HEADER HYDROLASE 01-AUG-09 3III TITLE 1.95 ANGSTROM CRYSTAL STRUCTURE OF COCE/NOND FAMILY HYDROLASE TITLE 2 (SACOL2612) FROM STAPHYLOCOCCUS AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: COCE/NOND FAMILY HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS COL; SOURCE 3 ORGANISM_TAXID: 93062; SOURCE 4 STRAIN: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS COL; SOURCE 5 GENE: SACOL2612; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19C KEYWDS STRUCTURAL GENOMICS, HYDROLASE, CENTER FOR STRUCTURAL GENOMICS OF KEYWDS 2 INFECTIOUS DISEASES, CSGID EXPDTA X-RAY DIFFRACTION AUTHOR T.OSINSKI,M.CHRUSZCZ,M.J.DOMAGALSKI,M.CYMBOROWSKI,I.A.SHUMILIN, AUTHOR 2 T.SKARINA,O.ONOPRIYENKO,M.D.ZIMMERMAN,A.SAVCHENKO,A.EDWARDS, AUTHOR 3 W.F.ANDERSON,W.MINOR,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS AUTHOR 4 DISEASES (CSGID) REVDAT 4 30-OCT-24 3III 1 REMARK REVDAT 3 13-APR-22 3III 1 AUTHOR JRNL REMARK LINK REVDAT 2 13-JUL-11 3III 1 VERSN REVDAT 1 18-AUG-09 3III 0 JRNL AUTH T.OSINSKI,M.CHRUSZCZ,M.J.DOMAGALSKI,M.CYMBOROWSKI, JRNL AUTH 2 I.A.SHUMILIN,T.SKARINA,O.ONOPRIYENKO,M.D.ZIMMERMAN, JRNL AUTH 3 A.SAVCHENKO,A.EDWARDS,W.F.ANDERSON,W.MINOR, JRNL AUTH 4 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 5 (CSGID) JRNL TITL 1.95 ANGSTROM CRYSTAL STRUCTURE OF COCE/NOND FAMILY JRNL TITL 2 HYDROLASE (SACOL2612) FROM STAPHYLOCOCCUS AUREUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 42010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2232 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3024 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.1690 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4506 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 556 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.141 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.237 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4719 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3188 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6416 ; 1.605 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7777 ; 2.217 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 570 ; 6.854 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 240 ;35.283 ;24.958 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 789 ;12.630 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;17.327 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 662 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5313 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 952 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2816 ; 0.899 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1136 ; 0.150 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4572 ; 1.466 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1903 ; 2.770 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1844 ; 3.978 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 37 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7910 36.1020 -9.5020 REMARK 3 T TENSOR REMARK 3 T11: 0.1692 T22: 0.2037 REMARK 3 T33: 0.2069 T12: -0.0603 REMARK 3 T13: -0.0555 T23: 0.0858 REMARK 3 L TENSOR REMARK 3 L11: 1.4354 L22: 3.2252 REMARK 3 L33: 2.0665 L12: -0.8830 REMARK 3 L13: -0.7292 L23: 0.5802 REMARK 3 S TENSOR REMARK 3 S11: -0.0307 S12: 0.1581 S13: 0.4769 REMARK 3 S21: -0.0796 S22: 0.0044 S23: -0.3712 REMARK 3 S31: -0.3024 S32: 0.2305 S33: 0.0263 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): 3.6740 42.3290 0.7650 REMARK 3 T TENSOR REMARK 3 T11: 0.2620 T22: 0.1167 REMARK 3 T33: 0.1410 T12: -0.0004 REMARK 3 T13: -0.0980 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 1.0394 L22: 0.5918 REMARK 3 L33: 1.5021 L12: 0.0680 REMARK 3 L13: -0.1829 L23: -0.0523 REMARK 3 S TENSOR REMARK 3 S11: -0.1103 S12: 0.0726 S13: 0.2765 REMARK 3 S21: 0.0993 S22: 0.0365 S23: -0.0838 REMARK 3 S31: -0.4131 S32: -0.0643 S33: 0.0738 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7170 31.4100 7.5460 REMARK 3 T TENSOR REMARK 3 T11: 0.4978 T22: 0.4116 REMARK 3 T33: 0.4763 T12: 0.0263 REMARK 3 T13: -0.0611 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 9.1127 L22: 21.9846 REMARK 3 L33: 1.1435 L12: -8.9940 REMARK 3 L13: 2.6190 L23: -4.8465 REMARK 3 S TENSOR REMARK 3 S11: -0.1684 S12: 0.1796 S13: 0.6717 REMARK 3 S21: -0.4611 S22: -0.1290 S23: -1.2904 REMARK 3 S31: 0.0482 S32: 0.0527 S33: 0.2975 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 355 REMARK 3 ORIGIN FOR THE GROUP (A): 1.2310 26.6290 10.4270 REMARK 3 T TENSOR REMARK 3 T11: 0.1310 T22: 0.0880 REMARK 3 T33: 0.0300 T12: 0.0018 REMARK 3 T13: -0.0379 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 0.4585 L22: 0.3955 REMARK 3 L33: 0.7207 L12: -0.1126 REMARK 3 L13: -0.0097 L23: -0.1180 REMARK 3 S TENSOR REMARK 3 S11: -0.0780 S12: 0.0028 S13: 0.0613 REMARK 3 S21: 0.0760 S22: -0.0104 S23: 0.0163 REMARK 3 S31: -0.1119 S32: -0.0786 S33: 0.0885 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 356 A 560 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9610 6.5950 30.2040 REMARK 3 T TENSOR REMARK 3 T11: 0.2411 T22: 0.1177 REMARK 3 T33: 0.0438 T12: 0.0205 REMARK 3 T13: 0.0311 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.6190 L22: 1.0931 REMARK 3 L33: 1.0590 L12: -0.2305 REMARK 3 L13: -0.1698 L23: 0.2262 REMARK 3 S TENSOR REMARK 3 S11: -0.1618 S12: -0.1281 S13: -0.0754 REMARK 3 S21: 0.3099 S22: 0.0358 S23: 0.0863 REMARK 3 S31: 0.1266 S32: -0.0549 S33: 0.1261 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3III COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054453. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44452 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 42.