HEADER PROTEIN BINDING, TRANSFERASE 02-AUG-09 3IIL TITLE THE STRUCTURE OF HCINAP-MGADP-PI COMPLEX AT 2.0 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: COILIN-INTERACTING NUCLEAR ATPASE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: COILIN-INTERACTING NULCEAR ATPASE PROTEIN, TAF9 RNA COMPND 5 POLYMERASE II, TATA BOX BINDING PROTEIN (TBP)-ASSOCIATED FACTOR, COMPND 6 32KDA, ISOFORM CRA_B, HUMAN ADENYLATE KINASE 6; COMPND 7 EC: 2.7.4.3; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CINAP, TAF9, HCG_37060; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-3 KEYWDS ALPHA AND BETA PROTEINS (A/B), PROTEIN BINDING, TRANSFERASE, KEYWDS 2 PHOSPHOTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.ZOGRAPHOS,C.E.DRAKOU,D.D.LEONIDAS REVDAT 5 06-SEP-23 3IIL 1 REMARK SEQADV LINK REVDAT 4 18-JAN-12 3IIL 1 JRNL REVDAT 3 23-NOV-11 3IIL 1 JRNL REVDAT 2 05-OCT-11 3IIL 1 JRNL VERSN REMARK REVDAT 1 06-OCT-10 3IIL 0 JRNL AUTH C.E.DRAKOU,A.MALEKKOU,J.M.HAYES,C.W.LEDERER,D.D.LEONIDAS, JRNL AUTH 2 N.G.OIKONOMAKOS,A.I.LAMOND,N.SANTAMA,S.E.ZOGRAPHOS JRNL TITL HCINAP IS AN ATYPICAL MAMMALIAN NUCLEAR ADENYLATE KINASE JRNL TITL 2 WITH AN ATPASE MOTIF: STRUCTURAL AND FUNCTIONAL STUDIES. JRNL REF PROTEINS V. 80 206 2012 JRNL REFN ISSN 0887-3585 JRNL PMID 22038794 JRNL DOI 10.1002/PROT.23186 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20968 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1131 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1530 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1441 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 201 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 32.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.391 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1532 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2086 ; 1.258 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 174 ; 4.941 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;38.786 ;25.714 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 265 ;14.258 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ; 7.893 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 221 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1158 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 872 ; 0.543 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1421 ; 1.033 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 660 ; 1.674 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 665 ; 2.794 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 2 REMARK 3 ORIGIN FOR THE GROUP (A): 44.1753 17.4499 9.4335 REMARK 3 T TENSOR REMARK 3 T11: 0.4039 T22: 0.3399 REMARK 3 T33: 0.3811 T12: -0.1547 REMARK 3 T13: 0.0242 T23: 0.0957 REMARK 3 L TENSOR REMARK 3 L11: 5.0355 L22: 8.2790 REMARK 3 L33: 1.9270 L12: 1.8106 REMARK 3 L13: 0.2030 L23: -1.4211 REMARK 3 S TENSOR REMARK 3 S11: -0.1159 S12: 0.6672 S13: 0.6920 REMARK 3 S21: -0.2745 S22: 0.1073 S23: -0.5041 REMARK 3 S31: -0.6611 S32: 0.5483 S33: 0.0086 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 22 REMARK 3 ORIGIN FOR THE GROUP (A): 35.2492 -0.6883 -1.2394 REMARK 3 T TENSOR REMARK 3 T11: 0.1537 T22: 