HEADER HYDROLASE 24-JUL-09 3IFE TITLE 1.55 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF PEPTIDASE T (PEPT-1) TITLE 2 FROM BACILLUS ANTHRACIS STR. 'AMES ANCESTOR'. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDASE T; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRIPEPTIDE AMINOPEPTIDASE, AMINOTRIPEPTIDASE, TRIPEPTIDASE; COMPND 5 EC: 3.4.11.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_TAXID: 261594; SOURCE 4 STRAIN: AMES ANCESTOR; SOURCE 5 GENE: BAS3588, BA_3872, GBAA_3872, PEPT, PEPT-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS PEPTIDASE T, PEPT-1, METALLOPEPTIDASE, AMINOPEPTIDASE, HYDROLASE, KEYWDS 2 METAL-BINDING, METALLOPROTEASE, PROTEASE, STRUCTURAL GENOMICS, KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,A.HALAVATY,L.SHUVALOVA,I.DUBROVSKA,J.WINSOR,W.F.ANDERSON, AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 5 06-SEP-23 3IFE 1 HETSYN REVDAT 4 29-JUL-20 3IFE 1 COMPND REMARK SEQADV HET REVDAT 4 2 1 HETNAM FORMUL LINK SITE REVDAT 4 3 1 ATOM REVDAT 3 01-NOV-17 3IFE 1 REMARK REVDAT 2 13-JUL-11 3IFE 1 VERSN REVDAT 1 04-AUG-09 3IFE 0 JRNL AUTH G.MINASOV,A.HALAVATY,L.SHUVALOVA,I.DUBROVSKA,J.WINSOR, JRNL AUTH 2 W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 1.55 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF PEPTIDASE T JRNL TITL 2 (PEPT-1) FROM BACILLUS ANTHRACIS STR. 'AMES ANCESTOR'. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 73110 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3863 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5361 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 265 REMARK 3 BIN FREE R VALUE : 0.2150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3282 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 586 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 21.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.09000 REMARK 3 B22 (A**2) : -0.36000 REMARK 3 B33 (A**2) : 1.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.065 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.442 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3762 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2497 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5149 ; 1.493 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6167 ; 0.879 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 487 ; 3.190 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 193 ;29.925 ;25.751 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 650 ; 9.079 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.661 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 554 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4355 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 725 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2272 ; 0.854 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 917 ; 0.288 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3721 ; 1.481 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1490 ; 2.664 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1422 ; 4.329 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -5 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): 62.5499 35.0487 8.2174 REMARK 3 T TENSOR REMARK 3 T11: 0.0800 T22: 0.1451 REMARK 3 T33: 0.0184 T12: 0.0152 REMARK 3 T13: -0.0038 T23: -0.0434 REMARK 3 L TENSOR REMARK 3 L11: 2.3127 L22: 1.0673 