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 16.20 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : 0.11200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.30 REMARK 200 R MERGE FOR SHELL (I) : 0.63700 REMARK 200 R SYM FOR SHELL (I) : 0.63700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 SOLVE/RESOLVE, SHELXD, MLPHARE, DM, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SUBERIC ACID, SEBACIC ACID, REMARK 280 HEXADECANEDIOIC ACID, DODECANEDIOIC ACID 12MM EACH, PEG3350 20%, REMARK 280 HEPES 0.1M PH 7.5, VAPOR DIFFUSION, TEMPERATURE 293K, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.34050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.24900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.24900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.67025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.24900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.24900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 158.01075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.24900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.24900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.67025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.24900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.24900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 158.01075 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 105.34050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ASN A 2 REMARK 465 ILE A 84 REMARK 465 THR A 85 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 106 CB CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 37 N CA C O CB CG CD REMARK 480 GLU A 37 OE1 OE2 REMARK 480 HIS A 373 N CA C O CB CG ND1 REMARK 480 HIS A 373 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 106 -5.98 88.65 REMARK 500 ASP A 129 -132.49 61.30 REMARK 500 SER A 169 -119.36 63.30 REMARK 500 ASN A 182 75.73 39.13 REMARK 500 GLU A 193 87.83 69.66 REMARK 500 ASN A 196 13.56 -152.60 REMARK 500 VAL A 202 -43.98 -137.25 REMARK 500 ASP A 245 -166.04 -106.71 REMARK 500 LEU A 273 -92.77 -133.55 REMARK 500 ARG A 297 -164.15 -118.06 REMARK 500 GLU A 299 -70.06 -66.99 REMARK 500 GLN A 451 -168.75 -125.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PLM A 566 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 561 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 15 NE2 REMARK 620 2 HOH A1009 O 172.1 REMARK 620 3 HOH A1010 O 92.0 94.9 REMARK 620 4 HOH A1011 O 83.1 89.8 173.4 REMARK 620 5 HOH A1122 O 94.1 81.1 97.6 78.