HEADER TRANSCRIPTION REGULATOR 30-JUL-09 3IHU TITLE CRYSTAL STRUCTURE OF DNA BINDING PROTEIN (YP_298823.1) FROM RALSTONIA TITLE 2 EUTROPHA JMP134 AT 1.92 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, GNTR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RALSTONIA EUTROPHA; SOURCE 3 ORGANISM_TAXID: 264198; SOURCE 4 STRAIN: JMP134; SOURCE 5 GENE: REUT_B4629, YP_298823.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_298823.1, DNA BINDING PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 DNA-BINDING, TRANSCRIPTION, TRANSCRIPTION REGULATION, FCD DOMAIN, KEYWDS 4 TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3IHU 1 REMARK SEQADV REVDAT 4 24-JUL-19 3IHU 1 REMARK LINK REVDAT 3 25-OCT-17 3IHU 1 REMARK REVDAT 2 13-JUL-11 3IHU 1 VERSN REVDAT 1 11-AUG-09 3IHU 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF DNA BINDING PROTEIN (YP_298823.1) FROM JRNL TITL 2 RALSTONIA EUTROPHA JMP134 AT 1.92 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 32709 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1662 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2287 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3117 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 202 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 34.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.53000 REMARK 3 B22 (A**2) : -1.30000 REMARK 3 B33 (A**2) : -0.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.65000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.172 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.003 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3267 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2262 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4431 ; 1.489 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5459 ; 0.967 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 437 ; 4.953 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;32.627 ;22.222 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 570 ;14.736 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;17.537 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 510 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3745 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 714 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2066 ; 0.870 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 853 ; 0.232 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3298 ; 1.547 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1201 ; 2.582 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1118 ; 4.134 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 219 REMARK 3 ORIGIN FOR THE GROUP (A): -6.7350 3.4130 35.4010 REMARK 3 T TENSOR REMARK 3 T11: 0.1471 T22: 0.2321 REMARK 3 T33: 0.1967 T12: 0.0373 REMARK 3 T13: -0.0325 T23: -0.0553 REMARK 3 L TENSOR REMARK 3 L11: 1.1021 L22: 2.5557 REMARK 3 L33: 1.4400 L12: 0.4437 REMARK 3 L13: -0.7188 L23: -1.5752 REMARK 3 S TENSOR REMARK 3 S11: 0.1326 S12: -0.0449 S13: -0.0564 REMARK 3 S21: -0.0841 S22: -0.0726 S23: 0.1512 REMARK 3 S31: 0.0347 S32: -0.1573 S33: -0.0600 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 15 B 218 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0660 -7.6660 16.1670 REMARK 3 T TENSOR REMARK 3 T11: 0.2643 T22: 0.2088 REMARK 3 T33: 0.1797 T12: 0.1912 REMARK 3 T13: 0.0679 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 1.7978 L22: 1.4151 REMARK 3 L33: 2.2351 L12: 0.6634 REMARK 3 L13: 1.2107 L23: 0.4855 REMARK 3 S TENSOR REMARK 3 S11: 0.0221 S12: 0.1735 S13: -0.1084 REMARK 3 S21: -0.3400 S22: -0.0184 S23: -0.1792 REMARK 3 S31: 0.0182 S32: -0.0291 S33: -0.0036 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. CHLORIDE REMARK 3 ION AND GLYCEROL MOLECULE FROM THE CRYSTALLIZATION/ REMARK 3 CRYOPROTECTION SOLUTIONS ARE MODELED. REMARK 4 REMARK 4 3IHU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054429. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.17 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97862,0.97799 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32709 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 29.361 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : 0.05200 REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.55600 REMARK 200 R SYM FOR SHELL (I) : 0.55600 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24.0000% POLYETHYLENE GLYCOL 6000, REMARK 280 1.0000M LITHIUM CHLORIDE, 0.1M TRIS PH 8.17, NANODROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 27.32300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.56750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 27.32300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.56750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE REMARK 300 ASSIGNMENT OF A MONOMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN REMARK 300 SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 PRO A 2 REMARK 465 ILE A 3 REMARK 465 ASP A 4 REMARK 465 THR A 5 REMARK 465 PRO A 6 REMARK 465 THR A 7 REMARK 465 ASP A 8 REMARK 465 ALA A 9 REMARK 465 SER A 10 REMARK 465 PRO A 11 REMARK 465 ALA A 12 REMARK 465 ASP A 13 REMARK 465 GLY A 14 REMARK 465 PRO A 220 REMARK 465 ALA A 221 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 PRO B 2 REMARK 465 ILE B 3 REMARK 465 ASP B 4 REMARK 465 THR B 5 REMARK 465 PRO B 6 REMARK 465 THR B 7 REMARK 465 ASP B 8 REMARK 465 ALA B 9 REMARK 465 SER B 10 REMARK 465 PRO B 11 REMARK 465 ALA B 12 REMARK 465 ASP B 13 REMARK 465 GLY B 14 REMARK 465 GLN B 219 REMARK 465 PRO B 220 REMARK 465 ALA B 221 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 60 CG CD OE1 NE2 REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 154 CZ NH1 NH2 REMARK 470 ARG A 158 NH1 NH2 REMARK 470 ARG A 173 NE CZ NH1 NH2 REMARK 470 ARG B 52 CD NE CZ NH1 NH2 REMARK 470 ARG B 72 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 106 NE CZ NH1 NH2 REMARK 470 ARG B 173 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 226 O HOH B 296 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 38 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 LEU A 159 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 73 -57.84 78.