HEADER TRANSCRIPTION/DNA 28-JUL-09 3IGM TITLE A 2.2A CRYSTAL STRUCTURE OF THE AP2 DOMAIN OF PF14_0633 FROM P. TITLE 2 FALCIPARUM, BOUND AS A DOMAIN-SWAPPED DIMER TO ITS COGNATE DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PF14_0633 PROTEIN; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: UNP RESIDUES 63-123, AP2 DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*TP*GP*CP*AP*TP*GP*CP*A)-3'; COMPND 8 CHAIN: W, X, C, D; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: COGNATE DNA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 GENE: FP14_0633, PF14_0633; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSURE, A PGEX4T-1 DERIVATIVE; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN P. FALCIPARUM. DNA SOURCE 14 PRODUCED FOR THIS STUDY WAS CHEMICALLY SYNTHESIZED. KEYWDS AP2 DOMAIN, PLASMODIUM FALCIPARUM, SPECIFIC TRANSCRIPTION FACTOR, KEYWDS 2 PROTEIN-DNA COMPLEX, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.E.LINDNER,E.DE SILVA,J.L.KECK,M.LLINAS REVDAT 4 01-NOV-17 3IGM 1 REMARK REVDAT 3 13-JUL-11 3IGM 1 VERSN REVDAT 2 09-FEB-10 3IGM 1 JRNL REVDAT 1 10-NOV-09 3IGM 0 JRNL AUTH S.E.LINDNER,E.K.DE SILVA,J.L.KECK,M.LLINAS JRNL TITL STRUCTURAL DETERMINANTS OF DNA BINDING BY A P. FALCIPARUM JRNL TITL 2 APIAP2 TRANSCRIPTIONAL REGULATOR. JRNL REF J.MOL.BIOL. V. 395 558 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 19913037 JRNL DOI 10.1016/J.JMB.2009.11.004 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 10478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 526 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 581 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.4220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 971 REMARK 3 NUCLEIC ACID ATOMS : 623 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.84000 REMARK 3 B22 (A**2) : -1.48000 REMARK 3 B33 (A**2) : -1.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.334 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.243 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.180 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.931 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1695 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2400 ; 1.348 ; 2.394 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 116 ; 6.075 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 49 ;21.052 ;21.020 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 179 ;14.458 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;17.111 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 245 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1090 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 585 ; 0.617 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 927 ; 1.184 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1110 ; 1.127 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1473 ; 1.805 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 62 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4456 -5.6150 -20.3140 REMARK 3 T TENSOR REMARK 3 T11: 0.0926 T22: 0.0398 REMARK 3 T33: 0.0680 T12: -0.0118 REMARK 3 T13: 0.0417 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.4607 L22: 0.5445 REMARK 3 L33: 9.6832 L12: -0.2370 REMARK 3 L13: 3.5098 L23: 0.0132 REMARK 3 S TENSOR REMARK 3 S11: 0.1729 S12: 0.0021 S13: -0.1200 REMARK 3 S21: 0.0889 S22: 0.0412 S23: 0.1298 REMARK 3 S31: 0.4024 S32: 0.0549 S33: -0.2141 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 62 B 117 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9642 -1.0769 -27.3083 REMARK 3 T TENSOR REMARK 3 T11: 0.1110 T22: 0.0943 REMARK 3 T33: 0.1039 T12: -0.0423 REMARK 3 T13: 0.0154 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 1.1839 L22: 0.2593 REMARK 3 L33: 9.8892 L12: -0.3430 REMARK 3 L13: 2.3768 L23: -1.5690 REMARK 3 S TENSOR REMARK 3 S11: -0.0328 S12: 0.0887 S13: 0.0878 REMARK 3 S21: -0.0185 S22: 0.0668 S23: 0.0115 REMARK 3 S31: 0.2432 S32: -0.2973 S33: -0.0340 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 8 REMARK 3 RESIDUE RANGE : D 1 D 7 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6921 -1.3296 -13.2621 REMARK 3 T TENSOR REMARK 3 T11: 0.1512 T22: 0.1328 REMARK 3 T33: 0.2627 T12: -0.0507 REMARK 3 T13: 0.0709 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 2.8765 L22: 4.8339 REMARK 3 L33: 5.3028 L12: -1.0093 REMARK 3 L13: -0.6642 L23: 1.8028 REMARK 3 S TENSOR REMARK 3 S11: 0.0414 S12: 0.1707 S13: 0.1645 REMARK 3 S21: -0.1823 S22: 0.0789 S23: -0.9101 REMARK 3 S31: -0.1362 S32: 0.6339 S33: -0.1204 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : W 1 W 8 REMARK 3 RESIDUE RANGE : X 1 X 8 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7092 12.1749 -33.7973 REMARK 3 T TENSOR REMARK 3 T11: 0.1029 T22: 0.0643 REMARK 3 T33: 0.0904 T12: -0.0353 REMARK 3 T13: -0.0221 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 4.7050 L22: 2.8098 REMARK 3 L33: 3.9339 L12: 0.5541 REMARK 3 L13: -0.6124 L23: 0.6006 REMARK 3 S TENSOR REMARK 3 S11: -0.1899 S12: 0.1890 S13: 0.4752 REMARK 3 S21: 0.2997 S22: 0.1868 S23: -0.0628 REMARK 3 S31: -0.3009 S32: 0.2616 S33: 0.0031 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IGM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054385. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97886 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10478 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 32.