HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 31-JUL-09 3II8 OBSLTE 16-JUN-10 3II8 3N3T TITLE CRYSTAL STRUCTURE OF PUTATIVE DIGUANYLATE CYCLASE/PHOSPHODIESTERASE TITLE 2 COMPLEX WITH CYCLI DI-GMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE DIGUANYLATE CYCLASE/PHOSPHODIESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THIOBACILLUS DENITRIFICANS ATCC 25259; SOURCE 3 ORGANISM_TAXID: 292415; SOURCE 4 STRAIN: ATCC 25259; SOURCE 5 GENE: TBD_1265, THIOBACILLUS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) DERIVATIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET DERIVATIVE KEYWDS THIOBACILLUS DENITRIFICANS, PUTATIVE DIGUANYLATE KEYWDS 2 CYCLASE/PHOSPHODIESTERASE (GGDEF & EAL DOMAINS), STRUCTURAL KEYWDS 3 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 4 STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,X.XU,H.CUI,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 16-JUN-10 3II8 1 OBSLTE REVDAT 2 06-OCT-09 3II8 1 HETATM REVDAT 1 18-AUG-09 3II8 0 JRNL AUTH C.CHANG,X.XU,H.CUI,A.SAVCHENKO,A.IAKOUNINE,A.EDWARDS, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE DIGUANYLATE JRNL TITL 2 CYCLASE/PHOSPHODIESTERASE COMPLEX WITH CYCLI DI-GMP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 24285 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1240 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1631 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4000 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 95 REMARK 3 SOLVENT ATOMS : 237 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.89000 REMARK 3 B22 (A**2) : -2.15000 REMARK 3 B33 (A**2) : -2.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.421 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.266 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.189 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.555 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4214 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5744 ; 1.630 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 529 ; 5.823 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 192 ;35.055 ;23.177 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 696 ;17.632 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;17.901 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 663 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3176 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2612 ; 0.691 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4177 ; 1.336 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1602 ; 2.358 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1566 ; 3.897 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 489 A 503 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2236 39.4976 34.0215 REMARK 3 T TENSOR REMARK 3 T11: 0.0744 T22: 0.0871 REMARK 3 T33: 0.0504 T12: -0.0076 REMARK 3 T13: 0.0311 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 9.3755 L22: 1.6215 REMARK 3 L33: 5.5986 L12: -2.4734 REMARK 3 L13: 0.4565 L23: 0.0527 REMARK 3 S TENSOR REMARK 