HEADER IMMUNE SYSTEM 23-JUL-09 3IF1 TITLE CRYSTAL STRUCTURE OF 237MAB IN COMPLEX WITH A GALNAC CAVEAT 3IF1 NGA B 1A HAS WRONG CHIRALITY AT ATOM C1 NGA D 213 HAS WRONG CAVEAT 2 3IF1 CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN LIGHT CHAIN (IGG2A); COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IMMUNOGLOBULIN HEAVY CHAIN (IGG2A); COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: BALB/C; SOURCE 6 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 STRAIN: BALB/C; SOURCE 14 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 10090 KEYWDS GLYCOPEPITDE, ANTIBODY, FAB, CARBOHYDRATE-BIDING, TUMOUR, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.L.BROOKS,S.V.EVANS,S.N.BORISOVA REVDAT 4 06-SEP-23 3IF1 1 HETSYN REVDAT 3 29-JUL-20 3IF1 1 CAVEAT COMPND REMARK HETNAM REVDAT 3 2 1 LINK SITE REVDAT 2 16-NOV-11 3IF1 1 VERSN HETATM REVDAT 1 23-JUN-10 3IF1 0 JRNL AUTH C.L.BROOKS,A.SCHIETINGER,S.N.BORISOVA,P.KUFER,M.OKON, JRNL AUTH 2 T.HIRAMA,C.R.MACKENZIE,L.X.WANG,H.SCHREIBER,S.V.EVANS JRNL TITL ANTIBODY RECOGNITION OF A UNIQUE TUMOR-SPECIFIC GLYCOPEPTIDE JRNL TITL 2 ANTIGEN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 10056 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20479270 JRNL DOI 10.1073/PNAS.0915176107 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.SCHIETINGER,M.PHILIP,B.A.YOSHIDA,P.AZADI,H.LIU, REMARK 1 AUTH 2 S.C.MEREDITH,H.SCHREIBER REMARK 1 TITL A MUTANT CHAPERONE CONVERTS A WILD-TYPE PROTEIN INTO A REMARK 1 TITL 2 TUMOR-SPECIFIC ANTIGEN REMARK 1 REF SCIENCE V. 314 304 2006 REMARK 1 REFN ISSN 0036-8075 REMARK 1 PMID 17038624 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.4_4 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 38592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9350 - 5.7170 0.98 2733 166 0.2590 0.2830 REMARK 3 2 5.7170 - 4.5560 0.99 2648 155 0.1860 0.2630 REMARK 3 3 4.5560 - 3.9850 0.99 2647 129 0.1730 0.2080 REMARK 3 4 3.9850 - 3.6230 0.99 2638 131 0.1960 0.2360 REMARK 3 5 3.6230 - 3.3650 1.00 2636 142 0.1900 0.2560 REMARK 3 6 3.3650 - 3.1670 1.00 2619 144 0.2070 0.2770 REMARK 3 7 3.1670 - 3.0090 1.00 2614 146 0.2340 0.2950 REMARK 3 8 3.0090 - 2.8790 0.99 2638 116 0.2480 0.3030 REMARK 3 9 2.8790 - 2.7680 0.99 2593 139 0.2410 0.3570 REMARK 3 10 2.7680 - 2.6730 0.99 2588 133 0.2560 0.3260 REMARK 3 11 2.6730 - 2.5890 0.99 2573 125 0.2480 0.3360 REMARK 3 12 2.5890 - 2.5160 0.99 2619 134 0.2520 0.3440 REMARK 3 13 2.5160 - 2.4500 0.98 2579 146 0.2470 0.3300 REMARK 3 14 2.4500 - 2.3900 0.98 2529 132 0.2380 0.3440 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 42.11 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33100 REMARK 3 B22 (A**2) : 1.64200 REMARK 3 B33 (A**2) : -1.97300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.34900 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6708 REMARK 3 ANGLE : 0.846 9104 REMARK 3 CHIRALITY : 0.057 1026 REMARK 3 PLANARITY : 0.003 1158 REMARK 3 DIHEDRAL : 17.683 2380 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3IF1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054330. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-002+ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38606 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 19.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.420 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.34 REMARK 200 R MERGE FOR SHELL (I) : 0.27100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3IET REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG MME 5000, ZNCL2, MGCL2, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 139.67500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.21000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 139.67500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.21000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 375 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS B 128 REMARK 465 GLY B 129 REMARK 465 ASP B 130 REMARK 465 THR B 131 REMARK 465 THR B 132 REMARK 465 GLY B 133 REMARK 465 SER B 134 REMARK 465 CYS D 128 REMARK 465 GLY D 129 REMARK 465 ASP D 130 REMARK 465 THR D 131 REMARK 465 THR D 132 REMARK 465 GLY D 133 REMARK 465 SER D 134 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 51 -49.64 80.48 REMARK 500 SER A 77 68.21 38.76 REMARK 500 HIS A 93 -167.70 -105.89 REMARK 500 ASP A 110 120.83 126.68 REMARK 500 PRO A 141 -168.79 -76.66 REMARK 500 LYS B 43 -29.04 68.10 REMARK 500 ASN B 52A 157.35 -28.83 REMARK 500 SER B 112 -95.02 -118.08 REMARK 500 SER B 113 -42.78 94.57 REMARK 500 PHE B 146 139.27 -174.44 REMARK 500 VAL C 51 -54.81 75.75 REMARK 500 SER C 77 72.30 41.84 REMARK 500 HIS C 93 -157.13 -109.59 REMARK 500 ASP C 110 126.95 86.01 REMARK 500 THR C 126 44.92 -76.37 REMARK 500 SER C 127 11.80 -160.98 REMARK 500 LYS D 43 -31.19 68.88 REMARK 500 ASN D 52A 152.82 -33.89 REMARK 500 SER D 112 -78.21 -119.95 REMARK 500 SER D 113 -43.57 83.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL B 111 SER B 112 -141.51 REMARK 500 VAL D 111 SER D 112 -143.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 214 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 3 OE1 REMARK 620 2 HOH A 234 O 78.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 213 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 34 NE2 REMARK 620 2 HOH A 218 O 86.0 REMARK 620 3 HOH A 229 O 140.3 104.6 REMARK 620 4 HOH B 225 O 106.4 121.5 100.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 221 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 143 OD1 REMARK 620 2 HOH A 240 O 114.3 REMARK 620 3 HIS D 55 ND1 112.9 104.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 215 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 185 OE1 REMARK 620 2 GLU A 185 OE2 52.6 REMARK 620 3 HIS A 189 NE2 113.7 79.8 REMARK 620 4 HOH A 259 O 95.3 144.9 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 218 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 123 OE2 REMARK 620 2 GLU C 123 OE1 53.4 REMARK 620 3 HOH C 221 O 160.5 110.7 REMARK 620 4 HOH C 238 O 89.7 120.7 90.