REMARK 3 L33: 1.1619 L12: 0.3113 REMARK 3 L13: -0.1711 L23: 0.4881 REMARK 3 S TENSOR REMARK 3 S11: -0.1171 S12: 0.3374 S13: -0.1037 REMARK 3 S21: -0.0546 S22: 0.0815 S23: 0.0433 REMARK 3 S31: -0.0643 S32: -0.0812 S33: 0.0357 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 207 REMARK 3 ORIGIN FOR THE GROUP (A): 63.5185 32.7442 17.3071 REMARK 3 T TENSOR REMARK 3 T11: 0.0647 T22: 0.0574 REMARK 3 T33: 0.0381 T12: 0.0250 REMARK 3 T13: 0.0044 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 1.8768 L22: 0.4514 REMARK 3 L33: 0.6878 L12: 0.1568 REMARK 3 L13: 0.0115 L23: 0.0610 REMARK 3 S TENSOR REMARK 3 S11: -0.0610 S12: 0.0881 S13: -0.2404 REMARK 3 S21: 0.0303 S22: 0.0100 S23: -0.0178 REMARK 3 S31: 0.0276 S32: -0.0325 S33: 0.0510 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 208 A 349 REMARK 3 ORIGIN FOR THE GROUP (A): 88.5434 16.0236 33.0830 REMARK 3 T TENSOR REMARK 3 T11: 0.0593 T22: 0.0441 REMARK 3 T33: 0.0403 T12: 0.0091 REMARK 3 T13: -0.0039 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.9817 L22: 2.3436 REMARK 3 L33: 0.2524 L12: -1.2987 REMARK 3 L13: -0.1884 L23: 0.2217 REMARK 3 S TENSOR REMARK 3 S11: -0.0537 S12: -0.0819 S13: 0.0519 REMARK 3 S21: 0.0820 S22: 0.0412 S23: -0.2124 REMARK 3 S31: -0.0122 S32: -0.0142 S33: 0.0125 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 350 A 410 REMARK 3 ORIGIN FOR THE GROUP (A): 66.4520 34.0358 25.3137 REMARK 3 T TENSOR REMARK 3 T11: 0.0814 T22: 0.0555 REMARK 3 T33: 0.0220 T12: 0.0201 REMARK 3 T13: 0.0027 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.4863 L22: 0.7740 REMARK 3 L33: 0.5475 L12: -0.0203 REMARK 3 L13: 0.1924 L23: -0.0421 REMARK 3 S TENSOR REMARK 3 S11: -0.0556 S12: -0.0647 S13: -0.1190 REMARK 3 S21: 0.1028 S22: 0.0050 S23: 0.0138 REMARK 3 S31: -0.0000 S32: -0.0018 S33: 0.0506 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IFE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054342. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77209 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.55400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CRANK REMARK 200 STARTING MODEL: 1FNO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 7.5MG/ML, 0.25M REMARK 280 NACL, TRIS-HCL PH(8.3); SCREEN SOLUTION: JCSG+, E2, 0.2M NACL, REMARK 280 2M AMMONIUM SULFATE, 0.1M NA-CACODILATE PH(6.5) VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K; CRYO: 25% SUCROSE, 1.8M AMMONIUM REMARK 280 SULFATE., PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.60800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 71.36950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.60800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 71.36950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -250.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 178.43200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 200 N - CA - C ANGL. DEV. = 15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 199 37.81 -146.42 REMARK 500 ASP A 199 34.67 -146.42 REMARK 500 LEU A 203 127.40 -37.93 REMARK 500 TYR A 208 13.43 -152.16 REMARK 500 LYS A 233 -52.04 -125.50 REMARK 500 ASP A 272 -154.86 -147.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 411 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 79 NE2 REMARK 620 2 ASP A 142 OD1 96.0 REMARK 620 3 ASP A 199 OD1 105.4 91.6 REMARK 620 4 HOH A 958 O 100.2 102.6 149.2 REMARK 620 5 HOH A 958 O 124.9 116.4 116.1 33.