3 S11: 0.2277 S12: -0.1221 S13: 0.2744 REMARK 3 S21: -0.0679 S22: 0.0831 S23: -0.2214 REMARK 3 S31: -0.3691 S32: 0.2760 S33: -0.3108 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 504 A 527 REMARK 3 ORIGIN FOR THE GROUP (A): -6.0298 39.6205 48.2745 REMARK 3 T TENSOR REMARK 3 T11: 0.0638 T22: 0.0532 REMARK 3 T33: 0.0300 T12: -0.0022 REMARK 3 T13: 0.0064 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 4.2465 L22: 0.8638 REMARK 3 L33: 3.1216 L12: -0.6998 REMARK 3 L13: -3.1208 L23: 0.1256 REMARK 3 S TENSOR REMARK 3 S11: -0.1653 S12: 0.0451 S13: -0.2523 REMARK 3 S21: -0.0090 S22: 0.0420 S23: 0.1456 REMARK 3 S31: -0.0455 S32: -0.0879 S33: 0.1233 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 528 A 547 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4785 33.4131 38.8840 REMARK 3 T TENSOR REMARK 3 T11: 0.0654 T22: 0.0293 REMARK 3 T33: 0.0600 T12: 0.0222 REMARK 3 T13: -0.0101 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 4.1967 L22: 4.5481 REMARK 3 L33: 4.4568 L12: 1.6241 REMARK 3 L13: -0.7891 L23: 2.2365 REMARK 3 S TENSOR REMARK 3 S11: 0.1037 S12: -0.0088 S13: -0.2496 REMARK 3 S21: 0.1050 S22: -0.1520 S23: -0.3507 REMARK 3 S31: 0.1540 S32: 0.0471 S33: 0.0483 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 548 A 663 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3748 47.2840 54.6592 REMARK 3 T TENSOR REMARK 3 T11: 0.0652 T22: 0.0188 REMARK 3 T33: 0.0097 T12: -0.0292 REMARK 3 T13: -0.0162 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.7272 L22: 1.5070 REMARK 3 L33: 1.4720 L12: -0.0153 REMARK 3 L13: -0.0540 L23: -0.7337 REMARK 3 S TENSOR REMARK 3 S11: -0.0255 S12: -0.0300 S13: 0.0246 REMARK 3 S21: 0.0958 S22: -0.0569 S23: -0.1027 REMARK 3 S31: -0.2957 S32: 0.1543 S33: 0.0824 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 664 A 743 REMARK 3 ORIGIN FOR THE GROUP (A): -7.7625 32.2288 58.4150 REMARK 3 T TENSOR REMARK 3 T11: 0.0128 T22: 0.0131 REMARK 3 T33: 0.0489 T12: -0.0016 REMARK 3 T13: 0.0102 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.1797 L22: 0.4108 REMARK 3 L33: 2.7875 L12: -0.1899 REMARK 3 L13: 1.2620 L23: -0.4470 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: -0.0580 S13: -0.1267 REMARK 3 S21: -0.0117 S22: -0.0004 S23: 0.0839 REMARK 3 S31: 0.1044 S32: -0.0999 S33: 0.0005 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 489 B 503 REMARK 3 ORIGIN FOR THE GROUP (A): 35.1320 28.2152 94.1512 REMARK 3 T TENSOR REMARK 3 T11: 0.0264 T22: 0.0518 REMARK 3 T33: 0.1106 T12: 0.0120 REMARK 3 T13: -0.0122 T23: -0.0534 REMARK 3 L TENSOR REMARK 3 L11: 5.5971 L22: 4.4122 REMARK 3 L33: 9.3585 L12: 0.1795 REMARK 3 L13: -3.3890 L23: -5.7769 REMARK 3 S TENSOR REMARK 3 S11: 0.1924 S12: -0.2896 S13: 0.0892 REMARK 3 S21: -0.2582 S22: -0.2095 S23: -0.0840 REMARK 3 S31: 0.2311 S32: 0.4525 S33: 0.0172 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 504 B 527 REMARK 3 ORIGIN FOR THE GROUP (A): 9.8226 29.9915 98.4894 REMARK 3 T TENSOR REMARK 3 T11: 0.0534 T22: 0.0841 REMARK 3 T33: 0.0128 T12: 0.0014 REMARK 3 T13: 0.0024 