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.4 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.38100 REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5M-1.25M 1,6-HEXANEDIOL 100MM NAOAC REMARK 280 PH 5.1 @295K 10MM COCL2 10-20% ETHYLENE GLYCOL, VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.64800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.64800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 21.90500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.41050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 21.90500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.41050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 88.64800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 21.90500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.41050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.64800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 21.90500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 29.41050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY OF PROTEIN IS DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, W, X, A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 59 REMARK 465 SER B 60 REMARK 465 HIS B 61 REMARK 465 LEU B 124 REMARK 465 GLU B 125 REMARK 465 PRO B 126 REMARK 465 GLY B 127 REMARK 465 GLY B 128 REMARK 465 SER B 129 REMARK 465 GLN B 130 REMARK 465 PHE B 131 REMARK 465 ILE B 132 REMARK 465 VAL B 133 REMARK 465 THR B 134 REMARK 465 ASP B 135 REMARK 465 GLY A 59 REMARK 465 SER A 60 REMARK 465 HIS A 61 REMARK 465 ASN A 118 REMARK 465 ASN A 119 REMARK 465 GLY A 120 REMARK 465 ARG A 121 REMARK 465 LYS A 122 REMARK 465 LYS A 123 REMARK 465 LEU A 124 REMARK 465 GLU A 125 REMARK 465 PRO A 126 REMARK 465 GLY A 127 REMARK 465 GLY A 128 REMARK 465 SER A 129 REMARK 465 GLN A 130 REMARK 465 PHE A 131 REMARK 465 ILE A 132 REMARK 465 VAL A 133 REMARK 465 THR A 134 REMARK 465 ASP A 135 REMARK 465 DA D 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT W 1 O4' - C1' - N1 ANGL. DEV. = 6.0 DEGREES REMARK 500 DT W 5 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 DG W 6 O4' - C1' - N9 ANGL. DEV. = -4.7 DEGREES REMARK 500 DC X 3 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT C 1 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA C 4 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES REMARK 500 DA C 8 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 DC D 3 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL DBREF 3IGM B 63 123 UNP Q8IKH2 Q8IKH2_PLAF7 63 123 DBREF 3IGM A 63 123 UNP Q8IKH2 Q8IKH2_PLAF7 63 123 DBREF 3IGM W 1 8 PDB 3IGM 3IGM 1 8 DBREF 3IGM X 1 8 PDB 3IGM 3IGM 1 8 DBREF 3IGM C 1 8 PDB 3IGM 3IGM 1 8 DBREF 3IGM D 1 8 PDB 3IGM 3IGM 1 8 SEQADV 3IGM GLY B 59 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM SER B 60 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM HIS B 61 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM MET B 62 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM LEU B 124 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM GLU B 125 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM PRO B 126 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM GLY B 127 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM GLY B 128 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM SER B 129 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM GLN B 130 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM PHE B 131 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM ILE B 132 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM VAL B 133 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM THR B 134 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM ASP B 135 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM GLY A 59 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM SER A 60 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM HIS A 61 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM MET A 62 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM LEU A 124 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM GLU A 125 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM PRO A 126 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM GLY A 127 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM GLY A 128 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM SER A 129 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM GLN A 130 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM PHE A 131 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM ILE A 132 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM VAL A 133 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM THR A 134 UNP Q8IKH2 EXPRESSION TAG SEQADV 3IGM ASP A 135 UNP Q8IKH2 EXPRESSION TAG SEQRES 1 B 77 GLY SER HIS MET SER SER GLY TYR PRO GLY VAL SER TRP SEQRES 2 B 77 ASN LYS ARG MET CYS ALA TRP LEU ALA PHE PHE TYR ASP SEQRES 3 B 77 GLY ALA SER ARG ARG SER ARG THR PHE HIS PRO LYS HIS SEQRES 4 B 77 PHE ASN MET ASP LYS GLU LYS ALA ARG LEU ALA ALA VAL SEQRES 5 B 77 GLU PHE MET LYS THR VAL GLU ASN ASN GLY ARG LYS LYS SEQRES 6 B 77 LEU GLU PRO GLY GLY SER GLN PHE ILE VAL THR ASP SEQRES 1 W 8 DT DG DC DA DT DG DC DA SEQRES 1 X 8 DT DG DC DA DT DG DC DA SEQRES 1 A 77 GLY SER HIS MET SER SER GLY TYR PRO GLY VAL SER TRP SEQRES 2 A 77 ASN LYS ARG MET CYS ALA TRP LEU ALA PHE PHE TYR ASP SEQRES 3 A 77 GLY ALA SER ARG ARG SER ARG THR PHE HIS PRO LYS HIS SEQRES 4 A 77 PHE ASN MET ASP LYS GLU LYS ALA ARG LEU ALA ALA VAL SEQRES 5 A 77 GLU PHE MET LYS THR VAL GLU ASN ASN GLY ARG LYS LYS SEQRES 6 A 77 LEU GLU PRO GLY GLY SER GLN PHE ILE VAL THR ASP SEQRES 1 C 8 DT DG DC DA DT DG DC DA SEQRES 1 D 8 DT DG DC DA DT DG DC DA FORMUL 7 HOH *97(H2 O) HELIX 1 1 HIS B 97 VAL B 116 1 20 HELIX 2 2 HIS A 97 GLU A 117 1 21 SHEET 1 A 3 VAL B 69 ASN B 72 0 SHEET 2 A 3 ALA B 77 ASP B 84 -1 O ALA B 77 N ASN B 72 SHEET 3 A 3 SER B 87 PHE B 93 -1 O PHE B 93 N TRP B 78 SHEET 1 B 3 VAL A 69 ASN A 72 0 SHEET 2 B 3 ALA A 77 ASP A 84 -1 O LEU A 79 N SER A 70 SHEET 3 B 3 SER A 87 PHE A 93 -1 O ARG A 89 N PHE A 82 SSBOND 1 CYS B 76 CYS A 76 1555 1555 3.00 CRYST1 43.810 58.821 177.296 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022826 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017001 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005640 0.00000