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 561 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 562 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 563 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 564 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 565 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLM A 566 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP00832 RELATED DB: TARGETDB DBREF 3III A 1 560 UNP Q5HCV6 Q5HCV6_STAAC 1 560 SEQRES 1 A 560 MSE ASN GLN HIS LEU LEU GLY ASN PRO LYS LEU THR VAL SEQRES 2 A 560 THR HIS VAL ASN GLU VAL LYS ALA GLY ILE ASN HIS ILE SEQRES 3 A 560 VAL VAL ASP SER VAL GLN TYR GLY ASN GLN GLU MSE ILE SEQRES 4 A 560 MSE GLU LYS ASP GLY THR VAL GLU MSE ARG ASP GLY GLU SEQRES 5 A 560 LYS LEU TYR ILE ASN ILE PHE ARG PRO ASN LYS ASP GLY SEQRES 6 A 560 LYS PHE PRO VAL VAL MSE SER ALA ASP THR TYR GLY LYS SEQRES 7 A 560 ASP ASN LYS PRO LYS ILE THR ASN MSE GLY ALA LEU TRP SEQRES 8 A 560 PRO THR LEU GLY THR ILE PRO THR SER SER PHE THR PRO SEQRES 9 A 560 GLU GLU SER PRO ASP PRO GLY PHE TRP VAL PRO ASN ASP SEQRES 10 A 560 TYR VAL VAL VAL LYS VAL ALA LEU ARG GLY SER ASP LYS SEQRES 11 A 560 SER LYS GLY VAL LEU SER PRO TRP SER LYS ARG GLU ALA SEQRES 12 A 560 GLU ASP TYR TYR GLU VAL ILE GLU TRP ALA ALA ASN GLN SEQRES 13 A 560 SER TRP SER ASN GLY ASN ILE GLY THR ASN GLY VAL SER SEQRES 14 A 560 TYR LEU ALA VAL THR GLN TRP TRP VAL ALA SER LEU ASN SEQRES 15 A 560 PRO PRO HIS LEU LYS ALA MSE ILE PRO TRP GLU GLY LEU SEQRES 16 A 560 ASN ASP MSE TYR ARG GLU VAL ALA PHE HIS GLY GLY ILE SEQRES 17 A 560 PRO ASP THR GLY PHE TYR ARG PHE TRP THR GLN GLY ILE SEQRES 18 A 560 PHE ALA ARG TRP THR ASP ASN PRO ASN ILE GLU ASP LEU SEQRES 19 A 560 ILE GLN ALA GLN GLN GLU HIS PRO LEU PHE ASP ASP PHE SEQRES 20 A 560 TRP LYS GLN ARG GLN VAL PRO LEU SER GLN ILE LYS THR SEQRES 21 A 560 PRO LEU LEU THR CYS ALA SER TRP SER THR GLN GLY LEU SEQRES 22 A 560 HIS ASN ARG GLY SER PHE GLU GLY PHE LYS GLN ALA ALA SEQRES 23 A 560 SER GLU GLU LYS TRP LEU TYR VAL HIS GLY ARG LYS GLU SEQRES 24 A 560 TRP GLU SER TYR TYR ALA ARG GLU ASN LEU GLU ARG GLN SEQRES 25 A 560 LYS SER PHE PHE ASP PHE TYR LEU LYS GLU GLU ASN ASN SEQRES 26 A 560 ASP TRP LYS ASP THR PRO HIS VAL ILE TYR GLU VAL ARG SEQRES 27 A 560 ASP GLN PHE TYR LYS GLY GLU PHE LYS SER ALA SER ALA SEQRES 28 A 560 PHE PRO LEU PRO ASN ALA GLU TYR THR PRO LEU TYR LEU SEQRES 29 A 560 ASN ALA GLU ASN HIS THR LEU ASN HIS ALA LYS ILE SER SEQRES 30 A 560 SER ALA HIS VAL ALA GLN TYR ASP SER GLU ASP LYS GLN SEQRES 31 A 560 GLN ASP VAL SER PHE LYS TYR THR PHE ASP LYS ASP THR SEQRES 32 A 560 GLU LEU VAL GLY ASN MSE ASN LEU LYS LEU TRP VAL SER SEQRES 33 A 560 THR LYS ASP SER ASP ASP MSE ASP LEU PHE ALA GLY ILE SEQRES 34 A 560 LYS LYS LEU ASP ARG ARG GLY ASN GLU VAL ASN PHE PRO SEQRES 35 A 560 ASP PHE ASN HIS ILE GLU ASN GLY GLN VAL ALA THR GLY SEQRES 36 A 560 TRP LEU ARG VAL SER HIS ARG GLU LEU ASP GLN GLU LYS SEQRES 37 A 560 SER SER ILE ALA GLN PRO TRP HIS LYS HIS GLU THR GLU SEQRES 38 A 560 LEU LYS LEU SER GLN ASP GLU ILE VAL PRO VAL GLU ILE SEQRES 39 A 560 GLU LEU LEU PRO SER GLY THR LEU PHE LYS GLN