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 2.7727 L22: 1.2758 REMARK 3 L33: 0.9490 L12: 0.2425 REMARK 3 L13: 0.0713 L23: -1.0639 REMARK 3 S TENSOR REMARK 3 S11: -0.0322 S12: 0.0219 S13: 0.0684 REMARK 3 S21: 0.1144 S22: 0.0653 S23: 0.0470 REMARK 3 S31: -0.0630 S32: -0.0564 S33: -0.0331 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 528 B 547 REMARK 3 ORIGIN FOR THE GROUP (A): 28.6127 34.9248 93.6018 REMARK 3 T TENSOR REMARK 3 T11: 0.0471 T22: 0.1069 REMARK 3 T33: 0.2109 T12: -0.0629 REMARK 3 T13: -0.0113 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 8.4917 L22: 5.5096 REMARK 3 L33: 3.8271 L12: -2.8383 REMARK 3 L13: -3.4152 L23: -0.6155 REMARK 3 S TENSOR REMARK 3 S11: 0.0364 S12: -0.2292 S13: 0.3711 REMARK 3 S21: 0.0921 S22: 0.0134 S23: -0.6772 REMARK 3 S31: -0.3253 S32: 0.4625 S33: -0.0498 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 548 B 663 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1046 20.9800 86.8547 REMARK 3 T TENSOR REMARK 3 T11: 0.0139 T22: 0.0301 REMARK 3 T33: 0.0338 T12: -0.0063 REMARK 3 T13: 0.0039 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.7431 L22: 1.1432 REMARK 3 L33: 1.1576 L12: -0.2191 REMARK 3 L13: 0.4004 L23: 0.1729 REMARK 3 S TENSOR REMARK 3 S11: 0.0137 S12: 0.0657 S13: -0.0862 REMARK 3 S21: -0.0168 S22: -0.0249 S23: -0.0583 REMARK 3 S31: 0.1027 S32: 0.0309 S33: 0.0112 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 664 B 743 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6731 36.9452 91.6122 REMARK 3 T TENSOR REMARK 3 T11: 0.0166 T22: 0.0573 REMARK 3 T33: 0.0361 T12: 0.0104 REMARK 3 T13: -0.0107 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 0.4572 L22: 0.2982 REMARK 3 L33: 2.2047 L12: 0.1076 REMARK 3 L13: 0.3527 L23: 0.0274 REMARK 3 S TENSOR REMARK 3 S11: -0.0107 S12: -0.1239 S13: 0.0683 REMARK 3 S21: -0.0266 S22: 0.0199 S23: 0.0320 REMARK 3 S31: -0.1128 S32: -0.1859 S33: -0.0093 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3II8 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-09. REMARK 100 THE RCSB ID CODE IS RCSB054443. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24433 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.45900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL3000, SHLEXD, SHELXE, MLPHARE, DM, RESOLVE, REMARK 200 COOT, WARP/ARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: O.2 M MAGNESIUM CHLORIDE, 25% PEG3350, REMARK 280 0.1M BIS-TRIS, 2.5MM CYCLIC DI-GMP, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.78000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.99350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.60050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 86.99350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.78000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.60050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 465 REMARK 465 GLY A 466 REMARK 465 SER A 467 REMARK 465 SER A 468 REMARK 465 HIS A 469 REMARK 465 HIS A 470 REMARK 465 HIS A 471 REMARK 465 HIS A 472 REMARK 465 HIS A 473 REMARK 465 HIS A 474 REMARK 