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 214 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 215 O REMARK 620 2 HOH C 235 O 97.5 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3IET RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 237MAB WITH ANTIGEN DBREF 3IF1 A 2 212 PDB 3IF1 3IF1 2 212 DBREF 3IF1 C 2 212 PDB 3IF1 3IF1 2 212 DBREF 3IF1 B 1 212 PDB 3IF1 3IF1 1 212 DBREF 3IF1 D 1 212 PDB 3IF1 3IF1 1 212 SEQRES 1 A 215 ILE GLN LEU THR GLN SER PRO LEU SER LEU PRO VAL SER SEQRES 2 A 215 LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER GLN SEQRES 3 A 215 SER LEU VAL HIS SER ASN GLY ASN THR TYR LEU HIS TRP SEQRES 4 A 215 TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU ILE SEQRES 5 A 215 TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP ARG SEQRES 6 A 215 PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU LYS SEQRES 7 A 215 ILE SER SER VAL GLU ALA GLU ASP LEU GLY VAL TYR PHE SEQRES 8 A 215 CYS SER GLN SER THR HIS VAL PRO THR PHE GLY GLY GLY SEQRES 9 A 215 THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO THR SEQRES 10 A 215 VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU THR SER SEQRES 11 A 215 GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE TYR SEQRES 12 A 215 PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SER SEQRES 13 A 215 GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR ASP GLN SEQRES 14 A 215 ASP SER LYS ASP SER THR TYR SER MET SER SER THR LEU SEQRES 15 A 215 THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SER TYR SEQRES 16 A 215 THR CYS GLU ALA THR HIS LYS THR SER THR SER PRO ILE SEQRES 17 A 215 VAL LYS SER PHE ASN ARG GLU SEQRES 1 B 217 GLN VAL GLN LEU GLN GLN SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 217 PRO GLY GLY SER MET LYS ILE PHE CYS ALA ALA SER GLY SEQRES 3 B 217 PHE THR PHE SER ASP ALA TRP MET ASP TRP VAL ARG GLN SEQRES 4 B 217 SER PRO GLU LYS GLY LEU GLU TRP VAL ALA GLU ILE ARG SEQRES 5 B 217 ASN LYS ALA ASN ASN HIS GLU THR TYR TYR ALA GLU SER SEQRES 6 B 217 VAL LYS GLY ARG PHE THR ILE THR ARG ASP ASP SER LYS SEQRES 7 B 217 SER ARG MET SER LEU GLN MET ASN SER LEU ARG ALA GLU SEQRES 8 B 217 ASP THR GLY ILE TYR TYR CYS SER GLY GLY LYS VAL ARG SEQRES 9 B 217 ASN ALA TYR TRP GLY GLN GLY THR THR VAL THR VAL SER SEQRES 10 B 217 SER LYS THR THR LYS ALA PRO SER VAL TYR PRO LEU ALA SEQRES 11 B 217 PRO VAL CYS GLY ASP THR THR GLY SER SER VAL THR LEU SEQRES 12 B 217 GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR SEQRES 13 B 217 LEU THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS SEQRES 14 B 217 THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SEQRES 15 B 217 SER SER SER VAL THR VAL THR SER SER THR TRP PRO SER SEQRES 16 B 217 GLN SER ILE THR CYS ASN VAL ALA HIS PRO ALA SER SER SEQRES 17 B 217 THR LYS VAL ASP LYS LYS ILE GLU PRO SEQRES 1 C 215 ILE GLN LEU THR GLN SER PRO LEU SER LEU PRO VAL SER SEQRES 2 C 215 LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER GLN SEQRES 3 C 215 SER LEU VAL HIS SER ASN GLY ASN THR TYR LEU HIS TRP SEQRES 4 C 215 TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU ILE SEQRES 5 C 215 TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP ARG SEQRES 6 C 215 PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU LYS SEQRES 7 C 215 ILE SER SER VAL GLU ALA GLU