HEADER HYDROLASE 30-JUL-09 3IHR TITLE CRYSTAL STRUCTURE OF UCH37 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UCH-L5, UBIQUITIN THIOESTERASE L5, UBIQUITIN C-TERMINAL COMPND 5 HYDROLASE UCH37; COMPND 6 EC: 3.4.19.12; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AD-019, CGI-70, UCH37, UCHL5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834 PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVP 16 KEYWDS CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, UCH37, UCH-L5, UBIQUITIN KEYWDS 2 HYDROLASE, HOMO SAPIENS, UBIQUITIN, PROTEASOME, INO80, SMAD7, RPN13, KEYWDS 3 PSI, PROTEIN STRUCTURE INITIATIVE, CESG, STRUCTURAL GENOMICS, KEYWDS 4 HYDROLASE, PROTEASE, THIOL PROTEASE, UBL CONJUGATION PATHWAY EXPDTA X-RAY DIFFRACTION AUTHOR E.S.BURGIE,C.A.BINGMAN,G.N.PHILLIPS JR.,CENTER FOR EUKARYOTIC AUTHOR 2 STRUCTURAL GENOMICS (CESG) REVDAT 8 26-JUL-23 3IHR 1 JRNL REVDAT 7 13-OCT-21 3IHR 1 REMARK SEQADV LINK REVDAT 6 01-NOV-17 3IHR 1 REMARK REVDAT 5 19-JUN-13 3IHR 1 JRNL REVDAT 4 23-JAN-13 3IHR 1 JRNL REVDAT 3 09-JAN-13 3IHR 1 JRNL REVDAT 2 10-OCT-12 3IHR 1 JRNL VERSN REVDAT 1 11-AUG-09 3IHR 0 JRNL AUTH S.E.BURGIE,C.A.BINGMAN,A.B.SONI,G.N.PHILLIPS JR. JRNL TITL STRUCTURAL CHARACTERIZATION OF HUMAN UCH37. JRNL REF PROTEINS V. 80 649 2012 JRNL REFN ESSN 1097-0134 JRNL PMID 21953935 JRNL DOI 10.1002/PROT.23147 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 13796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5650 - 5.0430 1.00 2947 143 0.2190 0.2500 REMARK 3 2 5.0430 - 4.0030 1.00 2837 137 0.1540 0.2130 REMARK 3 3 4.0030 - 3.4970 1.00 2796 134 0.1770 0.1990 REMARK 3 4 3.4970 - 3.1780 0.93 2575 141 0.2150 0.2670 REMARK 3 5 3.1780 - 2.9500 0.71 1959 127 0.2480 0.2780 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 68.34 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.000 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 107.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -16.61100 REMARK 3 B22 (A**2) : -14.27900 REMARK 3 B33 (A**2) : 26.32900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2331 REMARK 3 ANGLE : 1.092 3141 REMARK 3 CHIRALITY : 0.067 344 REMARK 3 PLANARITY : 0.004 409 REMARK 3 DIHEDRAL : 17.634 874 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 7:56) REMARK 3 ORIGIN FOR THE GROUP (A): 82.3178 88.5944 35.0592 REMARK 3 T TENSOR REMARK 3 T11: 0.7121 T22: 0.4488 REMARK 3 T33: 0.6875 T12: 0.0051 REMARK 3 T13: 0.0191 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 1.7883 L22: 1.1860 REMARK 3 L33: 2.3298 L12: 2.0547 REMARK 3 L13: 0.5806 L23: -0.5771 REMARK 3 S TENSOR REMARK 3 S11: -0.6939 S12: 0.2496 S13: 0.2490 REMARK 3 S21: -0.5229 S22: 0.5125 S23: -0.1195 REMARK 3 S31: -0.6224 S32: 0.3153 S33: 0.2284 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 57:65) REMARK 3 ORIGIN FOR THE GROUP (A): 94.9038 70.2357 