465 SER A 475 REMARK 465 SER A 476 REMARK 465 GLY A 477 REMARK 465 ARG A 478 REMARK 465 GLU A 479 REMARK 465 ASN A 480 REMARK 465 LEU A 481 REMARK 465 TYR A 482 REMARK 465 PHE A 483 REMARK 465 GLN A 484 REMARK 465 GLY A 485 REMARK 465 HIS A 486 REMARK 465 GLY A 747 REMARK 465 GLN A 748 REMARK 465 ARG A 749 REMARK 465 PRO A 750 REMARK 465 VAL A 751 REMARK 465 HIS A 752 REMARK 465 GLY A 753 REMARK 465 HIS A 754 REMARK 465 GLU A 755 REMARK 465 THR A 756 REMARK 465 ALA A 757 REMARK 465 PRO A 758 REMARK 465 MSE B 465 REMARK 465 GLY B 466 REMARK 465 SER B 467 REMARK 465 SER B 468 REMARK 465 HIS B 469 REMARK 465 HIS B 470 REMARK 465 HIS B 471 REMARK 465 HIS B 472 REMARK 465 HIS B 473 REMARK 465 HIS B 474 REMARK 465 SER B 475 REMARK 465 SER B 476 REMARK 465 GLY B 477 REMARK 465 ARG B 478 REMARK 465 GLU B 479 REMARK 465 ASN B 480 REMARK 465 LEU B 481 REMARK 465 TYR B 482 REMARK 465 PHE B 483 REMARK 465 GLN B 484 REMARK 465 GLY B 485 REMARK 465 GLY B 747 REMARK 465 GLN B 748 REMARK 465 ARG B 749 REMARK 465 PRO B 750 REMARK 465 VAL B 751 REMARK 465 HIS B 752 REMARK 465 GLY B 753 REMARK 465 HIS B 754 REMARK 465 GLU B 755 REMARK 465 THR B 756 REMARK 465 ALA B 757 REMARK 465 PRO B 758 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 487 CG CD OE1 OE2 REMARK 470 ASP A 547 CG OD1 OD2 REMARK 470 ARG A 637 CG CD NE CZ NH1 NH2 REMARK 470 SER A 746 OG REMARK 470 HIS B 486 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 487 CG CD OE1 OE2 REMARK 470 ARG B 488 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 489 CG CD1 CD2 REMARK 470 THR B 490 OG1 CG2 REMARK 470 LEU B 491 CG CD1 CD2 REMARK 470 ASP B 492 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O11 C2E B 801 O HOH B 217 1.87 REMARK 500 O HOH B 195 O HOH B 200 2.11 REMARK 500 OE1 GLU B 703 O HOH B 217 2.13 REMARK 500 NH1 ARG A 527 O2P C2E A 801 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 107 O HOH A 116 3555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 655 CA - CB - CG ANGL. DEV. = -14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 541 -29.27 -140.62 REMARK 500 ARG A 588 -37.41 -38.20 REMARK 500 PRO A 662 36.30 -85.81 REMARK 500 SER A 728 133.00 -177.88 REMARK 500 SER B 728 129.13 -178.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 88 DISTANCE = 5.17 ANGSTROMS REMARK 525 HOH A 100 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH A 101 DISTANCE = 7.24 ANGSTROMS REMARK 525 HOH A 104 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH A 107 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 110 DISTANCE = 5.58 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 523 OE2 REMARK 620 2 ASN A 584 OD1 98.6 REMARK 620 3 GLU A 616 OE1 85.4 97.1 REMARK 620 4 ASP A 646 OD2 164.9 92.0 82.5 REMARK 620 5 HOH A 1 O 76.5 173.1 77.8 92.0 REMARK 620 6 C2E A 801 O21 92.0 96.1 166.8 97.7 88.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 523 OE2 REMARK 620 2 ASN B 584 OD1 86.6 REMARK 620 3 GLU B 616 OE1 95.5 92.0 REMARK 620 4 ASP B 646 OD2 159.1 78.8 99.8 REMARK 620 5 HOH B 221 O 85.7 166.0 100.3 105.3 REMARK 620 6 C2E B 801 O21 77.6 80.0 169.7 85.2 87.