HEADER LIGASE 27-JUL-09 3IG8 TITLE SACCHAROMYCES CEREVISIAE GLUTAMATE CYSTEINE LIGASE IN COMPLEX WITH TITLE 2 MG2+, L-GLUTAMATE AND ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE-CYSTEINE LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GAMMA-GLUTAMYLCYSTEINE SYNTHETASE, GAMMA-ECS, GCS; COMPND 5 EC: 6.3.2.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: GSH1, J0832, YJL101C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET21 KEYWDS LIGASE, GLUTATHIONE, ATP-GRASP, ATP-BINDING, GLUTATHIONE KEYWDS 2 BIOSYNTHESIS, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.BITEROVA,J.J.BARYCKI REVDAT 3 21-FEB-24 3IG8 1 REMARK SEQADV LINK REVDAT 2 26-DEC-12 3IG8 1 JRNL VERSN REVDAT 1 01-SEP-09 3IG8 0 JRNL AUTH E.I.BITEROVA,J.J.BARYCKI JRNL TITL MECHANISTIC DETAILS OF GLUTATHIONE BIOSYNTHESIS REVEALED BY JRNL TITL 2 CRYSTAL STRUCTURES OF SACCHAROMYCES CEREVISIAE GLUTAMATE JRNL TITL 3 CYSTEINE LIGASE. JRNL REF J.BIOL.CHEM. V. 284 32700 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19726687 JRNL DOI 10.1074/JBC.M109.025114 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 27023 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1869 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1538 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5461 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.76000 REMARK 3 B22 (A**2) : 1.76000 REMARK 3 B33 (A**2) : -3.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.585 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.310 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.203 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.891 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5664 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7665 ; 1.878 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 671 ; 6.878 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 287 ;37.481 ;24.181 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 951 ;17.517 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;17.180 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 810 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4366 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2890 ; 0.236 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3894 ; 0.324 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 321 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.172 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.227 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3436 ; 0.848 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5457 ; 1.507 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2538 ; 2.150 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2208 ; 3.212 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3IG8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054371. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30739 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.72700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 400, PH 6.8, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.22200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 58.92450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 58.92450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 123.33300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 58.92450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 58.92450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.11100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 58.92450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.92450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 123.33300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 58.92450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.92450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.11100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 82.22200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 674 REMARK 465 GLU A 675 REMARK 465 SER A 676 REMARK 465 LYS A 677 REMARK 465 CYS A 678 REMARK 465 ASP A 679 REMARK 465 LYS A 680 REMARK 465 LEU A 681 REMARK 465 ALA A 682 REMARK 465 ALA A 683 REMARK 465 ALA A 684 REMARK 465 LEU A 685 REMARK 465 GLY A 686 REMARK 465 HIS A 687 REMARK 465 HIS A 688 REMARK 465 HIS A 689 REMARK 465 HIS A 690 REMARK 465 HIS A 691 REMARK 465 HIS A 692 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 LYS A 171 CG CD CE NZ REMARK 470 ASP A 540 CG OD1 OD2 REMARK 470 LYS A 588 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 758 O HOH A 759 2.08 REMARK 500 O HOH A 757 O HOH A 760 2.08 REMARK 500 O HOH A 756 O HOH A 757 2.14 REMARK 500 O HOH A 756 O HOH A 760 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 90 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 PRO A 291 C - N - CA ANGL. DEV. = -9.2 DEGREES REMARK 500 ASP A 643 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 71 42.60 -104.60 REMARK 500 MET A 80 -101.19 -118.67 REMARK 500 ALA A 88 -29.17 -36.51 REMARK 500 ASN A 112 -145.64 55.75 REMARK 500 ASN A 144 70.39 46.28 REMARK 500 HIS A 146 67.69 15.21 REMARK 500 ASP A 188 -6.81 -47.67 REMARK 500 VAL A 195 -46.94 -23.33 REMARK 500 LYS A 220 69.29 -103.52 REMARK 500 PRO A 225 154.91 -48.13 REMARK 500 ASP A 228 80.50 -60.43 REMARK 500 ASP A 229 9.14 -63.54 REMARK 500 ASP A 256 36.70 -145.99 REMARK 500 ALA A 298 130.04 -38.36 REMARK 500 ALA A 299 15.63 -145.71 REMARK 500 ASP A 309 54.38 -103.07 REMARK 500 ASP A 349 1.41 -66.15 REMARK 500 ALA A 400 85.87 -163.72 REMARK 500 LEU A 425 6.61 -68.70 REMARK 500 PRO A 453 -152.70 -91.92 REMARK 500 ALA A 457 49.43 -90.70 REMARK 500 ASP A 524 15.69 54.20 REMARK 500 PHE A 528 -30.12 -153.74 REMARK 500 ASN A 539 83.10 163.94 REMARK 500 ASN A 559 18.42 -140.28 REMARK 500 PHE A 565 -68.55 -122.97 REMARK 500 LYS A 578 -50.22 -121.88 REMARK 500 LEU A 583 -37.80 -33.71 REMARK 500 HIS A 589 24.67 -142.09 REMARK 500 LYS A 632 -46.68 -29.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 696 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 50 OE1 REMARK 620 2 GLU A 50 OE2 52.9 REMARK 620 3 GLN A 268 OE1 90.2 82.9 REMARK 620 4 GLU A 470 OE2 85.8 138.1 106.9 REMARK 620 5 ADP A 694 O2B 72.9 76.3 158.4 85.