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 412 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 142 OD2 REMARK 620 2 GLU A 177 OE2 99.9 REMARK 620 3 HIS A 381 NE2 97.4 101.1 REMARK 620 4 HOH A 958 O 89.3 87.9 167.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 413 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SO4 A 414 O2 REMARK 620 2 HOH A 582 O 106.5 REMARK 620 3 HOH A 583 O 134.8 61.0 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP02712 RELATED DB: TARGETDB DBREF 3IFE A 1 410 UNP Q81WU4 PEPT_BACAN 1 410 SEQADV 3IFE MET A -23 UNP Q81WU4 EXPRESSION TAG SEQADV 3IFE HIS A -22 UNP Q81WU4 EXPRESSION TAG SEQADV 3IFE HIS A -21 UNP Q81WU4 EXPRESSION TAG SEQADV 3IFE HIS A -20 UNP Q81WU4 EXPRESSION TAG SEQADV 3IFE HIS A -19 UNP Q81WU4 EXPRESSION TAG SEQADV 3IFE HIS A -18 UNP Q81WU4 EXPRESSION TAG SEQADV 3IFE HIS A -17 UNP Q81WU4 EXPRESSION TAG SEQADV 3IFE SER A -16 UNP Q81WU4 EXPRESSION TAG SEQADV 3IFE SER A -15 UNP Q81WU4 EXPRESSION TAG SEQADV 3IFE GLY A -14 UNP Q81WU4 EXPRESSION TAG SEQADV 3IFE VAL A -13 UNP Q81WU4 EXPRESSION TAG SEQADV 3IFE ASP A -12 UNP Q81WU4 EXPRESSION TAG SEQADV 3IFE LEU A -11 UNP Q81WU4 EXPRESSION TAG SEQADV 3IFE GLY A -10 UNP Q81WU4 EXPRESSION TAG SEQADV 3IFE THR A -9 UNP Q81WU4 EXPRESSION TAG SEQADV 3IFE GLU A -8 UNP Q81WU4 EXPRESSION TAG SEQADV 3IFE ASN A -7 UNP Q81WU4 EXPRESSION TAG SEQADV 3IFE LEU A -6 UNP Q81WU4 EXPRESSION TAG SEQADV 3IFE TYR A -5 UNP Q81WU4 EXPRESSION TAG SEQADV 3IFE PHE A -4 UNP Q81WU4 EXPRESSION TAG SEQADV 3IFE GLN A -3 UNP Q81WU4 EXPRESSION TAG SEQADV 3IFE SER A -2 UNP Q81WU4 EXPRESSION TAG SEQADV 3IFE ASN A -1 UNP Q81WU4 EXPRESSION TAG SEQADV 3IFE ALA A 0 UNP Q81WU4 EXPRESSION TAG SEQRES 1 A 434 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 434 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET LYS SEQRES 3 A 434 GLU GLU LEU ILE GLU ARG PHE THR ARG TYR VAL LYS ILE SEQRES 4 A 434 ASP THR GLN SER ASN GLU ASP SER HIS THR VAL PRO THR SEQRES 5 A 434 THR PRO GLY GLN ILE GLU PHE GLY LYS LEU LEU VAL GLU SEQRES 6 A 434 GLU LEU LYS GLU VAL GLY LEU THR GLU VAL THR MET ASP SEQRES 7 A 434 ASP ASN GLY TYR VAL MET ALA THR LEU PRO ALA ASN THR SEQRES 8 A 434 ASP LYS ASP VAL PRO VAL ILE GLY PHE LEU ALA HIS LEU SEQRES 9 A 434 ASP THR ALA THR ASP PHE THR GLY LYS ASN VAL LYS PRO SEQRES 10 A 434 GLN ILE HIS GLU ASN PHE ASP GLY ASN ALA ILE THR LEU SEQRES 11 A 434 ASN GLU GLU LEU ASN ILE VAL LEU THR PRO GLU GLN PHE SEQRES 12 A 434 PRO GLU LEU PRO SER TYR LYS GLY HIS THR ILE ILE THR SEQRES 13 A 434 THR ASP GLY THR THR LEU LEU GLY ALA ASP ASP LYS ALA SEQRES 14 A 434 GLY LEU THR GLU ILE MET VAL ALA MET ASN TYR LEU ILE SEQRES 15 A 434 HIS ASN PRO GLN ILE LYS HIS GLY LYS ILE ARG VAL ALA SEQRES 16 A 434 PHE THR PRO ASP GLU GLU ILE GLY ARG GLY PRO ALA HIS SEQRES 17 A 434 PHE ASP VAL GLU ALA PHE GLY ALA SER PHE ALA TYR MET SEQRES 18 A 434 MET ASP GLY GLY PRO LEU GLY GLY LEU GLU TYR GLU SER SEQRES 19 A 434 PHE ASN ALA ALA GLY ALA LYS LEU THR PHE ASN GLY THR SEQRES 20 A 434 ASN THR HIS PRO GLY THR ALA LYS ASN LYS MET ARG ASN SEQRES 21 A 434 ALA THR LYS LEU ALA MET GLU PHE ASN GLY HIS LEU PRO SEQRES 22 A 434 VAL GLU GLU ALA PRO GLU TYR THR GLU GLY TYR GLU GLY SEQRES 23 A 434 PHE TYR HIS LEU LEU SER LEU ASN GLY ASP VAL GLU GLN SEQRES 24 A 434 SER LYS ALA TYR TYR ILE ILE ARG ASP PHE ASP ARG LYS SEQRES 25 