VAL LEU LEU ASP ALA ILE VAL ARG LEU LEU PRO SEQRES 13 A 233 GLY VAL MET GLY ASN GLU ILE SER ALA LYS CYS GLU SER SEQRES 14 A 233 PHE GLU ASN GLY LEU LEU GLU HIS PRO GLN TYR THR ARG SEQRES 15 A 233 PRO ALA VAL PHE GLU GLY ARG GLY ILE PRO PRO VAL LEU SEQRES 16 A 233 THR SER GLY HIS HIS LYS ALA ILE ALA ASN TRP ARG GLN SEQRES 17 A 233 GLN GLN ALA GLU SER LEU THR ARG GLN ARG ARG PRO ASP SEQRES 18 A 233 LEU TYR ALA LEU TYR ASN LYS ASN ARG GLN LYS THR SEQRES 1 B 233 SER MET LYS PHE GLN ALA ARG VAL LEU THR LEU TYR PRO SEQRES 2 B 233 GLU MET PHE PRO GLY PHE LEU GLY CYS SER LEU ALA GLY SEQRES 3 B 233 GLN ALA LEU LYS GLN GLY ILE TRP SER LEU GLU THR VAL SEQRES 4 B 233 GLN ILE ARG ASP PHE ALA LEU ASP LYS HIS HIS SER VAL SEQRES 5 B 233 ASP ASP THR PRO ALA GLY GLY GLY ALA GLY MET VAL MET SEQRES 6 B 233 ARG ALA ASP VAL LEU ALA ALA ALA LEU ASP SER CYS PRO SEQRES 7 B 233 ASN ASP SER PRO ARG LEU LEU MET SER PRO ARG GLY ARG SEQRES 8 B 233 LEU LEU ASN GLN ALA TYR ALA ARG SER LEU ALA ARG SER SEQRES 9 B 233 SER GLY VAL THR LEU VAL CYS GLY ARG PHE GLU GLY VAL SEQRES 10 B 233 ASP GLU ARG ILE ILE GLU ALA ARG GLU LEU GLU GLU VAL SEQRES 11 B 233 SER ILE GLY ASP TYR ILE LEU SER GLY GLY GLU THR ALA SEQRES 12 B 233 ALA LEU VAL LEU LEU ASP ALA ILE VAL ARG LEU LEU PRO SEQRES 13 B 233 GLY VAL MET GLY ASN GLU ILE SER ALA LYS CYS GLU SER SEQRES 14 B 233 PHE GLU ASN GLY LEU LEU GLU HIS PRO GLN TYR THR ARG SEQRES 15 B 233 PRO ALA VAL PHE GLU GLY ARG GLY ILE PRO PRO VAL LEU SEQRES 16 B 233 THR SER GLY HIS HIS LYS ALA ILE ALA ASN TRP ARG GLN SEQRES 17 B 233 GLN GLN ALA GLU SER LEU THR ARG GLN ARG ARG PRO ASP SEQRES 18 B 233 LEU TYR ALA LEU TYR ASN LYS ASN ARG GLN LYS THR FORMUL 3 HOH *93(H2 O) HELIX 1 1 TYR A 11 PHE A 15 5 5 HELIX 2 2 PRO A 16 GLY A 20 5 5 HELIX 3 3 CYS A 21 GLN A 30 1 10 HELIX 4 4 ARG A 41 ALA A 44 5 4 HELIX 5 5 ARG A 65 ASP A 74 1 10 HELIX 6 6 ASN A 93 ALA A 101 1 9 HELIX 7 7 ASP A 117 ARG A 124 1 8 HELIX 8 8 GLY A 138 ARG A 152 1 15 HELIX 9 9 GLY A 159 SER A 163 5 5 HELIX 10 10 GLU A 167 GLY A 172 5 6 HELIX 11 11 PRO A 191 SER A 196 5 6 HELIX 12 12 HIS A 198 ARG A 218 1 21 HELIX 13 13 ARG A 218 ARG A 229 1 12 HELIX 14 14 TYR B 11 PHE B 15 5 5 HELIX 15 15 PRO B 16 GLY B 20 5 5 HELIX 16 16 CYS B 21 GLN B 30 1 10 HELIX 17 17 ARG B 41 ALA B 44 5 4 HELIX 18 18 ARG B 65 SER B 75 1 11 HELIX 19 19 ASN B 93 ARG B 102 1 10 HELIX 20 20 ASP B 117 ARG B 124 1 8 HELIX 21 21 GLY B 138 ARG B 152 1 15 HELIX 22 22 GLU B 167 GLY B 172 5 6 HELIX 23 23 PRO B 191 SER B 196 5 6 HELIX 24 24 HIS B 198 ARG B 218 1 21 HELIX 25 25 ARG B 218 LYS B 227 1 10 SHEET 1 A 6 TRP A 33 GLN A 39 0 SHEET 2 A 6 PHE A 3 THR A 9 1 N VAL A 7 O GLU A 36 SHEET 3 A 6 GLY A 105 CYS A 110 1 O LEU A 108 N ARG A 6 SHEET 4 A 6 ARG A 82 MET A 85 1 N LEU A 83 O VAL A 109 SHEET 5 A 6 GLU A 127 SER A 130 1 O GLU A 127 N ARG A 82 SHEET 6 A 6 ARG A 90 LEU A 91 1 N ARG A 90 O SER A 130 SHEET 1 B 2 ASP A 52 ASP A 53 0 SHEET 2 B 2 VAL A 63 MET A 64 -1 O VAL A 63 N ASP A 53 SHEET 1 C 2 VAL A 184 PHE A 185 0 SHEET 2 C 2 ARG A 188 GLY A 189 -1 O ARG A 188 N PHE A 185 SHEET 1 D 6 SER B 34 GLN B 39 0 SHEET 2 D 6 GLN B 4 THR B 9 1 N ALA B 5 O GLU B 36 SHEET 3 D 6 GLY B 105 CYS B 110 1 O LEU B 108 N LEU B 8 SHEET 4 D 6 ARG B 82 MET B 85 1 N LEU B 83 O VAL B 109 SHEET 5 D 6 GLU B 127 SER B 130 1 O GLU B 127 N LEU B 84 SHEET 6 D 6 ARG B 90 LEU B 91 1 N ARG B 90 O SER B 130 SHEET 1 E 2 ASP B 52 ASP B 53 0 SHEET 2 E 2 VAL B 63 MET B 64 -1 O VAL B 63 N ASP B 53 SHEET 1 F 2 VAL B 184 PHE B 185 0 SHEET 2 F 2 ARG B 188 GLY B 189 -1 O ARG B 188 N PHE B 185 CISPEP 1 PHE A 15 PRO A 16 0 0.52 CISPEP 2 ARG A 181 PRO A 182 0 4.82 CISPEP 3 PHE B 15 PRO B 16 0 0.98 CISPEP 4 ARG B 181 PRO B 182 0 5.88 CRYST1 56.017 84.467 97.192 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017852 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011839 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010289 0.00000