GLY GLU SEQRES 40 A 560 THR LEU GLU VAL VAL VAL LYS GLY SER GLU ILE VAL ILE SEQRES 41 A 560 GLY ASN SER THR PRO GLY MSE LYS THR ARG TYR GLU HIS SEQRES 42 A 560 GLU GLU THR VAL ASN LYS GLY MSE HIS MSE ILE TYR THR SEQRES 43 A 560 GLY GLY LYS TYR ASP SER GLN LEU ILE ILE PRO ILE VAL SEQRES 44 A 560 ASN MODRES 3III MSE A 38 MET SELENOMETHIONINE MODRES 3III MSE A 40 MET SELENOMETHIONINE MODRES 3III MSE A 48 MET SELENOMETHIONINE MODRES 3III MSE A 71 MET SELENOMETHIONINE MODRES 3III MSE A 87 MET SELENOMETHIONINE MODRES 3III MSE A 189 MET SELENOMETHIONINE MODRES 3III MSE A 198 MET SELENOMETHIONINE MODRES 3III MSE A 409 MET SELENOMETHIONINE MODRES 3III MSE A 423 MET SELENOMETHIONINE MODRES 3III MSE A 527 MET SELENOMETHIONINE MODRES 3III MSE A 541 MET SELENOMETHIONINE MODRES 3III MSE A 543 MET SELENOMETHIONINE HET MSE A 38 8 HET MSE A 40 8 HET MSE A 48 8 HET MSE A 71 8 HET MSE A 87 8 HET MSE A 189 8 HET MSE A 198 8 HET MSE A 409 8 HET MSE A 423 8 HET MSE A 527 16 HET MSE A 541 8 HET MSE A 543 16 HET NI A 561 1 HET CL A 562 1 HET CL A 563 1 HET CL A 564 1 HET CL A 565 1 HET PLM A 566 10 HETNAM MSE SELENOMETHIONINE HETNAM NI NICKEL (II) ION HETNAM CL CHLORIDE ION HETNAM PLM PALMITIC ACID FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 NI NI 2+ FORMUL 3 CL 4(CL 1-) FORMUL 7 PLM C16 H32 O2 FORMUL 8 HOH *556(H2 O) HELIX 1 1 GLN A 3 GLY A 7 5 5 HELIX 2 2 HIS A 15 VAL A 19 5 5 HELIX 3 3 ASN A 86 TRP A 91 1 6 HELIX 4 4 PRO A 92 GLY A 95 5 4 HELIX 5 5 ASP A 109 VAL A 114 1 6 HELIX 6 6 PRO A 115 ASP A 117 5 3 HELIX 7 7 SER A 139 ASN A 155 1 17 HELIX 8 8 SER A 169 SER A 180 1 12 HELIX 9 9 ASP A 197 VAL A 202 1 6 HELIX 10 10 GLY A 212 TRP A 225 1 14 HELIX 11 11 ASP A 233 HIS A 241 1 9 HELIX 12 12 ASP A 245 GLN A 250 1 6 HELIX 13 13 PRO A 254 ILE A 258 5 5 HELIX 14 14 SER A 269 GLN A 271 5 3 HELIX 15 15 HIS A 274 ALA A 285 1 12 HELIX 16 16 LYS A 298 ALA A 305 1 8 HELIX 17 17 ALA A 305 LEU A 320 1 16 HELIX 18 18 ASP A 326 THR A 330 5 5 HELIX 19 19 SER A 460 ARG A 462 5 3 SHEET 1 A 7 GLY A 22 SER A 30 0 SHEET 2 A 7 GLY A 34 GLU A 47 -1 O LYS A 42 N GLY A 22 SHEET 3 A 7 LYS A 53 ARG A 60 -1 O ARG A 60 N ILE A 39 SHEET 4 A 7 VAL A 119 ALA A 124 -1 O VAL A 120 N PHE A 59 SHEET 5 A 7 PHE A 67 ASP A 74 1 N PRO A 68 O VAL A 119 SHEET 6 A 7 SER A 159 VAL A 168 1 O GLY A 164 N VAL A 69 SHEET 7 A 7 LEU A 186 TRP A 192 1 O LYS A 187 N ILE A 163 SHEET 1 B 2 PHE A 204 HIS A 205 0 SHEET 2 B 2 ILE A 208 PRO A 209 -1 O ILE A 208 N HIS A 205 SHEET 1 C 4 LEU A 262 SER A 267 0 SHEET 2 C 4 LYS A 290 HIS A 295 1 O TRP A 291 N THR A 264 SHEET 3 C 4 VAL A 333 GLN A 340 1 O ILE A 334 N VAL A 294 SHEET 4 C 4 LYS A 343 ALA A 349 -1 O GLU A 345 N VAL A 337 SHEET 1 D 6 THR A 370 ASN A 372 0 SHEET 2 D 6 GLU A 358 ASN A 365 -1 N TYR A 363 O ASN A 372 SHEET 3 D 6 GLN A 553 VAL A 559 -1 O ILE A 558 N GLU A 358 SHEET 4 