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2E A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2E B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 802 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2R6O RELATED DB: PDB REMARK 900 APO-PROTEIN REMARK 900 RELATED ID: APC7542 RELATED DB: TARGETDB DBREF 3II8 A 487 758 UNP Q3SJE6 Q3SJE6_THIDA 487 758 DBREF 3II8 B 487 758 UNP Q3SJE6 Q3SJE6_THIDA 487 758 SEQADV 3II8 MSE A 465 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 GLY A 466 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 SER A 467 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 SER A 468 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 HIS A 469 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 HIS A 470 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 HIS A 471 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 HIS A 472 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 HIS A 473 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 HIS A 474 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 SER A 475 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 SER A 476 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 GLY A 477 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 ARG A 478 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 GLU A 479 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 ASN A 480 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 LEU A 481 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 TYR A 482 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 PHE A 483 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 GLN A 484 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 GLY A 485 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 HIS A 486 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 MSE B 465 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 GLY B 466 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 SER B 467 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 SER B 468 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 HIS B 469 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 HIS B 470 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 HIS B 471 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 HIS B 472 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 HIS B 473 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 HIS B 474 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 SER B 475 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 SER B 476 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 GLY B 477 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 ARG B 478 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 GLU B 479 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 ASN B 480 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 LEU B 481 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 TYR B 482 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 