A 434 ASN PHE GLU ALA ARG LYS ASN THR ILE GLU ASN ILE VAL SEQRES 26 A 434 LYS GLN MET GLN GLU LYS TYR GLY GLN ASP ALA VAL VAL SEQRES 27 A 434 LEU GLU MET ASN ASP GLN TYR TYR ASN MET LEU GLU LYS SEQRES 28 A 434 ILE GLU PRO VAL ARG GLU ILE VAL ASP ILE ALA TYR GLU SEQRES 29 A 434 ALA MET LYS SER LEU ASN ILE GLU PRO ASN ILE HIS PRO SEQRES 30 A 434 ILE ARG GLY GLY THR ASP GLY SER GLN LEU SER TYR MET SEQRES 31 A 434 GLY LEU PRO THR PRO ASN ILE PHE THR GLY GLY GLU ASN SEQRES 32 A 434 TYR HIS GLY LYS PHE GLU TYR VAL SER VAL ASP VAL MET SEQRES 33 A 434 GLU LYS ALA VAL GLN VAL ILE ILE GLU ILE ALA ARG ARG SEQRES 34 A 434 PHE GLU GLU GLN ALA HET GLC B 1 11 HET FRU B 2 12 HET GLC C 1 11 HET FRU C 2 12 HET ZN A 411 1 HET ZN A 412 1 HET NA A 413 1 HET SO4 A 414 5 HET SO4 A 415 5 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETNAM SO4 SULFATE ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE FORMUL 2 GLC 2(C6 H12 O6) FORMUL 2 FRU 2(C6 H12 O6) FORMUL 4 ZN 2(ZN 2+) FORMUL 6 NA NA 1+ FORMUL 7 SO4 2(O4 S 2-) FORMUL 9 HOH *586(H2 O) HELIX 1 1 TYR A -5 LYS A 14 1 20 HELIX 2 2 THR A 29 GLY A 47 1 19 HELIX 3 3 GLU A 121 LYS A 126 5 6 HELIX 4 4 GLY A 140 HIS A 159 1 20 HELIX 5 5 GLY A 181 PHE A 185 5 5 HELIX 6 6 ASP A 186 GLY A 191 1 6 HELIX 7 7 HIS A 226 ALA A 230 5 5 HELIX 8 8 ASN A 236 HIS A 247 1 12 HELIX 9 9 ALA A 253 THR A 257 5 5 HELIX 10 10 ASP A 286 GLY A 309 1 24 HELIX 11 11 MET A 324 GLU A 329 1 6 HELIX 12 12 ARG A 332 LEU A 345 1 14 HELIX 13 13 THR A 358 MET A 366 1 9 HELIX 14 14 VAL A 389 ALA A 410 1 22 SHEET 1 A 5 THR A 49 MET A 53 0 SHEET 2 A 5 VAL A 59 LEU A 63 -1 O THR A 62 N THR A 49 SHEET 3 A 5 ILE A 168 THR A 173 -1 O ILE A 168 N LEU A 63 SHEET 4 A 5 ILE A 74 HIS A 79 1 N ILE A 74 O ARG A 169 SHEET 5 A 5 PHE A 194 MET A 197 1 O TYR A 196 N LEU A 77 SHEET 1 B 4 GLN A 94 HIS A 96 0 SHEET 2 B 4 ILE A 130 THR A 132 -1 O ILE A 130 N HIS A 96 SHEET 3 B 4 TYR A 386 SER A 388 -1 O VAL A 387 N ILE A 131 SHEET 4 B 4 GLY A 377 GLU A 378 -1 N GLU A 378 O TYR A 386 SHEET 1 C 2 ILE A 104 ASN A 107 0 SHEET 2 C 2 ILE A 112 LEU A 114 -1 O LEU A 114 N ILE A 104 SHEET 1 D 3 ASN A 350 ILE A 351 0 SHEET 2 D 3 GLY A 205 GLU A 207 1 N LEU A 206 O ASN A 350 SHEET 3 D 3 ASN A 372 ILE A 373 -1 O ASN A 372 N GLU A 207 SHEET 1 E 4 PHE A 263 GLY A 271 0 SHEET 2 E 4 GLN A 275 ASP A 284 -1 O ILE A 281 N HIS A 265 SHEET 3 E 4 ASN A 212 ASN A 221 -1 N PHE A 220 O SER A 276 SHEET 4 E 4 VAL A 313 TYR A 321 -1 O GLN A 320 N ALA A 213 LINK C1 GLC B 1 O2 FRU B 2 1555 1555 1.42 LINK C1 AGLC C 1 O2 AFRU C 2 1555 1555 1.41 LINK NE2 HIS A 79 ZN ZN A 411 1555 1555 2.12 LINK OD1 ASP A 142 ZN ZN A 411 1555 1555 1.92 LINK OD2 ASP A 142 ZN ZN A 412 1555 1555 2.03 LINK OE2 GLU A 177 ZN ZN A 412 1555 1555 2.04 LINK OD1 ASP A 199 ZN ZN A 411 1555 1555 2.10 LINK NE2 HIS A 381 ZN ZN A 412 1555 1555 2.16 LINK ZN ZN A 411 O AHOH A 958 1555 1555 2.00 LINK ZN ZN A 411 O BHOH A 958 1555 1555 2.27 LINK ZN ZN A 412 O AHOH A 958 1555 1555 2.17 LINK NA NA A 413 O2 SO4 A 414 1555 1555 2.32 LINK NA NA A 413 O HOH A 582 1555 1555 2.73 LINK NA NA A 413 O HOH A 583 1555 1555 2.38 CISPEP 1 VAL A 26 PRO A 27 0 -1.31 CISPEP 2 ASP A 142 ASP A 143 0 2.24 CRYST1 89.216 142.739 40.993 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011209 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007006 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024394 0.00000