0.1073 REMARK 3 T33: 0.1372 T12: -0.0007 REMARK 3 T13: -0.0125 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.7160 L22: 1.4318 REMARK 3 L33: 1.6328 L12: 0.5448 REMARK 3 L13: 0.2278 L23: 0.9466 REMARK 3 S TENSOR REMARK 3 S11: -0.1382 S12: 0.0526 S13: 0.1523 REMARK 3 S21: -0.1956 S22: 0.0421 S23: 0.1241 REMARK 3 S31: -0.1604 S32: -0.1032 S33: 0.0961 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 36 REMARK 3 ORIGIN FOR THE GROUP (A): 38.6406 5.7306 -3.1438 REMARK 3 T TENSOR REMARK 3 T11: 0.2249 T22: 0.1331 REMARK 3 T33: 0.1651 T12: -0.0383 REMARK 3 T13: -0.0580 T23: 0.0838 REMARK 3 L TENSOR REMARK 3 L11: 4.2586 L22: 1.6800 REMARK 3 L33: 1.5488 L12: -2.3022 REMARK 3 L13: -0.3919 L23: 0.9403 REMARK 3 S TENSOR REMARK 3 S11: -0.2014 S12: 0.1508 S13: 0.3989 REMARK 3 S21: -0.0807 S22: 0.0274 S23: -0.0571 REMARK 3 S31: -0.2779 S32: -0.0104 S33: 0.1740 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 44 REMARK 3 ORIGIN FOR THE GROUP (A): 50.8384 -2.0841 -11.2260 REMARK 3 T TENSOR REMARK 3 T11: 0.1805 T22: 0.1233 REMARK 3 T33: 0.1182 T12: -0.0344 REMARK 3 T13: 0.0639 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 2.6932 L22: 8.3703 REMARK 3 L33: 9.3711 L12: -1.3345 REMARK 3 L13: -1.0116 L23: -0.6621 REMARK 3 S TENSOR REMARK 3 S11: 0.1710 S12: 0.3258 S13: -0.0438 REMARK 3 S21: -0.5392 S22: -0.1235 S23: 0.1565 REMARK 3 S31: -0.1339 S32: -0.0391 S33: -0.0475 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 54 REMARK 3 ORIGIN FOR THE GROUP (A): 48.6586 -17.1267 -13.2243 REMARK 3 T TENSOR REMARK 3 T11: 0.4400 T22: 0.4264 REMARK 3 T33: 0.4851 T12: -0.1596 REMARK 3 T13: 0.1232 T23: -0.1698 REMARK 3 L TENSOR REMARK 3 L11: 7.1336 L22: 9.5868 REMARK 3 L33: 2.3464 L12: 3.7036 REMARK 3 L13: 1.5653 L23: -3.0495 REMARK 3 S TENSOR REMARK 3 S11: 0.3517 S12: -0.4022 S13: -0.1561 REMARK 3 S21: -0.9587 S22: 0.0593 S23: 0.9437 REMARK 3 S31: 0.7525 S32: -0.3355 S33: -0.4110 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 55 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): 52.9147 -2.8649 -1.5906 REMARK 3 T TENSOR REMARK 3 T11: 0.1305 T22: 0.1321 REMARK 3 T33: 0.1191 T12: -0.0226 REMARK 3 T13: 0.0640 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 5.1868 L22: 8.5578 REMARK 3 L33: 6.3791 L12: -0.3873 REMARK 3 L13: -2.0380 L23: 4.6386 REMARK 3 S TENSOR REMARK 3 S11: -0.1965 S12: 0.0378 S13: -0.0078 REMARK 3 S21: -0.1627 S22: 0.0219 S23: -0.5318 REMARK 3 S31: 0.0958 S32: 0.3918 S33: 0.1746 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 81 REMARK 3 ORIGIN FOR THE GROUP (A): 43.9241 0.2242 1.8224 REMARK 3 T TENSOR REMARK 3 T11: 0.1453 T22: 0.1467 REMARK 3 T33: 0.1271 T12: -0.0187 REMARK 3 T13: 0.0196 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 4.3281 L22: 7.0718 REMARK 3 L33: 4.4438 L12: 0.4380 REMARK 3 L13: 0.7894 L23: 2.5789 REMARK 3 S TENSOR REMARK 3 S11: -0.0948 S12: -0.0436 S13: 0.0894 REMARK 3 S21: -0.0076 S22: 0.1238 S23: -0.2281 REMARK 3 S31: -0.1516 S32: 0.2710 S33: -0.0291 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 82 A 103 REMARK 3 ORIGIN FOR THE GROUP (A): 36.7177 -7.2040 2.0770 REMARK 3 T TENSOR REMARK 3 T11: 0.1597 T22: 0.0964 REMARK 3 