PHE B 483 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 GLN B 484 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 GLY B 485 UNP Q3SJE6 EXPRESSION TAG SEQADV 3II8 HIS B 486 UNP Q3SJE6 EXPRESSION TAG SEQRES 1 A 294 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 294 ARG GLU ASN LEU TYR PHE GLN GLY HIS GLU ARG LEU THR SEQRES 3 A 294 LEU ASP THR ARG LEU ARG GLN ALA LEU GLU ARG ASN GLU SEQRES 4 A 294 LEU VAL LEU HIS TYR GLN PRO ILE VAL GLU LEU ALA SER SEQRES 5 A 294 GLY ARG ILE VAL GLY GLY GLU ALA LEU VAL ARG TRP GLU SEQRES 6 A 294 ASP PRO GLU ARG GLY LEU VAL MSE PRO SER ALA PHE ILE SEQRES 7 A 294 PRO ALA ALA GLU ASP THR GLY LEU ILE VAL ALA LEU SER SEQRES 8 A 294 ASP TRP VAL LEU GLU ALA CYS CYS THR GLN LEU ARG ALA SEQRES 9 A 294 TRP GLN GLN GLN GLY ARG ALA ALA ASP ASP LEU THR LEU SEQRES 10 A 294 SER VAL ASN ILE SER THR ARG GLN PHE GLU GLY GLU HIS SEQRES 11 A 294 LEU THR ARG ALA VAL ASP ARG ALA LEU ALA ARG SER GLY SEQRES 12 A 294 LEU ARG PRO ASP CYS LEU GLU LEU GLU ILE THR GLU ASN SEQRES 13 A 294 VAL MSE LEU VAL MSE THR ASP GLU VAL ARG THR CYS LEU SEQRES 14 A 294 ASP ALA LEU ARG ALA ARG GLY VAL ARG LEU ALA LEU ASP SEQRES 15 A 294 ASP PHE GLY THR GLY TYR SER SER LEU SER TYR LEU SER SEQRES 16 A 294 GLN LEU PRO PHE HIS GLY LEU LYS ILE ASP GLN SER PHE SEQRES 17 A 294 VAL ARG LYS ILE PRO ALA HIS PRO SER GLU THR GLN ILE SEQRES 18 A 294 VAL THR THR ILE LEU ALA LEU ALA ARG GLY LEU GLY MSE SEQRES 19 A 294 GLU VAL VAL ALA GLU GLY ILE GLU THR ALA GLN GLN TYR SEQRES 20 A 294 ALA PHE LEU ARG ASP ARG GLY CYS GLU PHE GLY GLN GLY SEQRES 21 A 294 ASN LEU MSE SER THR PRO GLN ALA ALA ASP ALA PHE ALA SEQRES 22 A 294 SER LEU LEU ASP ARG GLN LYS ALA SER GLY GLN ARG PRO SEQRES 23 A 294 VAL HIS GLY HIS GLU THR ALA PRO SEQRES 1 B 294 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 294 ARG GLU ASN LEU TYR PHE GLN GLY HIS GLU ARG LEU THR SEQRES 3 B 294 LEU ASP THR ARG LEU ARG GLN ALA LEU GLU ARG ASN GLU SEQRES 4 B 294 LEU VAL LEU HIS TYR GLN PRO ILE VAL GLU LEU ALA SER SEQRES 5 B 294 GLY ARG ILE VAL GLY GLY GLU ALA LEU VAL ARG TRP GLU SEQRES 6 B 294 ASP PRO GLU ARG GLY LEU VAL MSE PRO SER ALA PHE ILE SEQRES 7 B 294 PRO ALA ALA GLU ASP THR GLY LEU ILE VAL ALA LEU SER SEQRES 8 B 294 ASP TRP VAL LEU GLU ALA CYS CYS THR GLN LEU ARG ALA SEQRES 9 B 294 TRP GLN GLN GLN GLY ARG ALA ALA ASP ASP LEU THR LEU SEQRES 10 B 294 SER VAL ASN ILE SER THR ARG GLN PHE GLU GLY GLU HIS SEQRES 11 B 294 LEU THR ARG ALA VAL ASP ARG ALA LEU ALA ARG SER GLY SEQRES 12 B 294 LEU ARG PRO ASP CYS LEU GLU LEU GLU ILE THR GLU ASN SEQRES 13 B 294 VAL MSE LEU VAL MSE THR ASP GLU VAL ARG THR CYS LEU SEQRES 14 B 294 ASP ALA LEU ARG ALA ARG GLY VAL ARG LEU ALA LEU ASP SEQRES 15 B 294 ASP PHE GLY THR GLY TYR SER SER LEU SER TYR LEU SER SEQRES 16 B 294 GLN LEU PRO PHE HIS GLY LEU LYS ILE ASP GLN SER PHE SEQRES 17 B 294 VAL ARG LYS ILE PRO ALA HIS PRO SER GLU THR GLN ILE SEQRES 18 B 294 VAL THR THR ILE LEU ALA LEU ALA ARG GLY LEU GLY MSE SEQRES 19 B 294 GLU VAL VAL ALA GLU GLY ILE GLU THR ALA GLN GLN TYR SEQRES 20 B 294 ALA PHE