34.4067 REMARK 3 T TENSOR REMARK 3 T11: 1.1326 T22: 1.4816 REMARK 3 T33: 1.6309 T12: 0.0701 REMARK 3 T13: -0.0053 T23: -0.1505 REMARK 3 L TENSOR REMARK 3 L11: 3.9588 L22: 2.3802 REMARK 3 L33: 6.2208 L12: -1.6068 REMARK 3 L13: 7.9351 L23: 0.0442 REMARK 3 S TENSOR REMARK 3 S11: 2.6093 S12: -1.3310 S13: 1.2359 REMARK 3 S21: 0.0851 S22: 1.2132 S23: -2.2198 REMARK 3 S31: 1.5497 S32: 0.0178 S33: -3.9575 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 66:163) REMARK 3 ORIGIN FOR THE GROUP (A): 73.6033 75.9128 31.4822 REMARK 3 T TENSOR REMARK 3 T11: 0.6674 T22: 0.5093 REMARK 3 T33: 0.8691 T12: -0.0217 REMARK 3 T13: 0.0506 T23: 0.0441 REMARK 3 L TENSOR REMARK 3 L11: 2.9147 L22: 2.5999 REMARK 3 L33: 4.5624 L12: 2.4722 REMARK 3 L13: -1.6635 L23: 1.4648 REMARK 3 S TENSOR REMARK 3 S11: -0.4990 S12: 0.1507 S13: -0.6310 REMARK 3 S21: -0.1434 S22: 0.2680 S23: 0.5074 REMARK 3 S31: 0.6608 S32: -0.2054 S33: 0.2198 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 164:216) REMARK 3 ORIGIN FOR THE GROUP (A): 86.5870 77.3443 43.3157 REMARK 3 T TENSOR REMARK 3 T11: 0.7211 T22: 0.6220 REMARK 3 T33: 0.7618 T12: 0.0919 REMARK 3 T13: -0.0207 T23: 0.0577 REMARK 3 L TENSOR REMARK 3 L11: 5.0393 L22: 5.7594 REMARK 3 L33: 1.6106 L12: 2.3673 REMARK 3 L13: 3.1857 L23: -0.5410 REMARK 3 S TENSOR REMARK 3 S11: 0.0389 S12: -0.1860 S13: -1.0785 REMARK 3 S21: 0.7222 S22: -0.3258 S23: -0.5724 REMARK 3 S31: 0.3164 S32: -0.0464 S33: 0.2451 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 217:284) REMARK 3 ORIGIN FOR THE GROUP (A): 78.1351 104.8118 42.3369 REMARK 3 T TENSOR REMARK 3 T11: 0.4267 T22: 0.2971 REMARK 3 T33: 0.7031 T12: 0.0488 REMARK 3 T13: -0.0340 T23: 0.1315 REMARK 3 L TENSOR REMARK 3 L11: 1.5159 L22: 2.5912 REMARK 3 L33: 1.9874 L12: -2.0645 REMARK 3 L13: -0.4583 L23: 2.2745 REMARK 3 S TENSOR REMARK 3 S11: -0.2026 S12: 0.1313 S13: -0.5199 REMARK 3 S21: -0.4262 S22: -0.0332 S23: 0.2330 REMARK 3 S31: -0.3663 S32: -0.2436 S33: 0.1737 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 285:302) REMARK 3 ORIGIN FOR THE GROUP (A): 91.9406 94.3099 7.2298 REMARK 3 T TENSOR REMARK 3 T11: 1.8681 T22: 1.2575 REMARK 3 T33: 0.6433 T12: 0.4128 REMARK 3 T13: -0.1732 T23: 0.0539 REMARK 3 L TENSOR REMARK 3 L11: 1.2854 L22: 3.6024 REMARK 3 L33: 7.3023 L12: -1.0548 REMARK 3 L13: -8.4898 L23: 2.1726 REMARK 3 S TENSOR REMARK 3 S11: -0.3666 S12: -1.9274 S13: 0.5806 REMARK 3 S21: 1.5058 S22: 1.2902 S23: 0.6195 REMARK 3 S31: 1.2685 S32: 2.6499 S33: -0.7093 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 303:311) REMARK 3 ORIGIN FOR THE GROUP (A): 104.6450 96.9035 -6.9620 REMARK 3 T TENSOR REMARK 3 T11: 1.1739 T22: 2.5179 REMARK 3 T33: 0.6795 T12: 0.4765 REMARK 3 T13: 0.0125 T23: -0.2390 REMARK 3 L TENSOR REMARK 3 L11: 8.0942 L22: 5.0016 REMARK 3 L33: -2.5461 L12: 1.4977 REMARK 3 L13: -3.7673 L23: -1.3714 REMARK 3 S TENSOR REMARK 3 S11: 1.5581 S12: 1.4668 S13: 0.0368 REMARK 3 S21: -1.6392 S22: -2.0605 S23: -0.1713 REMARK 3 S31: 1.9378 S32: 3.6264 S33: 0.5745 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TLS REFINEMENT WAS INCLUDED REMARK 4 REMARK 4 3IHR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054426. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949, 0.97973 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15698 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.1 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 52.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP, DM 5.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TOTAL VOLUME 4 UL; 5 MG/ML UCH37, 1.3 REMARK 280 M SODIUM FORMATE, 100 MM TRIS, 2.5 MM BISTRIS, 0.15 MM TCEP, PH REMARK 280 8.5, HANGING DROP, BATCH, TEMPERATURE 277K, VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.04600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.36800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 77.03050 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.04600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.36800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.03050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.04600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.36800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.03050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.04600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.36800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 77.03050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A TETRAMER GENERATED FROM THE MONOMER IN REMARK 300 THE ASYMMETRIC UNIT BY THE OPERATIONS 1; 2 X,0,0; 2 0,Y,0; 2 0,0,Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 180.18400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 197.47200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 180.18400 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 197.47200 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 ASN A 4 REMARK 465 ALA A 5 REMARK 465 GLY A 6 REMARK 465 ARG A 145 REMARK 465 GLN A 146 REMARK 465 GLN A 147 REMARK 465 MSE A 148 REMARK 465 PHE A 149 REMARK 465 GLU A 150 REMARK 465 PHE A 151 REMARK 465 ASP A 152 REMARK 465 THR A 153 REMARK 465 LYS A 154 REMARK 465 THR A 155 REMARK 465 SER A 156 REMARK 465 ALA A 157 REMARK 465 LYS A 158 REMARK 465 GLU A 159 REMARK 465 GLU A 160 REMARK 465 ASP A 161 REMARK 465 THR A 249 REMARK 465 ASP A 250 REMARK 465 GLN A 251 REMARK 465 GLY A 252 REMARK 465 ASN A 253 REMARK 465 SER A 254 REMARK 465 VAL A 312 REMARK 465 GLU A 313 REMARK 465 LYS A 314 REMARK 465 ALA A 315 REMARK 465 LYS A 316 REMARK 465 GLU A 317 REMARK 465 LYS A 318 REMARK 465 GLN A 319 REMARK 465 ASN A 320 REMARK 465 ALA A 321 REMARK 465 LYS A 322 REMARK 465 LYS A 323 REMARK 465 ALA A 324 REMARK 