T33: 0.1113 T12: 0.0020 REMARK 3 T13: 0.0036 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.9479 L22: 1.5383 REMARK 3 L33: 1.3104 L12: 0.5922 REMARK 3 L13: 0.1862 L23: 0.8551 REMARK 3 S TENSOR REMARK 3 S11: -0.0553 S12: -0.0233 S13: -0.0030 REMARK 3 S21: -0.0062 S22: 0.0116 S23: 0.0558 REMARK 3 S31: 0.0516 S32: 0.0051 S33: 0.0438 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 104 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8778 -14.3174 -15.2822 REMARK 3 T TENSOR REMARK 3 T11: 0.2230 T22: 0.1668 REMARK 3 T33: 0.0704 T12: -0.0730 REMARK 3 T13: -0.0066 T23: -0.0380 REMARK 3 L TENSOR REMARK 3 L11: 3.4423 L22: 8.8363 REMARK 3 L33: 6.8544 L12: -1.2482 REMARK 3 L13: -1.3447 L23: 2.8243 REMARK 3 S TENSOR REMARK 3 S11: -0.2456 S12: 0.6731 S13: -0.2570 REMARK 3 S21: -0.5472 S22: 0.0623 S23: -0.0338 REMARK 3 S31: 0.2443 S32: 0.1629 S33: 0.1833 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): 32.7953 -19.5978 -5.5498 REMARK 3 T TENSOR REMARK 3 T11: 0.1275 T22: 0.0988 REMARK 3 T33: 0.1744 T12: -0.0201 REMARK 3 T13: -0.0046 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 1.5941 L22: 2.5636 REMARK 3 L33: 8.2991 L12: 0.5218 REMARK 3 L13: -1.5102 L23: 1.3408 REMARK 3 S TENSOR REMARK 3 S11: 0.0414 S12: 0.1487 S13: -0.1423 REMARK 3 S21: -0.2089 S22: -0.0399 S23: -0.0141 REMARK 3 S31: 0.1522 S32: 0.2178 S33: -0.0016 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 126 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 30.5895 -6.4930 4.8233 REMARK 3 T TENSOR REMARK 3 T11: 0.1482 T22: 0.1174 REMARK 3 T33: 0.1298 T12: -0.0288 REMARK 3 T13: 0.0316 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 2.2999 L22: 2.6364 REMARK 3 L33: 2.0314 L12: 0.0139 REMARK 3 L13: 0.3132 L23: 0.5991 REMARK 3 S TENSOR REMARK 3 S11: -0.0721 S12: -0.1556 S13: -0.0171 REMARK 3 S21: 0.1372 S22: -0.0718 S23: 0.2771 REMARK 3 S31: 0.0699 S32: -0.2403 S33: 0.1439 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): 33.3545 9.1625 12.5515 REMARK 3 T TENSOR REMARK 3 T11: 0.1724 T22: 0.1004 REMARK 3 T33: 0.1312 T12: 0.0353 REMARK 3 T13: 0.0072 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 5.3688 L22: 4.1965 REMARK 3 L33: 3.7783 L12: 0.8703 REMARK 3 L13: 1.9977 L23: -0.3154 REMARK 3 S TENSOR REMARK 3 S11: 0.1016 S12: -0.3345 S13: 0.0007 REMARK 3 S21: 0.2589 S22: -0.1095 S23: 0.2396 REMARK 3 S31: -0.0709 S32: -0.2373 S33: 0.0079 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IIL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054456. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.04498 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 WITH SAGITTAL FOCUSSING REMARK 200 OPTICS : RH COATED MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22102 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 34.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 20.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46100 REMARK 200 FOR SHELL : 4.