LEU ARG ASP ARG GLY CYS GLU PHE GLY GLN GLY SEQRES 21 B 294 ASN LEU MSE SER THR PRO GLN ALA ALA ASP ALA PHE ALA SEQRES 22 B 294 SER LEU LEU ASP ARG GLN LYS ALA SER GLY GLN ARG PRO SEQRES 23 B 294 VAL HIS GLY HIS GLU THR ALA PRO MODRES 3II8 MSE A 537 MET SELENOMETHIONINE MODRES 3II8 MSE A 622 MET SELENOMETHIONINE MODRES 3II8 MSE A 625 MET SELENOMETHIONINE MODRES 3II8 MSE A 698 MET SELENOMETHIONINE MODRES 3II8 MSE A 727 MET SELENOMETHIONINE MODRES 3II8 MSE B 537 MET SELENOMETHIONINE MODRES 3II8 MSE B 622 MET SELENOMETHIONINE MODRES 3II8 MSE B 625 MET SELENOMETHIONINE MODRES 3II8 MSE B 698 MET SELENOMETHIONINE MODRES 3II8 MSE B 727 MET SELENOMETHIONINE HET MSE A 537 8 HET MSE A 622 8 HET MSE A 625 8 HET MSE A 698 8 HET MSE A 727 8 HET MSE B 537 8 HET MSE B 622 8 HET MSE B 625 8 HET MSE B 698 8 HET MSE B 727 8 HET C2E A 801 46 HET MG A 802 1 HET CL A 806 1 HET C2E B 801 46 HET MG B 802 1 HETNAM MSE SELENOMETHIONINE HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETSYN C2E C-DI-GMP, CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 C2E 2(C20 H24 N10 O14 P2) FORMUL 4 MG 2(MG 2+) FORMUL 5 CL CL 1- FORMUL 8 HOH *237(H2 O) HELIX 1 1 THR A 490 ARG A 501 1 12 HELIX 2 2 MSE A 537 ALA A 540 5 4 HELIX 3 3 PHE A 541 GLY A 549 1 9 HELIX 4 4 GLY A 549 GLN A 572 1 24 HELIX 5 5 SER A 586 GLY A 592 5 7 HELIX 6 6 GLU A 593 GLY A 607 1 15 HELIX 7 7 ARG A 609 ASP A 611 5 3 HELIX 8 8 ASN A 620 MSE A 625 5 6 HELIX 9 9 THR A 626 GLY A 640 1 15 HELIX 10 10 SER A 654 LEU A 661 1 8 HELIX 11 11 ASP A 669 ARG A 674 1 6 HELIX 12 12 HIS A 679 GLY A 697 1 19 HELIX 13 13 THR A 707 ARG A 717 1 11 HELIX 14 14 ALA A 733 ALA A 745 1 13 HELIX 15 15 HIS B 486 ARG B 501 1 16 HELIX 16 16 MSE B 537 GLY B 549 1 13 HELIX 17 17 LEU B 550 GLN B 572 1 23 HELIX 18 18 SER B 586 GLY B 592 5 7 HELIX 19 19 GLU B 593 GLY B 607 1 15 HELIX 20 20 ARG B 609 ASP B 611 5 3 HELIX 21 21 ASN B 620 MSE B 625 5 6 HELIX 22 22 THR B 626 GLY B 640 1 15 HELIX 23 23 SER B 654 LEU B 661 1 8 HELIX 24 24 ASP B 669 ARG B 674 1 6 HELIX 25 25 HIS B 679 GLY B 697 1 19 HELIX 26 26 THR B 707 ARG B 717 1 11 HELIX 27 27 ALA B 732 SER B 746 1 15 SHEET 1 A 4 GLY A 534 VAL A 536 0 SHEET 2 A 4 ILE A 519 ASP A 530 -1 N ASP A 530 O GLY A 534 SHEET 3 A 4 LEU A 504 GLU A 513 -1 N HIS A 507 O LEU A 525 SHEET 4 A 4 GLN A 731 ALA A 732 -1 O GLN A 731 N TYR A 508 SHEET 1 B10 GLY A 534 VAL A 536 0 SHEET 2 B10 ILE A 519 ASP A 530 -1 N ASP A 530 O GLY A 534 SHEET 3 B10 LEU A 581 ILE A 585 1 O SER A 582 N ALA A 524 SHEET 4 B10 LEU A 613 THR A 618 1 O GLU A 616 N ILE A 585 SHEET 5 B10 ARG A 642 PHE A 648 1 O ASP A 646 N ILE A 617 SHEET 6 B10 GLY A 665 ILE A 668 1 O LYS A 667 N LEU A 645 SHEET 7 B10 GLU A 699 GLU A 703 1 O GLU A 699 N LEU A 666 SHEET 8 B10 PHE A 721 GLN A 723 1 O PHE A 721 N ALA A 702 SHEET 9 B10 LEU A 504 GLU A 513 -1 N VAL A 512 O GLY A 722 SHEET 10 B10 GLN A 731 ALA A 732 -1 O GLN A 731 N TYR A 508 SHEET 1 C10 GLY B 534 VAL B 536 0 SHEET 2 C10 ILE B 519 ASP B 530 -1 N ASP B 530 O GLY B 534 SHEET 3 C10 THR B 580 ASN B 584 1 O SER B 582 N ALA B 524 SHEET 4 C10 