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 224 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 383474 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3IHU A 1 221 UNP Q46SA5 Q46SA5_RALEJ 1 221 DBREF 3IHU B 1 221 UNP Q46SA5 Q46SA5_RALEJ 1 221 SEQADV 3IHU GLY A 0 UNP Q46SA5 EXPRESSION TAG SEQADV 3IHU GLY B 0 UNP Q46SA5 EXPRESSION TAG SEQRES 1 A 222 GLY MSE PRO ILE ASP THR PRO THR ASP ALA SER PRO ALA SEQRES 2 A 222 ASP GLY SER ALA SER ASP THR VAL PHE PHE GLY ILE MSE SEQRES 3 A 222 SER GLY LEU GLU LEU GLY THR PHE VAL PRO GLY GLN ARG SEQRES 4 A 222 LEU VAL GLU THR ASP LEU VAL ALA HIS PHE GLY VAL GLY SEQRES 5 A 222 ARG ASN SER VAL ARG GLU ALA LEU GLN ARG LEU ALA ALA SEQRES 6 A 222 GLU GLY ILE VAL ASP LEU GLN ARG HIS ARG GLY ALA VAL SEQRES 7 A 222 ILE ARG ARG LEU SER LEU GLN GLU THR LEU ASP VAL LEU SEQRES 8 A 222 ASP VAL ALA GLU ARG MSE THR GLY LEU LEU ALA ARG ALA SEQRES 9 A 222 ALA THR ARG GLY SER GLY ASN GLN PRO GLN VAL GLN ALA SEQRES 10 A 222 LEU ARG ALA SER VAL GLN ALA LEU VAL ALA ALA GLU LYS SEQRES 11 A 222 ALA GLN ASP GLY GLU THR PHE SER ASN ALA ARG ARG HIS SEQRES 12 A 222 PHE TYR ARG THR LEU LEU GLU MSE GLY ASP ASN ARG GLU SEQRES 13 A 222 LEU ARG ARG LEU PHE PRO THR ILE HIS MSE PRO ILE VAL SEQRES 14 A 222 HIS ALA GLN HIS ARG LEU ALA SER LEU ARG GLN MSE ARG SEQRES 15 A 222 LEU ASP ASP TYR ARG ARG ILE ALA THR ALA VAL LEU ALA SEQRES 16 A 222 GLY GLU PRO ASP ALA ALA GLU ALA ALA GLY ALA ALA HIS SEQRES 17 A 222 VAL LYS ASN VAL ARG GLY ALA ILE LEU ASP ARG GLN PRO SEQRES 18 A 222 ALA SEQRES 1 B 222 GLY MSE PRO ILE ASP THR PRO THR ASP ALA SER PRO ALA SEQRES 2 B 222 ASP GLY SER ALA SER ASP THR VAL PHE PHE GLY ILE MSE SEQRES 3 B 222 SER GLY LEU GLU LEU GLY THR PHE VAL PRO GLY GLN ARG SEQRES 4 B 222 LEU VAL GLU THR ASP LEU VAL ALA HIS PHE GLY VAL GLY SEQRES 5 B 222 ARG ASN SER VAL ARG GLU ALA LEU GLN ARG LEU ALA ALA SEQRES 6 B 222 GLU GLY ILE VAL ASP LEU GLN ARG HIS ARG GLY ALA VAL SEQRES 7 B 222 ILE ARG ARG LEU SER LEU GLN GLU THR LEU ASP VAL LEU SEQRES 8 B 222 ASP VAL ALA GLU ARG MSE THR GLY LEU LEU ALA ARG ALA SEQRES 9 B 222 ALA THR ARG GLY SER GLY ASN GLN PRO GLN VAL GLN ALA SEQRES 10 B 222 LEU ARG ALA SER VAL GLN ALA LEU VAL ALA ALA GLU LYS SEQRES 11 B 222 ALA GLN ASP GLY GLU THR PHE SER ASN ALA ARG ARG HIS SEQRES 12 B 222 PHE TYR ARG THR LEU LEU GLU MSE GLY ASP ASN ARG GLU SEQRES 13 B 222 LEU ARG ARG LEU PHE PRO THR ILE HIS MSE PRO ILE VAL SEQRES 14 B 222 HIS ALA GLN HIS ARG LEU ALA SER LEU ARG GLN MSE ARG SEQRES 15 B 222 LEU ASP ASP TYR ARG ARG ILE ALA THR ALA VAL LEU ALA SEQRES 16 B 222 GLY GLU PRO ASP ALA ALA GLU ALA ALA GLY ALA ALA HIS SEQRES 17 B 222 VAL LYS ASN VAL ARG GLY ALA ILE LEU ASP ARG GLN PRO SEQRES 18 B 222 ALA MODRES 3IHU MSE A 25 MET SELENOMETHIONINE MODRES 3IHU MSE A 96 MET SELENOMETHIONINE MODRES 3IHU MSE A 150 MET SELENOMETHIONINE MODRES 3IHU MSE A 165 MET SELENOMETHIONINE MODRES 3IHU MSE A 180 MET SELENOMETHIONINE