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 697 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 50 OE2 REMARK 620 2 GLU A 103 OE2 76.3 REMARK 620 3 ADP A 694 O3B 80.7 149.3 REMARK 620 4 ADP A 694 O2A 55.5 73.2 77.1 REMARK 620 5 HOH A 808 O 152.0 83.6 124.2 135.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 695 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 52 OE2 REMARK 620 2 GLU A 96 OE2 83.9 REMARK 620 3 GLU A 103 OE1 98.9 81.4 REMARK 620 4 GLU A 693 OE2 83.0 66.9 148.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLU A 693 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 694 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 695 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 696 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 697 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 698 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3IG5 RELATED DB: PDB REMARK 900 SAME PROTEIN WITHOUT ADP DBREF 3IG8 A 1 678 UNP P32477 GSH1_YEAST 1 678 SEQADV 3IG8 ASP A 679 UNP P32477 EXPRESSION TAG SEQADV 3IG8 LYS A 680 UNP P32477 EXPRESSION TAG SEQADV 3IG8 LEU A 681 UNP P32477 EXPRESSION TAG SEQADV 3IG8 ALA A 682 UNP P32477 EXPRESSION TAG SEQADV 3IG8 ALA A 683 UNP P32477 EXPRESSION TAG SEQADV 3IG8 ALA A 684 UNP P32477 EXPRESSION TAG SEQADV 3IG8 LEU A 685 UNP P32477 EXPRESSION TAG SEQADV 3IG8 GLY A 686 UNP P32477 EXPRESSION TAG SEQADV 3IG8 HIS A 687 UNP P32477 EXPRESSION TAG SEQADV 3IG8 HIS A 688 UNP P32477 EXPRESSION TAG SEQADV 3IG8 HIS A 689 UNP P32477 EXPRESSION TAG SEQADV 3IG8 HIS A 690 UNP P32477 EXPRESSION TAG SEQADV 3IG8 HIS A 691 UNP P32477 EXPRESSION TAG SEQADV 3IG8 HIS A 692 UNP P32477 EXPRESSION TAG SEQRES 1 A 692 MET GLY LEU LEU ALA LEU GLY THR PRO LEU GLN TRP PHE SEQRES 2 A 692 GLU SER ARG THR TYR ASN GLU HIS ILE ARG ASP GLU GLY SEQRES 3 A 692 ILE GLU GLN LEU LEU TYR ILE PHE GLN ALA ALA GLY LYS SEQRES 4 A 692 ARG ASP ASN ASP PRO LEU PHE TRP GLY ASP GLU LEU GLU SEQRES 5 A 692 TYR MET VAL VAL ASP PHE ASP ASP LYS GLU ARG ASN SER SEQRES 6 A 692 MET LEU ASP VAL CYS HIS ASP LYS ILE LEU THR GLU LEU SEQRES 7 A 692 ASN MET GLU ASP SER SER LEU CYS GLU ALA ASN ASP VAL SEQRES 8 A 692 SER PHE HIS PRO GLU TYR GLY ARG TYR MET LEU GLU ALA SEQRES 9 A 692 THR PRO ALA SER PRO TYR LEU ASN TYR VAL GLY SER TYR SEQRES 10 A 692 VAL GLU VAL ASN MET GLN LYS ARG ARG ALA ILE ALA GLU SEQRES 11 A 692 TYR LYS LEU SER GLU TYR ALA ARG GLN ASP SER LYS ASN SEQRES 12 A 692 ASN LEU HIS VAL GLY SER ARG SER VAL PRO LEU THR LEU SEQRES 13 A 692 THR VAL PHE PRO ARG MET GLY CYS PRO ASP PHE ILE ASN SEQRES 14 A 692 ILE LYS ASP PRO TRP ASN HIS LYS ASN ALA ALA SER ARG SEQRES 15 A 692 SER LEU PHE LEU PRO ASP GLU VAL ILE ASN ARG HIS VAL SEQRES 16 A 692 ARG PHE PRO ASN LEU THR ALA SER ILE ARG THR ARG ARG SEQRES 17 A 692 GLY GLU LYS VAL CYS MET ASN VAL PRO MET TYR LYS ASP SEQRES 18 A 692 ILE ALA THR PRO GLU THR ASP ASP SER ILE TYR ASP ARG SEQRES 19 A 692 ASP TRP PHE LEU PRO GLU ASP LYS GLU ALA LYS LEU ALA SEQRES 20 A 692 SER LYS PRO GLY PHE ILE TYR MET ASP SER MET GLY PHE SEQRES 21 A 692 GLY MET GLY CYS SER CYS LEU GLN