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1RKB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 1.5 M LI2SO4, 0.2 REMARK 280 M NACL, 0.5 MM DTT, 25 MM MGCL2, 25 MM P1,P5-DI(ADENOSINE-5') REMARK 280 PENTAPHOSPHATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.34933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.69867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.02400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.37333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 9.67467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 PRO A -6 REMARK 465 LEU A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 237 O HOH A 355 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 0 15.75 59.66 REMARK 500 ASP A 52 77.86 51.41 REMARK 500 CYS A 53 148.09 -173.41 REMARK 500 CYS A 81 -2.58 -160.13 REMARK 500 SER A 146 59.71 -141.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 175 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A -1 O REMARK 620 2 HOH A 351 O 66.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 177 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 17 OG1 REMARK 620 2 ADP A 174 O3B 84.6 REMARK 620 3 HOH A 206 O 90.1 100.1 REMARK 620 4 HOH A 213 O 177.4 96.3 87.3 REMARK 620 5 HOH A 220 O 88.3 84.9 174.5 94.3 REMARK 620 6 HOH A 221 O 88.2 170.4 86.3 91.1 88.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LI A 173 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 174 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 175 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 176 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 177 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 178 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 179 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 180 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 181 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 182 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RKB RELATED DB: PDB REMARK 900 THE STRUCTURE OF ADRENAL GLAND PROTEIN AD-004 REMARK 900 RELATED ID: 3IIJ RELATED DB: PDB REMARK 900 THE STRUCTURE OF HCINAP-ADP COMPLEX AT 1.76 ANGSTROMS RESOLUTION. REMARK 900 RELATED ID: 3IIK RELATED DB: PDB REMARK 900 THE STRUCTURE OF HCINAP-SO4 COMPLEX AT 1.95 ANGSTROMS RESOLUTION REMARK 900 RELATED ID: 3IIM RELATED DB: PDB REMARK 900 THE STRUCTURE OF HCINAP-DADP COMPLEX AT 2.0 ANGSTROMS RESOLUTION DBREF 3IIL A 1 172 UNP Q5F2S9 Q5F2S9_HUMAN 1 172 SEQADV 3IIL GLY A -7 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIL PRO A -6 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIL LEU A -5 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIL GLY A -4 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIL SER A -3 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIL PRO A -2 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIL GLU A -1 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIL PHE A 0 UNP Q5F2S9 EXPRESSION TAG SEQRES 1 A 180 GLY PRO LEU GLY SER PRO GLU PHE MET LEU LEU PRO ASN SEQRES 2 A 180 ILE LEU LEU THR GLY THR PRO GLY VAL GLY LYS THR THR SEQRES 3 A 180 LEU GLY LYS GLU LEU ALA SER LYS SER GLY LEU LYS TYR SEQRES 4 A 180 ILE ASN VAL GLY ASP LEU ALA ARG GLU GLU GLN LEU TYR SEQRES 5 A 180 ASP GLY TYR ASP GLU GLU TYR ASP CYS PRO ILE LEU ASP SEQRES 6 A 180 GLU ASP ARG VAL VAL ASP GLU LEU ASP ASN GLN MET ARG