465 GLN A 325 REMARK 465 GLU A 326 REMARK 465 THR A 327 REMARK 465 LYS A 328 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 211 N GLU A 215 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 56 -176.81 175.01 REMARK 500 PRO A 64 170.87 -49.99 REMARK 500 ALA A 65 8.41 -153.10 REMARK 500 VAL A 68 160.72 -48.89 REMARK 500 ASP A 71 -176.44 -62.20 REMARK 500 SER A 142 13.83 -69.80 REMARK 500 ARG A 182 -167.87 -117.95 REMARK 500 ASP A 195 86.40 -162.22 REMARK 500 SER A 212 -39.76 -31.04 REMARK 500 HIS A 289 56.56 -147.58 REMARK 500 GLU A 297 -3.26 -57.83 REMARK 500 LEU A 298 -64.47 -90.63 REMARK 500 THR A 301 44.61 -87.09 REMARK 500 LEU A 302 -4.23 -144.77 REMARK 500 HIS A 305 -76.98 -133.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 331 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 75 O REMARK 620 2 GLN A 119 O 170.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 329 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 331 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.41296 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN SEQUENCE MATCHES UNP ENTRY Q9Y5K5 ISOFORM 3 Q9Y5K5-3, REMARK 999 AND DOES NOT MATCH THE ISOFORM 1. DBREF 3IHR A 1 328 UNP Q9Y5K5 UCHL5_HUMAN 1 328 SEQADV 3IHR SER A 1 UNP Q9Y5K5 MET 1 ENGINEERED MUTATION SEQRES 1 A 328 SER THR GLY ASN ALA GLY GLU TRP CYS LEU MSE GLU SER SEQRES 2 A 328 ASP PRO GLY VAL PHE THR GLU LEU ILE LYS GLY PHE GLY SEQRES 3 A 328 CYS ARG GLY ALA GLN VAL GLU GLU ILE TRP SER LEU GLU SEQRES 4 A 328 PRO GLU ASN PHE GLU LYS LEU LYS PRO VAL HIS GLY LEU SEQRES 5 A 328 ILE PHE LEU PHE LYS TRP GLN PRO GLY GLU GLU PRO ALA SEQRES 6 A 328 GLY SER VAL VAL GLN ASP SER ARG LEU ASP THR ILE PHE SEQRES 7 A 328 PHE ALA LYS GLN VAL ILE ASN ASN ALA CYS ALA THR GLN SEQRES 8 A 328 ALA ILE VAL SER VAL LEU LEU ASN CYS THR HIS GLN ASP SEQRES 9 A 328 VAL HIS LEU GLY GLU THR LEU SER GLU PHE LYS GLU PHE SEQRES 10 A 328 SER GLN SER PHE ASP ALA ALA MSE LYS GLY LEU ALA LEU SEQRES 11 A 328 SER ASN SER ASP VAL ILE ARG GLN VAL HIS ASN SER PHE SEQRES 12 A 328 ALA ARG GLN GLN MSE PHE GLU PHE ASP THR LYS THR SER SEQRES 13 A 328 ALA LYS GLU GLU ASP ALA PHE HIS PHE VAL SER TYR VAL SEQRES 14 A 328 PRO VAL ASN GLY ARG LEU TYR GLU LEU ASP GLY LEU ARG SEQRES 15 A 328 GLU GLY PRO ILE ASP LEU GLY ALA CYS ASN GLN ASP ASP SEQRES 16 A 328 TRP ILE SER ALA VAL ARG PRO VAL ILE GLU LYS ARG ILE SEQRES 17 A 328 GLN LYS TYR SER GLU GLY GLU ILE ARG PHE ASN LEU MSE SEQRES 18 A 328 ALA ILE VAL SER ASP ARG LYS MSE ILE TYR GLU GLN LYS SEQRES 19 A 328 ILE ALA GLU LEU GLN ARG GLN LEU ALA GLU GLU PRO MSE SEQRES 20 A 328 ASP THR ASP GLN GLY ASN SER MSE LEU SER ALA ILE GLN SEQRES 21 A 328 SER GLU VAL ALA LYS ASN GLN MSE LEU ILE GLU GLU GLU SEQRES 22 A 328 VAL GLN LYS LEU LYS ARG TYR LYS ILE GLU ASN ILE ARG SEQRES 23 A 328 ARG LYS HIS ASN TYR LEU PRO PHE ILE MSE