VAL THR PHE GLN ALA SEQRES 22 A 692 PRO ASN ILE ASN LYS ALA ARG TYR LEU TYR ASP ALA LEU SEQRES 23 A 692 VAL ASN PHE ALA PRO ILE MET LEU ALA PHE SER ALA ALA SEQRES 24 A 692 ALA PRO ALA PHE LYS GLY TRP LEU ALA ASP GLN ASP VAL SEQRES 25 A 692 ARG TRP ASN VAL ILE SER GLY ALA VAL ASP ASP ARG THR SEQRES 26 A 692 PRO LYS GLU ARG GLY VAL ALA PRO LEU LEU PRO LYS TYR SEQRES 27 A 692 ASN LYS ASN GLY PHE GLY GLY ILE ALA LYS ASP VAL GLN SEQRES 28 A 692 ASP LYS VAL LEU GLU ILE PRO LYS SER ARG TYR SER SER SEQRES 29 A 692 VAL ASP LEU PHE LEU GLY GLY SER LYS PHE PHE ASN ARG SEQRES 30 A 692 THR TYR ASN ASP THR ASN VAL PRO ILE ASN GLU LYS VAL SEQRES 31 A 692 LEU GLY ARG LEU LEU GLU ASN ASP LYS ALA PRO LEU ASP SEQRES 32 A 692 TYR ASP LEU ALA LYS HIS PHE ALA HIS LEU TYR ILE ARG SEQRES 33 A 692 ASP PRO VAL SER THR PHE GLU GLU LEU LEU ASN GLN ASP SEQRES 34 A 692 ASN LYS THR SER SER ASN HIS PHE GLU ASN ILE GLN SER SEQRES 35 A 692 THR ASN TRP GLN THR LEU ARG PHE LYS PRO PRO THR GLN SEQRES 36 A 692 GLN ALA THR PRO ASP LYS LYS ASP SER PRO GLY TRP ARG SEQRES 37 A 692 VAL GLU PHE ARG PRO PHE GLU VAL GLN LEU LEU ASP PHE SEQRES 38 A 692 GLU ASN ALA ALA TYR SER VAL LEU ILE TYR LEU ILE VAL SEQRES 39 A 692 ASP SER ILE LEU THR PHE SER ASP ASN ILE ASN ALA TYR SEQRES 40 A 692 ILE HIS MET SER LYS VAL TRP GLU ASN MET LYS ILE ALA SEQRES 41 A 692 HIS HIS ARG ASP ALA ILE LEU PHE GLU LYS PHE HIS TRP SEQRES 42 A 692 LYS LYS SER PHE ARG ASN ASP THR ASP VAL GLU THR GLU SEQRES 43 A 692 ASP TYR SER ILE SER GLU ILE PHE HIS ASN PRO GLU ASN SEQRES 44 A 692 GLY ILE PHE PRO GLN PHE VAL THR PRO ILE LEU CYS GLN SEQRES 45 A 692 LYS GLY PHE VAL THR LYS ASP TRP LYS GLU LEU LYS HIS SEQRES 46 A 692 SER SER LYS HIS GLU ARG LEU TYR TYR TYR LEU LYS LEU SEQRES 47 A 692 ILE SER ASP ARG ALA SER GLY GLU LEU PRO THR THR ALA SEQRES 48 A 692 LYS PHE PHE ARG ASN PHE VAL LEU GLN HIS PRO ASP TYR SEQRES 49 A 692 LYS HIS ASP SER LYS ILE SER LYS SER ILE ASN TYR ASP SEQRES 50 A 692 LEU LEU SER THR CYS ASP ARG LEU THR HIS LEU ASP ASP SEQRES 51 A 692 SER LYS GLY GLU LEU THR SER PHE LEU GLY ALA GLU ILE SEQRES 52 A 692 ALA GLU TYR VAL LYS LYS ASN LYS PRO SER ILE GLU SER SEQRES 53 A 692 LYS CYS ASP LYS LEU ALA ALA ALA LEU GLY HIS HIS HIS SEQRES 54 A 692 HIS HIS HIS HET GLU A 693 10 HET ADP A 694 27 HET MG A 695 1 HET MG A 696 1 HET MG A 697 1 HET PGE A 698 10 HETNAM GLU GLUTAMIC ACID HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM PGE TRIETHYLENE GLYCOL FORMUL 2 GLU C5 H9 N O4 FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG 3(MG 2+) FORMUL 7 PGE C6 H14 O4 FORMUL 8 HOH *110(H2 O) HELIX 1 1 GLN A 11 ARG A 16 1 6 HELIX 2 2 TYR A 18 GLY A 38 1 21 HELIX 3 3 LYS A 73 LEU A 78 1 6 HELIX 4 4 ASP A 82 ASN A 89 1 8 HELIX 5 5 SER A 116 ASN A 144 1 29 HELIX 6 6 PRO A 187 ILE A 191 5 5 HELIX 7 7 VAL A 195 GLY A 209 1 15 HELIX 8 8 PRO A 239 SER A 248 1 10 HELIX 9 9 SER A 257 GLY A 261 5 5 HELIX 10 10 ASN A 275 VAL A 287 1 13 HELIX 11 11 ASN A 288 ALA A 298 1 11 HELIX 12 12 ARG A 313 VAL A 321 1 9 HELIX 13 13 THR A 325 GLY A 330 1 6 HELIX 14 14 ASN A 339 PHE A 343 5 5 HELIX 15 15 ALA A 347 VAL A 354 5 8 