LEU B 613 THR B 618 1 O GLU B 616 N VAL B 583 SHEET 5 C10 ARG B 642 PHE B 648 1 O ALA B 644 N LEU B 615 SHEET 6 C10 GLY B 665 ILE B 668 1 O LYS B 667 N LEU B 645 SHEET 7 C10 GLU B 699 GLU B 703 1 O VAL B 701 N LEU B 666 SHEET 8 C10 PHE B 721 GLN B 723 1 O PHE B 721 N ALA B 702 SHEET 9 C10 LEU B 504 GLU B 513 -1 N VAL B 512 O GLY B 722 SHEET 10 C10 ILE B 519 ASP B 530 -1 O LEU B 525 N HIS B 507 LINK C VAL A 536 N MSE A 537 1555 1555 1.33 LINK C MSE A 537 N PRO A 538 1555 1555 1.34 LINK C VAL A 621 N MSE A 622 1555 1555 1.33 LINK C MSE A 622 N LEU A 623 1555 1555 1.33 LINK C VAL A 624 N MSE A 625 1555 1555 1.33 LINK C MSE A 625 N THR A 626 1555 1555 1.33 LINK C GLY A 697 N MSE A 698 1555 1555 1.34 LINK C MSE A 698 N GLU A 699 1555 1555 1.34 LINK C LEU A 726 N MSE A 727 1555 1555 1.33 LINK C MSE A 727 N SER A 728 1555 1555 1.33 LINK C VAL B 536 N MSE B 537 1555 1555 1.33 LINK C MSE B 537 N PRO B 538 1555 1555 1.35 LINK C VAL B 621 N MSE B 622 1555 1555 1.33 LINK C MSE B 622 N LEU B 623 1555 1555 1.32 LINK C VAL B 624 N MSE B 625 1555 1555 1.33 LINK C MSE B 625 N THR B 626 1555 1555 1.33 LINK C GLY B 697 N MSE B 698 1555 1555 1.33 LINK C MSE B 698 N GLU B 699 1555 1555 1.33 LINK C LEU B 726 N MSE B 727 1555 1555 1.34 LINK C MSE B 727 N SER B 728 1555 1555 1.34 LINK OE2 GLU A 523 MG MG A 802 1555 1555 2.05 LINK OD1 ASN A 584 MG MG A 802 1555 1555 1.89 LINK OE1 GLU A 616 MG MG A 802 1555 1555 2.12 LINK OD2 ASP A 646 MG MG A 802 1555 1555 2.15 LINK OE2 GLU B 523 MG MG B 802 1555 1555 2.33 LINK OD1 ASN B 584 MG MG B 802 1555 1555 2.20 LINK OE1 GLU B 616 MG MG B 802 1555 1555 1.91 LINK OD2 ASP B 646 MG MG B 802 1555 1555 2.07 LINK MG MG A 802 O HOH A 1 1555 1555 2.27 LINK MG MG B 802 O HOH B 221 1555 1555 2.05 LINK O21 C2E A 801 MG MG A 802 1555 1555 1.89 LINK O21 C2E B 801 MG MG B 802 1555 1555 2.04 CISPEP 1 ILE A 676 PRO A 677 0 -21.42 CISPEP 2 ILE B 676 PRO B 677 0 -8.04 SITE 1 AC1 28 HOH A 1 HOH A 4 HOH A 29 HOH A 54 SITE 2 AC1 28 HOH A 76 HOH A 85 HOH A 115 HOH A 231 SITE 3 AC1 28 GLN A 509 GLU A 523 LEU A 525 VAL A 526 SITE 4 AC1 28 ARG A 527 MSE A 537 PRO A 538 VAL A 558 SITE 5 AC1 28 ARG A 567 ASN A 584 ASP A 646 GLN A 670 SITE 6 AC1 28 GLU A 703 GLY A 704 ILE A 705 GLU A 706 SITE 7 AC1 28 GLY A 724 ASN A 725 PRO A 730 MG A 802 SITE 1 AC2 6 HOH A 1 GLU A 523 ASN A 584 GLU A 616 SITE 2 AC2 6 ASP A 646 C2E A 801 SITE 1 AC3 3 HOH A 7 MSE A 537 ARG A 609 SITE 1 AC4 25 HOH B 119 HOH B 158 HOH B 164 HOH B 180 SITE 2 AC4 25 HOH B 217 HOH B 221 GLN B 509 GLU B 523 SITE 3 AC4 25 LEU B 525 VAL B 526 ARG B 527 PRO B 538 SITE 4 AC4 25 ILE B 551 ASN B 584 ASP B 646 ASP B 647 SITE 5 AC4 25 GLN B 670 GLU B 703 GLY B 704 ILE B 705 SITE 6 AC4 25 GLU B 706 GLY B 724 ASN B 725 PRO B 730 SITE 7 AC4 25 MG B 802 SITE 1 AC5 6 HOH B 221 GLU B 523 ASN B 584 GLU B 616 SITE 2 AC5 6 ASP B 646 C2E B 801 CRYST1 51.560 63.201 173.987 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019395 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015823 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005748 0.00000