GLU LEU LEU SEQRES 24 A 328 LYS THR LEU ALA GLU HIS GLN GLN LEU ILE PRO LEU VAL SEQRES 25 A 328 GLU LYS ALA LYS GLU LYS GLN ASN ALA LYS LYS ALA GLN SEQRES 26 A 328 GLU THR LYS MODRES 3IHR MSE A 11 MET SELENOMETHIONINE MODRES 3IHR MSE A 125 MET SELENOMETHIONINE MODRES 3IHR MSE A 221 MET SELENOMETHIONINE MODRES 3IHR MSE A 229 MET SELENOMETHIONINE MODRES 3IHR MSE A 247 MET SELENOMETHIONINE MODRES 3IHR MSE A 255 MET SELENOMETHIONINE MODRES 3IHR MSE A 268 MET SELENOMETHIONINE MODRES 3IHR MSE A 296 MET SELENOMETHIONINE HET MSE A 11 8 HET MSE A 125 8 HET MSE A 221 8 HET MSE A 229 8 HET MSE A 247 8 HET MSE A 255 8 HET MSE A 268 8 HET MSE A 296 8 HET FMT A 329 3 HET FMT A 330 3 HET NA A 331 1 HETNAM MSE SELENOMETHIONINE HETNAM FMT FORMIC ACID HETNAM NA SODIUM ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 FMT 2(C H2 O2) FORMUL 4 NA NA 1+ FORMUL 5 HOH *10(H2 O) HELIX 1 1 ASP A 14 GLY A 26 1 13 HELIX 2 2 GLU A 39 LYS A 45 1 7 HELIX 3 3 ILE A 84 ASN A 86 5 3 HELIX 4 4 ALA A 87 ASN A 99 1 13 HELIX 5 5 LEU A 107 GLN A 119 1 13 HELIX 6 6 ASP A 122 ASN A 132 1 11 HELIX 7 7 SER A 133 SER A 142 1 10 HELIX 8 8 TRP A 196 GLU A 215 1 20 HELIX 9 9 ASP A 226 GLU A 245 1 20 HELIX 10 10 MSE A 255 LYS A 288 1 34 HELIX 11 11 TYR A 291 LYS A 300 1 10 HELIX 12 12 THR A 301 ALA A 303 5 3 SHEET 1 A 7 ALA A 30 GLU A 34 0 SHEET 2 A 7 PHE A 218 SER A 225 -1 O ALA A 222 N GLU A 33 SHEET 3 A 7 VAL A 49 LYS A 57 -1 N HIS A 50 O ILE A 223 SHEET 4 A 7 PHE A 163 VAL A 171 -1 O VAL A 166 N PHE A 54 SHEET 5 A 7 ARG A 174 LEU A 178 -1 O LEU A 178 N SER A 167 SHEET 6 A 7 ILE A 186 ALA A 190 -1 O LEU A 188 N LEU A 175 SHEET 7 A 7 SER A 67 VAL A 68 -1 N SER A 67 O ASP A 187 LINK C LEU A 10 N MSE A 11 1555 1555 1.33 LINK C MSE A 11 N GLU A 12 1555 1555 1.33 LINK C ALA A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N LYS A 126 1555 1555 1.33 LINK C LEU A 220 N MSE A 221 1555 1555 1.33 LINK C MSE A 221 N ALA A 222 1555 1555 1.33 LINK C LYS A 228 N MSE A 229 1555 1555 1.32 LINK C MSE A 229 N ILE A 230 1555 1555 1.32 LINK C PRO A 246 N MSE A 247 1555 1555 1.33 LINK C MSE A 247 N ASP A 248 1555 1555 1.33 LINK C MSE A 255 N LEU A 256 1555 1555 1.33 LINK C GLN A 267 N MSE A 268 1555 1555 1.33 LINK C MSE A 268 N LEU A 269 1555 1555 1.33 LINK C ILE A 295 N MSE A 296 1555 1555 1.33 LINK C MSE A 296 N GLU A 297 1555 1555 1.33 LINK O ASP A 75 NA NA A 331 1555 1555 2.00 LINK O GLN A 119 NA NA A 331 1555 1555 2.32 CISPEP 1 LYS A 47 PRO A 48 0 0.42 CISPEP 2 PRO A 64 ALA A 65 0 -3.45 SITE 1 AC1 2 ALA A 80 SER A 95 SITE 1 AC2 5 TRP A 36 SER A 37 LEU A 38 LYS A 265 SITE 2 AC2 5 MSE A 268 SITE 1 AC3 2 ASP A 75 GLN A 119 CRYST1 90.092 98.736 154.061 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011100 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010128 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006491 0.00000