D 6 THR A 403 THR A 417 -1 N LYS A 412 O GLN A 553 SHEET 5 D 6 MSE A 541 THR A 546 -1 O TYR A 545 N TRP A 414 SHEET 6 D 6 HIS A 380 ASP A 385 -1 N ALA A 382 O ILE A 544 SHEET 1 E 5 THR A 370 ASN A 372 0 SHEET 2 E 5 GLU A 358 ASN A 365 -1 N TYR A 363 O ASN A 372 SHEET 3 E 5 GLN A 553 VAL A 559 -1 O ILE A 558 N GLU A 358 SHEET 4 E 5 THR A 403 THR A 417 -1 N LYS A 412 O GLN A 553 SHEET 5 E 5 VAL A 490 PHE A 503 -1 O VAL A 490 N VAL A 415 SHEET 1 F 4 VAL A 393 THR A 398 0 SHEET 2 F 4 THR A 508 LYS A 514 -1 O VAL A 511 N PHE A 395 SHEET 3 F 4 ASP A 424 LEU A 432 -1 N LYS A 430 O GLU A 510 SHEET 4 F 4 ALA A 453 ARG A 458 -1 O ALA A 453 N ILE A 429 SHEET 1 G 2 PHE A 441 ASP A 443 0 SHEET 2 G 2 ILE A 447 GLY A 450 -1 O ILE A 447 N ASP A 443 LINK C AGLU A 37 N MSE A 38 1555 1555 1.32 LINK C BGLU A 37 N MSE A 38 1555 1555 1.31 LINK C MSE A 38 N ILE A 39 1555 1555 1.33 LINK C ILE A 39 N MSE A 40 1555 1555 1.33 LINK C MSE A 40 N GLU A 41 1555 1555 1.32 LINK C GLU A 47 N MSE A 48 1555 1555 1.34 LINK C MSE A 48 N ARG A 49 1555 1555 1.33 LINK C VAL A 70 N MSE A 71 1555 1555 1.33 LINK C MSE A 71 N SER A 72 1555 1555 1.34 LINK C ASN A 86 N MSE A 87 1555 1555 1.34 LINK C MSE A 87 N GLY A 88 1555 1555 1.33 LINK C ALA A 188 N MSE A 189 1555 1555 1.33 LINK C MSE A 189 N ILE A 190 1555 1555 1.34 LINK C ASP A 197 N MSE A 198 1555 1555 1.32 LINK C MSE A 198 N TYR A 199 1555 1555 1.33 LINK C ASN A 408 N MSE A 409 1555 1555 1.34 LINK C MSE A 409 N ASN A 410 1555 1555 1.32 LINK C ASP A 422 N MSE A 423 1555 1555 1.33 LINK C MSE A 423 N ASP A 424 1555 1555 1.32 LINK C GLY A 526 N AMSE A 527 1555 1555 1.34 LINK C GLY A 526 N BMSE A 527 1555 1555 1.34 LINK C AMSE A 527 N LYS A 528 1555 1555 1.33 LINK C BMSE A 527 N LYS A 528 1555 1555 1.33 LINK C GLY A 540 N MSE A 541 1555 1555 1.33 LINK C MSE A 541 N HIS A 542 1555 1555 1.32 LINK C HIS A 542 N AMSE A 543 1555 1555 1.33 LINK C HIS A 542 N BMSE A 543 1555 1555 1.33 LINK C AMSE A 543 N ILE A 544 1555 1555 1.33 LINK C BMSE A 543 N ILE A 544 1555 1555 1.34 LINK NE2 HIS A 15 NI NI A 561 1555 1555 1.81 LINK NI NI A 561 O HOH A1009 1555 1555 1.93 LINK NI NI A 561 O HOH A1010 1555 1555 1.96 LINK NI NI A 561 O HOH A1011 1555 1555 1.90 LINK NI NI A 561 O HOH A1122 1555 1555 1.95 CISPEP 1 PHE A 352 PRO A 353 0 -2.38 CISPEP 2 PHE A 444 ASN A 445 0 -7.09 SITE 1 AC1 6 HIS A 15 HIS A 380 HOH A1009 HOH A1010 SITE 2 AC1 6 HOH A1011 HOH A1122 SITE 1 AC2 4 ARG A 200 GLN A 252 LYS A 468 TRP A 475 SITE 1 AC3 2 TYR A 397 ASP A 400 SITE 1 AC4 4 PRO A 331 HIS A 332 SER A 350 HOH A1100 SITE 1 AC5 4 PRO A 353 TYR A 359 GLY A 407 ASN A 408 SITE 1 AC6 6 TYR A 76 SER A 169 PHE A 216 TRP A 300 SITE 2 AC6 6 HOH A 593 HOH A 965 CRYST1 74.498 74.498 210.681 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013423 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004747 0.00000