HELIX 16 16 ASN A 376 ASN A 380 5 5 HELIX 17 17 ASN A 387 GLU A 396 1 10 HELIX 18 18 ASP A 403 TYR A 414 1 12 HELIX 19 19 GLU A 423 ASN A 427 5 5 HELIX 20 20 SER A 434 SER A 442 1 9 HELIX 21 21 LEU A 479 PHE A 500 1 22 HELIX 22 22 HIS A 509 ALA A 520 1 12 HELIX 23 23 ASP A 524 GLU A 529 1 6 HELIX 24 24 ILE A 550 ASN A 556 1 7 HELIX 25 25 GLY A 560 PHE A 565 1 6 HELIX 26 26 PHE A 565 LYS A 573 1 9 HELIX 27 27 ASP A 579 SER A 586 5 8 HELIX 28 28 HIS A 589 SER A 604 1 16 HELIX 29 29 THR A 609 HIS A 621 1 13 HELIX 30 30 SER A 631 HIS A 647 1 17 HELIX 31 31 LEU A 648 LYS A 652 5 5 HELIX 32 32 GLY A 653 LYS A 669 1 17 SHEET 1 A 4 VAL A 91 HIS A 94 0 SHEET 2 A 4 MET A 101 PRO A 106 -1 O GLU A 103 N HIS A 94 SHEET 3 A 4 PHE A 46 ASP A 59 -1 N TYR A 53 O LEU A 102 SHEET 4 A 4 ASN A 64 LEU A 67 -1 O MET A 66 N ASP A 57 SHEET 1 B 3 SER A 149 LEU A 154 0 SHEET 2 B 3 PHE A 46 ASP A 59 -1 N PHE A 58 O ARG A 150 SHEET 3 B 3 TYR A 110 LEU A 111 -1 O TYR A 110 N TRP A 47 SHEET 1 C 5 SER A 149 LEU A 154 0 SHEET 2 C 5 PHE A 46 ASP A 59 -1 N PHE A 58 O ARG A 150 SHEET 3 C 5 GLN A 268 ALA A 273 -1 O THR A 270 N GLY A 48 SHEET 4 C 5 TRP A 467 PHE A 471 -1 O PHE A 471 N VAL A 269 SHEET 5 C 5 LEU A 448 LYS A 451 -1 N LYS A 451 O ARG A 468 SHEET 1 D 2 MET A 214 PRO A 217 0 SHEET 2 D 2 PHE A 252 MET A 255 -1 O ILE A 253 N VAL A 216 SHEET 1 E 2 ALA A 302 PHE A 303 0 SHEET 2 E 2 TRP A 306 LEU A 307 -1 O TRP A 306 N PHE A 303 SHEET 1 F 2 LYS A 530 LYS A 534 0 SHEET 2 F 2 THR A 545 SER A 549 -1 O TYR A 548 N PHE A 531 LINK OE1 GLU A 50 MG MG A 696 1555 1555 2.17 LINK OE2 GLU A 50 MG MG A 696 1555 1555 2.78 LINK OE2 GLU A 50 MG MG A 697 1555 1555 2.21 LINK OE2 GLU A 52 MG MG A 695 1555 1555 2.20 LINK OE2 GLU A 96 MG MG A 695 1555 1555 2.22 LINK OE1 GLU A 103 MG MG A 695 1555 1555 2.18 LINK OE2 GLU A 103 MG MG A 697 1555 1555 2.18 LINK OE1 GLN A 268 MG MG A 696 1555 1555 2.18 LINK OE2 GLU A 470 MG MG A 696 1555 1555 2.17 LINK OE2 GLU A 693 MG MG A 695 1555 1555 2.20 LINK O2B ADP A 694 MG MG A 696 1555 1555 2.17 LINK O3B ADP A 694 MG MG A 697 1555 1555 2.19 LINK O2A ADP A 694 MG MG A 697 1555 1555 2.69 LINK MG MG A 697 O HOH A 808 1555 1555 2.93 CISPEP 1 LEU A 238 PRO A 239 0 5.70 SITE 1 AC1 12 GLU A 52 GLU A 96 CYS A 264 CYS A 266 SITE 2 AC1 12 GLN A 268 ARG A 313 ILE A 317 TYR A 362 SITE 3 AC1 12 ARG A 472 MG A 695 HOH A 806 HOH A 807 SITE 1 AC2 15 PHE A 46 GLY A 48 ASP A 49 GLU A 50 SITE 2 AC2 15 GLU A 103 THR A 270 GLN A 272 ARG A 468 SITE 3 AC2 15 GLU A 470 MG A 696 MG A 697 HOH A 766 SITE 4 AC2 15 HOH A 798 HOH A 803 HOH A 805 SITE 1 AC3 6 GLU A 52 GLU A 96 GLU A 103 GLN A 268 SITE 2 AC3 6 GLU A 693 MG A 697 SITE 1 AC4 4 GLU A 50 GLN A 268 GLU A 470 ADP A 694 SITE 1 AC5 5 GLU A 50 GLU A 103 ADP A 694 MG A 695 SITE 2 AC5 5 HOH A 808 SITE 1 AC6 8 GLY A 163 CYS A 164 PRO A 165 ASP A 166 SITE 2 AC6 8 PRO A 173 TRP A 174 PHE A 185 TYR A 232 CRYST1 117.849 117.849 164.444 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008485 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008485 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006081 0.00000