ASP LEU GLY VAL TYR PHE SEQRES 8 C 215 CYS SER GLN SER THR HIS VAL PRO THR PHE GLY GLY GLY SEQRES 9 C 215 THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO THR SEQRES 10 C 215 VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU THR SER SEQRES 11 C 215 GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE TYR SEQRES 12 C 215 PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SER SEQRES 13 C 215 GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR ASP GLN SEQRES 14 C 215 ASP SER LYS ASP SER THR TYR SER MET SER SER THR LEU SEQRES 15 C 215 THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SER TYR SEQRES 16 C 215 THR CYS GLU ALA THR HIS LYS THR SER THR SER PRO ILE SEQRES 17 C 215 VAL LYS SER PHE ASN ARG GLU SEQRES 1 D 217 GLN VAL GLN LEU GLN GLN SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 217 PRO GLY GLY SER MET LYS ILE PHE CYS ALA ALA SER GLY SEQRES 3 D 217 PHE THR PHE SER ASP ALA TRP MET ASP TRP VAL ARG GLN SEQRES 4 D 217 SER PRO GLU LYS GLY LEU GLU TRP VAL ALA GLU ILE ARG SEQRES 5 D 217 ASN LYS ALA ASN ASN HIS GLU THR TYR TYR ALA GLU SER SEQRES 6 D 217 VAL LYS GLY ARG PHE THR ILE THR ARG ASP ASP SER LYS SEQRES 7 D 217 SER ARG MET SER LEU GLN MET ASN SER LEU ARG ALA GLU SEQRES 8 D 217 ASP THR GLY ILE TYR TYR CYS SER GLY GLY LYS VAL ARG SEQRES 9 D 217 ASN ALA TYR TRP GLY GLN GLY THR THR VAL THR VAL SER SEQRES 10 D 217 SER LYS THR THR LYS ALA PRO SER VAL TYR PRO LEU ALA SEQRES 11 D 217 PRO VAL CYS GLY ASP THR THR GLY SER SER VAL THR LEU SEQRES 12 D 217 GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR SEQRES 13 D 217 LEU THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS SEQRES 14 D 217 THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SEQRES 15 D 217 SER SER SER VAL THR VAL THR SER SER THR TRP PRO SER SEQRES 16 D 217 GLN SER ILE THR CYS ASN VAL ALA HIS PRO ALA SER SER SEQRES 17 D 217 THR LYS VAL ASP LYS LYS ILE GLU PRO HET ZN A 213 1 HET ZN A 215 1 HET ZN A 222 1 HET MG A 1 1 HET MG A 214 1 HET NGA B 1A 15 HET ZN C 218 1 HET MG C 1 1 HET MG C 213 1 HET MG C 214 1 HET ZN D 221 1 HET NGA D 213 15 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM NGA 2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE HETSYN NGA N-ACETYL-BETA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NGA BETA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 NGA ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-D-GALACTOSAMINE FORMUL 5 ZN 5(ZN 2+) FORMUL 8 MG 5(MG 2+) FORMUL 10 NGA 2(C8 H15 N O6) FORMUL 17 HOH *423(H2 O) HELIX 1 1 GLU A 79 LEU A 83 5 5 HELIX 2 2 SER A 121 THR A 126 1 6 HELIX 3 3 LYS A 183 ARG A 188 1 6 HELIX 4 4 THR B 28 ALA B 32 5 5 HELIX 5 5 ASP B 73 LYS B 75 5 3 HELIX 6 6 ARG B 83 THR B 87 5 5 HELIX 7 7 SER B 156 SER B 158 5 3 HELIX 8 8 PRO B 200 SER B 203 5 4 HELIX 9 9 GLU C 79 LEU C 83 5 5 HELIX 10 10 SER C 121 THR C 126 1 6 HELIX 11 11 LYS C 183 GLU C 187 1 5 HELIX 12 12 THR D 28 ALA D 32 5 5 HELIX 13 13 ASP D 73 LYS D 75 5 3 HELIX 14 14 ARG D 83 THR D 87 5 5 HELIX 15 15 SER D 156 SER D 158 5 3 HELIX 16 16 PRO D 200 SER D 203 5 4 SHEET 1 A 4 LEU A 4 SER A 7 0 SHEET 2 A 4 ALA A 19 SER A 25 -1 O