SEQRES 7 A 180 GLU GLY GLY VAL ILE VAL ASP TYR HIS GLY CYS ASP PHE SEQRES 8 A 180 PHE PRO GLU ARG TRP PHE HIS ILE VAL PHE VAL LEU ARG SEQRES 9 A 180 THR ASP THR ASN VAL LEU TYR GLU ARG LEU GLU THR ARG SEQRES 10 A 180 GLY TYR ASN GLU LYS LYS LEU THR ASP ASN ILE GLN CYS SEQRES 11 A 180 GLU ILE PHE GLN VAL LEU TYR GLU GLU ALA THR ALA SER SEQRES 12 A 180 TYR LYS GLU GLU ILE VAL HIS GLN LEU PRO SER ASN LYS SEQRES 13 A 180 PRO GLU GLU LEU GLU ASN ASN VAL ASP GLN ILE LEU LYS SEQRES 14 A 180 TRP ILE GLU GLN TRP ILE LYS ASP HIS ASN SER HET LI A 173 1 HET ADP A 174 27 HET MG A 175 1 HET MG A 176 1 HET MG A 177 1 HET PO4 A 178 5 HET SO4 A 179 5 HET SO4 A 180 5 HET SO4 A 181 5 HET SO4 A 182 5 HETNAM LI LITHIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETNAM SO4 SULFATE ION FORMUL 2 LI LI 1+ FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG 3(MG 2+) FORMUL 7 PO4 O4 P 3- FORMUL 8 SO4 4(O4 S 2-) FORMUL 12 HOH *201(H2 O) HELIX 1 1 GLY A 15 GLY A 28 1 14 HELIX 2 2 VAL A 34 GLU A 41 1 8 HELIX 3 3 ASP A 57 GLY A 72 1 16 HELIX 4 4 PRO A 85 PHE A 89 5 5 HELIX 5 5 ASP A 98 ARG A 109 1 12 HELIX 6 6 ASN A 112 PHE A 125 1 14 HELIX 7 7 GLN A 126 TYR A 136 1 11 HELIX 8 8 LYS A 137 GLU A 139 5 3 HELIX 9 9 LYS A 148 HIS A 170 1 23 SHEET 1 A 5 LYS A 30 ASN A 33 0 SHEET 2 A 5 VAL A 74 ASP A 77 1 O ILE A 75 N LYS A 30 SHEET 3 A 5 ILE A 6 THR A 9 1 N LEU A 8 O VAL A 76 SHEET 4 A 5 ILE A 91 ARG A 96 1 O PHE A 93 N LEU A 7 SHEET 5 A 5 VAL A 141 PRO A 145 1 O LEU A 144 N ARG A 96 SHEET 1 B 2 TYR A 44 ASP A 48 0 SHEET 2 B 2 CYS A 53 LEU A 56 -1 O ILE A 55 N GLY A 46 LINK O GLU A -1 MG MG A 175 1555 1555 2.27 LINK OG1 THR A 17 MG MG A 177 1555 1555 2.15 LINK LI LI A 173 O HOH A 208 1555 1555 2.14 LINK O3B ADP A 174 MG MG A 177 1555 1555 2.11 LINK MG MG A 175 O HOH A 351 1555 1555 2.60 LINK MG MG A 176 O HOH A 363 1555 1555 2.71 LINK MG MG A 177 O HOH A 206 1555 1555 2.09 LINK MG MG A 177 O HOH A 213 1555 1555 2.19 LINK MG MG A 177 O HOH A 220 1555 1555 2.18 LINK MG MG A 177 O HOH A 221 1555 1555 2.18 SITE 1 AC1 3 PRO A 12 TYR A 111 HOH A 208 SITE 1 AC2 21 GLY A 13 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC2 21 THR A 17 THR A 18 ARG A 105 ARG A 109 SITE 3 AC2 21 SER A 146 ASN A 147 LYS A 148 PRO A 149 SITE 4 AC2 21 LEU A 152 MG A 177 HOH A 204 HOH A 213 SITE 5 AC2 21 HOH A 220 HOH A 223 HOH A 227 HOH A 231 SITE 6 AC2 21 HOH A 313 SITE 1 AC3 3 PRO A -2 GLU A -1 HOH A 351 SITE 1 AC4 3 TYR A 51 ASP A 118 HOH A 363 SITE 1 AC5 6 THR A 17 ADP A 174 HOH A 206 HOH A 213 SITE 2 AC5 6 HOH A 220 HOH A 221 SITE 1 AC6 11 PRO A 12 LYS A 16 TYR A 78 HIS A 79 SITE 2 AC6 11 HOH A 203 HOH A 206 HOH A 208 HOH A 209 SITE 3 AC6 11 HOH A 211 HOH A 213 HOH A 246 SITE 1 AC7 6 TYR A 129 HIS A 142 GLN A 143 HOH A 277 SITE 2 AC7 6 HOH A 307 HOH A 323 SITE 1 AC8 4 LYS A 137 GLU A 138 GLU A 139 HOH A 341 SITE 1 AC9 3 ASN A 112 GLU A 113 HOH A 192 SITE 1 BC1 6 ARG A 60 HIS A 170 HOH A 222 HOH A 281 SITE 2 BC1 6 HOH A 328 HOH A 380 CRYST1 99.173 99.173 58.048 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010083 0.005822 0.000000 0.00000 SCALE2 0.000000 0.011643 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017227 0.00000