MODRES 3IHU MSE B 25 MET SELENOMETHIONINE MODRES 3IHU MSE B 96 MET SELENOMETHIONINE MODRES 3IHU MSE B 150 MET SELENOMETHIONINE MODRES 3IHU MSE B 165 MET SELENOMETHIONINE MODRES 3IHU MSE B 180 MET SELENOMETHIONINE HET MSE A 25 8 HET MSE A 96 8 HET MSE A 150 8 HET MSE A 165 13 HET MSE A 180 13 HET MSE B 25 13 HET MSE B 96 8 HET MSE B 150 8 HET MSE B 165 8 HET MSE B 180 8 HET CL B 222 1 HET CL B 223 1 HET GOL B 224 6 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 CL 2(CL 1-) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *202(H2 O) HELIX 1 1 SER A 15 GLY A 31 1 17 HELIX 2 2 VAL A 40 GLY A 49 1 10 HELIX 3 3 GLY A 51 GLU A 65 1 15 HELIX 4 4 SER A 82 THR A 105 1 24 HELIX 5 5 ARG A 106 SER A 108 5 3 HELIX 6 6 ASN A 110 ALA A 130 1 21 HELIX 7 7 ASP A 132 ASP A 152 1 21 HELIX 8 8 ASN A 153 MSE A 165 1 13 HELIX 9 9 MSE A 165 HIS A 172 1 8 HELIX 10 10 ARG A 173 SER A 176 5 4 HELIX 11 11 LEU A 177 GLY A 195 1 19 HELIX 12 12 GLU A 196 GLN A 219 1 24 HELIX 13 13 SER B 15 LEU B 30 1 16 HELIX 14 14 VAL B 40 GLY B 49 1 10 HELIX 15 15 GLY B 51 GLU B 65 1 15 HELIX 16 16 SER B 82 THR B 105 1 24 HELIX 17 17 ARG B 106 SER B 108 5 3 HELIX 18 18 ASN B 110 GLN B 131 1 22 HELIX 19 19 ASP B 132 ASP B 152 1 21 HELIX 20 20 ASN B 153 LEU B 159 1 7 HELIX 21 21 PHE B 160 HIS B 164 5 5 HELIX 22 22 MSE B 165 HIS B 172 1 8 HELIX 23 23 ARG B 173 SER B 176 5 4 HELIX 24 24 LEU B 177 GLY B 195 1 19 HELIX 25 25 GLU B 196 ARG B 218 1 23 SHEET 1 A 3 ARG A 38 LEU A 39 0 SHEET 2 A 3 ALA A 76 ILE A 78 -1 O ALA A 76 N LEU A 39 SHEET 3 A 3 VAL A 68 LEU A 70 -1 N ASP A 69 O VAL A 77 SHEET 1 B 3 ARG B 38 LEU B 39 0 SHEET 2 B 3 ALA B 76 ILE B 78 -1 O ALA B 76 N LEU B 39 SHEET 3 B 3 VAL B 68 LEU B 70 -1 N ASP B 69 O VAL B 77 LINK C ILE A 24 N MSE A 25 1555 1555 1.31 LINK C MSE A 25 N SER A 26 1555 1555 1.32 LINK C ARG A 95 N MSE A 96 1555 1555 1.34 LINK C MSE A 96 N THR A 97 1555 1555 1.32 LINK C GLU A 149 N MSE A 150 1555 1555 1.32 LINK C MSE A 150 N GLY A 151 1555 1555 1.35 LINK C HIS A 164 N MSE A 165 1555 1555 1.34 LINK C MSE A 165 N PRO A 166 1555 1555 1.34 LINK C GLN A 179 N MSE A 180 1555 1555 1.34 LINK C MSE A 180 N ARG A 181 1555 1555 1.33 LINK C ILE B 24 N MSE B 25 1555 1555 1.33 LINK C MSE B 25 N SER B 26 1555 1555 1.32 LINK C ARG B 95 N MSE B 96 1555 1555 1.33 LINK C MSE B 96 N THR B 97 1555 1555 1.32 LINK C GLU B 149 N MSE B 150 1555 1555 1.33 LINK C MSE B 150 N GLY B 151 1555 1555 1.33 LINK C HIS B 164 N MSE B 165 1555 1555 1.30 LINK C MSE B 165 N PRO B 166 1555 1555 1.35 LINK C GLN B 179 N MSE B 180 1555 1555 1.33 LINK C MSE B 180 N ARG B 181 1555 1555 1.33 SITE 1 AC1 6 MSE B 165 PRO B 166 ILE B 167 VAL B 168 SITE 2 AC1 6 GOL B 224 HOH B 273 SITE 1 AC2 3 GLU B 41 ARG B 74 GLY B 75 SITE 1 AC3 6 GLU A 155 PRO B 161 HIS B 164 CL B 222 SITE 2 AC3 6 HOH B 273 HOH B 279 CRYST1 54.646 79.135 103.244 90.00 102.08 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018299 0.000000 0.003917 0.00000 SCALE2 0.000000 0.012637 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009905 0.00000