ARG A 24 N THR A 5 SHEET 3 A 4 ASP A 70 ILE A 75 -1 O LEU A 73 N ILE A 21 SHEET 4 A 4 PHE A 62 SER A 67 -1 N SER A 63 O LYS A 74 SHEET 1 B 6 SER A 10 VAL A 13 0 SHEET 2 B 6 THR A 102 ILE A 106 1 O LYS A 103 N LEU A 11 SHEET 3 B 6 GLY A 84 GLN A 90 -1 N GLY A 84 O LEU A 104 SHEET 4 B 6 LEU A 33 GLN A 38 -1 N TYR A 36 O PHE A 87 SHEET 5 B 6 LYS A 45 TYR A 49 -1 O LEU A 47 N TRP A 35 SHEET 6 B 6 ASN A 53 ARG A 54 -1 O ASN A 53 N TYR A 49 SHEET 1 C 4 SER A 10 VAL A 13 0 SHEET 2 C 4 THR A 102 ILE A 106 1 O LYS A 103 N LEU A 11 SHEET 3 C 4 GLY A 84 GLN A 90 -1 N GLY A 84 O LEU A 104 SHEET 4 C 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 D 4 THR A 114 PHE A 118 0 SHEET 2 D 4 GLY A 129 PHE A 139 -1 O VAL A 133 N PHE A 118 SHEET 3 D 4 TYR A 173 THR A 182 -1 O MET A 175 N LEU A 136 SHEET 4 D 4 VAL A 159 TRP A 163 -1 N SER A 162 O SER A 176 SHEET 1 E 4 SER A 153 GLU A 154 0 SHEET 2 E 4 ASN A 145 ILE A 150 -1 N ILE A 150 O SER A 153 SHEET 3 E 4 SER A 191 THR A 197 -1 O THR A 197 N ASN A 145 SHEET 4 E 4 ILE A 205 ASN A 210 -1 O LYS A 207 N CYS A 194 SHEET 1 F 4 GLN B 3 SER B 7 0 SHEET 2 F 4 MET B 18 SER B 25 -1 O SER B 25 N GLN B 3 SHEET 3 F 4 ARG B 77 MET B 82 -1 O MET B 82 N MET B 18 SHEET 4 F 4 PHE B 67 ASP B 72 -1 N ASP B 72 O ARG B 77 SHEET 1 G 6 GLY B 10 VAL B 12 0 SHEET 2 G 6 THR B 107 VAL B 111 1 O THR B 110 N GLY B 10 SHEET 3 G 6 GLY B 88 GLY B 95 -1 N TYR B 90 O THR B 107 SHEET 4 G 6 TRP B 33 SER B 40 -1 N VAL B 37 O TYR B 91 SHEET 5 G 6 GLY B 44 ILE B 51 -1 O VAL B 48 N TRP B 36 SHEET 6 G 6 THR B 57 TYR B 59 -1 O TYR B 58 N GLU B 50 SHEET 1 H 4 GLY B 10 VAL B 12 0 SHEET 2 H 4 THR B 107 VAL B 111 1 O THR B 110 N GLY B 10 SHEET 3 H 4 GLY B 88 GLY B 95 -1 N TYR B 90 O THR B 107 SHEET 4 H 4 TYR B 102 TRP B 103 -1 O TYR B 102 N GLY B 94 SHEET 1 I 4 SER B 120 LEU B 124 0 SHEET 2 I 4 VAL B 136 TYR B 145 -1 O GLY B 139 N LEU B 124 SHEET 3 I 4 LEU B 174 VAL B 183 -1 O LEU B 177 N VAL B 142 SHEET 4 I 4 VAL B 163 GLN B 171 -1 N HIS B 164 O SER B 180 SHEET 1 J 3 THR B 151 TRP B 154 0 SHEET 2 J 3 THR B 194 HIS B 199 -1 O ASN B 196 N THR B 153 SHEET 3 J 3 THR B 204 LYS B 209 -1 O LYS B 208 N CYS B 195 SHEET 1 K 4 LEU C 4 SER C 7 0 SHEET 2 K 4 ALA C 19 SER C 25 -1 O ARG C 24 N THR C 5 SHEET 3 K 4 ASP C 70 ILE C 75 -1 O ILE C 75 N ALA C 19 SHEET 4 K 4 PHE C 62 SER C 67 -1 N SER C 63 O LYS C 74 SHEET 1 L 6 SER C 10 VAL C 13 0 SHEET 2 L 6 THR C 102 ILE C 106 1 O GLU C 105 N LEU C 11 SHEET 3 L 6 GLY C 84 GLN C 90 -1 N TYR C 86 O THR C 102 SHEET 4 L 6 LEU C 33 GLN C 38 -1 N HIS C 34 O SER C 89 SHEET 5 L 6 LYS C 45 TYR C 49 -1 O LEU C 47 N TRP C 35 SHEET 6 L 6 ASN C 53 ARG C 54 -1 O ASN C 53 N TYR C 49 SHEET 1 M 4 SER C 10 VAL C 13 0 SHEET 2 M 4 THR C 102 ILE C 106 1 O GLU C 105 N LEU C 11 SHEET 3 M 4 GLY C 84 GLN C 90 -1 N TYR C 86 O THR C 102 SHEET 4 M 4 THR C 97 PHE C 98 -1 O THR C 97 N GLN C 90 SHEET 1 N 4 THR C 114 PHE C 118 0 SHEET 2 N 4 GLY C 129 PHE C 139 -1 O VAL C 133 N PHE C 118 SHEET 3 N 4 TYR C 173 THR C 182 -1 O MET C 175 N LEU C 136 SHEET 4 N 4 VAL C 159 TRP C 163 -1 N SER C 162 O SER C 176 SHEET 1 O 4 SER C 153 ARG C 155 0 SHEET 2 O 4 ASN C 145 ILE C 150 -1 N TRP C 148 O ARG C 155 SHEET 3 O 4 SER C 191 THR C 197 -1 O GLU C 195 N LYS C 147 SHEET 4 O 4 ILE C 205 ASN C 210 -1 O ILE C 205 N ALA C 196 SHEET 1 P 4 GLN D 3 SER D 7 0 SHEET 2 P 4 MET D 18 SER D 25 -1 O PHE D 21 N SER D 7 SHEET 3 P 4 ARG D 77 MET D 82 -1 O MET D 82 N MET D 18 SHEET 4 P 4 PHE D 67 ASP D 72 -1 N ASP D 72 O ARG D 77 SHEET 1 Q 6 GLY D 10 VAL D 12 0 SHEET 2 Q 6 THR D 107 VAL D 111 1 O THR D 110 N VAL D 12 SHEET 3 Q 6 GLY D 88 GLY D 95 -1 N TYR D 90 O THR D 107 SHEET 4 Q 6 TRP D 33 GLN D 39 -1 N ASP D 35 O SER D 93 SHEET 5 Q 6 GLU D 46 ILE D 51 -1 O GLU D 46 N ARG D 38 SHEET 6 Q 6 THR D 57 TYR D 59 -1 O TYR D 58 N GLU D 50 SHEET 1 R 4 GLY D 10 VAL D 12 0 SHEET 2 R 4 THR D 107 VAL D 111 1 O THR D 110 N VAL D 12 SHEET 3 R 4 GLY D 88 GLY D 95 -1 N TYR D 90 O THR D 107 SHEET 4 R 4 TYR D 102 TRP D 103 -1 O TYR D 102 N GLY D 94 SHEET 1 S 4 SER D 120 LEU D 124 0 SHEET 2 S 4 VAL D 136 TYR D 145 -1 O LYS D 143 N SER D 120 SHEET 3 S 4 LEU D 174 VAL D 183 -1 O LEU D 177 N VAL D 142 SHEET 4 S 4 VAL D 163 GLN D 171 -1 N GLN D 171 O LEU D 174 SHEET 1 T 3 THR D 151 TRP D 154 0 SHEET 2 T 3 THR D 194 HIS D 199 -1 O ASN D 196 N THR D 153 SHEET 3 T 3 THR D 204 LYS D 209 -1 O LYS D 208 N CYS D 195 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.04 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.04 SSBOND 3 CYS B 22 CYS B 92 1555 1555 2.03 SSBOND 4 CYS B 140 CYS B 195 1555 1555 2.04 SSBOND 5 CYS C 23 CYS C 88 1555 1555 2.04 SSBOND 6 CYS C 134 CYS C 194 1555 1555 2.03 SSBOND 7 CYS D 22 CYS D 92 1555 1555 2.03 SSBOND 8 CYS D 140 CYS D 195 1555 1555 2.04 LINK MG MG A 1 OD2 ASP A 167 1555 1555 2.89 LINK OE1 GLN A 3 MG MG A 214 1555 1555 2.68 LINK NE2 HIS A 34 ZN ZN A 213 1555 1555 2.14 LINK OD1 ASP A 143 ZN ZN D 221 1555 1555 2.06 LINK OE1 GLU A 185 ZN ZN A 215 1555 1555 2.46 LINK OE2 GLU A 185 ZN ZN A 215 1555 1555 2.50 LINK NE2 HIS A 189 ZN ZN A 215 1555 1555 2.18 LINK ZN ZN A 213 O HOH A 218 1555 1555 2.39 LINK ZN ZN A 213 O HOH A 229 1555 1555 2.58 LINK ZN ZN A 213 O HOH B 225 1555 1555 2.31 LINK MG MG A 214 O HOH A 234 1555 1555 2.80 LINK ZN ZN A 215 O HOH A 259 1555 1555 2.63 LINK O HOH A 240 ZN ZN D 221 1555 1555 2.53 LINK MG MG C 1 OD2 ASP C 60 1555 1555 2.39 LINK OE2 GLU C 123 ZN ZN C 218 1555 1555 2.41 LINK OE1 GLU C 123 ZN ZN C 218 1555 1555 2.48 LINK MG MG C 214 O HOH C 215 1555 1555 2.83 LINK MG MG C 214 O HOH C 235 1555 1555 2.56 LINK ZN ZN C 218 O HOH C 221 1555 1555 2.69 LINK ZN ZN C 218 O HOH C 238 1555 1555 2.21 LINK ND1 HIS D 55 ZN ZN D 221 1555 1555 2.21 CISPEP 1 SER A 7 PRO A 8 0 -3.75 CISPEP 2 TYR A 140 PRO A 141 0 2.54 CISPEP 3 PHE B 146 PRO B 147 0 -2.72 CISPEP 4 GLU B 148 PRO B 149 0 1.12 CISPEP 5 TRP B 188 PRO B 189 0 6.43 CISPEP 6 SER C 7 PRO C 8 0 -2.58 CISPEP 7 TYR C 140 PRO C 141 0 1.62 CISPEP 8 PHE D 146 PRO D 147 0 -3.25 CISPEP 9 GLU D 148 PRO D 149 0 -1.15 CISPEP 10 TRP D 188 PRO D 189 0 5.23 CRYST1 279.350 38.420 95.990 90.00 109.11 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003580 0.000000 0.001240 0.00000 SCALE2 0.000000 0.026028 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011025 0.00000