HEADER GENE REGULATION 04-AUG-09 3IJC TITLE CRYSTAL STRUCTURE OF EED IN COMPLEX WITH NDSB-195 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYCOMB PROTEIN EED; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EED RESIDUES 77-441; COMPND 5 SYNONYM: HEED, WD PROTEIN ASSOCIATING WITH INTEGRIN CYTOPLASMIC TAILS COMPND 6 1, WAIT-1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EED; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS WD40 DOMAIN, ALTERNATIVE INITIATION, ALTERNATIVE SPLICING, CHROMATIN KEYWDS 2 REGULATOR, NUCLEUS, PHOSPHOPROTEIN, REPRESSOR, TRANSCRIPTION, KEYWDS 3 TRANSCRIPTION REGULATION, WD REPEAT, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR N.JUSTIN,M.L.SHARPE,S.MARTIN,W.R.TAYLOR,V.DE MARCO,S.J.GAMBLIN REVDAT 5 03-APR-24 3IJC 1 REMARK REVDAT 4 21-FEB-24 3IJC 1 REMARK REVDAT 3 13-OCT-21 3IJC 1 REMARK SEQADV REVDAT 2 20-OCT-09 3IJC 1 JRNL REVDAT 1 15-SEP-09 3IJC 0 JRNL AUTH R.MARGUERON,N.JUSTIN,K.OHNO,M.L.SHARPE,J.SON,W.J.DRURY, JRNL AUTH 2 P.VOIGT,S.R.MARTIN,W.R.TAYLOR,V.DE MARCO,V.PIRROTTA, JRNL AUTH 3 D.REINBERG,S.J.GAMBLIN JRNL TITL ROLE OF THE POLYCOMB PROTEIN EED IN THE PROPAGATION OF JRNL TITL 2 REPRESSIVE HISTONE MARKS. JRNL REF NATURE V. 461 762 2009 JRNL REFN ISSN 0028-0836 JRNL PMID 19767730 JRNL DOI 10.1038/NATURE08398 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 31442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1680 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2113 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2895 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 238 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.690 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2979 ; 0.021 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4036 ; 1.680 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 355 ; 7.254 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;36.242 ;23.767 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 512 ;14.369 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;19.369 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 434 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2257 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1149 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1923 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 220 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 61 ; 0.188 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.124 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1867 ; 1.150 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2873 ; 1.782 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1348 ; 2.737 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1163 ; 4.087 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IJC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054483. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : VERTICALLY COLLIMATING REMARK 200 PREMIRROR, DOUBLE CRYSTAL SI(111) REMARK 200 MONOCHROMATOR WITH SAGITAL REMARK 200 FOCUSSING, VERTICAL FOCUSING REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31920 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.42600 REMARK 200 R SYM FOR SHELL (I) : 0.42600 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: SEMET EED STRUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M SODIUM FORMATE, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.90150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.61550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.66850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.61550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.90150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.66850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 77 REMARK 465 CYS A 78 REMARK 465 LYS A 79 REMARK 465 GLU A 107 REMARK 465 GLY A 108 REMARK 465 ASP A 109 REMARK 465 PRO A 110 REMARK 465 ARG A 441 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 232 NH2 ARG A 236 2.12 REMARK 500 OD2 ASP A 303 O HOH A 634 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 414 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 104 59.73 -97.33 REMARK 500 SER A 105 -33.03 130.16 REMARK 500 SER A 118 -140.26 53.21 REMARK 500 LEU A 135 -89.64 -98.06 REMARK 500 SER A 159 -8.26 57.89 REMARK 500 HIS A 213 -2.76 85.48 REMARK 500 PHE A 299 148.19 -177.07 REMARK 500 SER A 323 -160.53 -119.71 REMARK 500 TYR A 365 62.27 65.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDS A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QXV RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF EZH2 RECOGNITION BY EED REMARK 900 RELATED ID: 3IIW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EED IN COMPLEX WITH A TRIMETHYLATED HISTONE REMARK 900 H3K27 PEPTIDE REMARK 900 RELATED ID: 3IIY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EED IN COMPLEX WITH A TRIMETHYLATED HISTONE REMARK 900 H1K26 PEPTIDE REMARK 900 RELATED ID: 3IJ0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EED IN COMPLEX WITH A TRIMETHYLATED HISTONE REMARK 900 H3K9 PEPTIDE REMARK 900 RELATED ID: 3IJ1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EED IN COMPLEX WITH A TRIMETHYLATED HISTONE REMARK 900 H4K20 PEPTIDE DBREF 3IJC A 77 441 UNP O75530 EED_HUMAN 77 441 SEQADV 3IJC THR A 370 UNP O75530 MET 370 ENGINEERED MUTATION SEQRES 1 A 365 LYS CYS LYS TYR SER PHE LYS CYS VAL ASN SER LEU LYS SEQRES 2 A 365 GLU ASP HIS ASN GLN PRO LEU PHE GLY VAL GLN PHE ASN SEQRES 3 A 365 TRP HIS SER LYS GLU GLY ASP PRO LEU VAL PHE ALA THR SEQRES 4 A 365 VAL GLY SER ASN ARG VAL THR LEU TYR GLU CYS HIS SER SEQRES 5 A 365 GLN GLY GLU ILE ARG LEU LEU GLN SER TYR VAL ASP ALA SEQRES 6 A 365 ASP ALA ASP GLU ASN PHE TYR THR CYS ALA TRP THR TYR SEQRES 7 A 365 ASP SER ASN THR SER HIS PRO LEU LEU ALA VAL ALA GLY SEQRES 8 A 365 SER ARG GLY ILE ILE ARG ILE ILE ASN PRO ILE THR MET SEQRES 9 A 365 GLN CYS ILE LYS HIS TYR VAL GLY HIS GLY ASN ALA ILE SEQRES 10 A 365 ASN GLU LEU LYS PHE HIS PRO ARG ASP PRO ASN LEU LEU SEQRES 11 A 365 LEU SER VAL SER LYS ASP HIS ALA LEU ARG LEU TRP ASN SEQRES 12 A 365 ILE GLN THR ASP THR LEU VAL ALA ILE PHE GLY GLY VAL SEQRES 13 A 365 GLU GLY HIS ARG ASP GLU VAL LEU SER ALA ASP TYR ASP SEQRES 14 A 365 LEU LEU GLY GLU LYS ILE MET SER CYS GLY MET ASP HIS SEQRES 15 A 365 SER LEU LYS LEU TRP ARG ILE ASN SER LYS ARG MET MET SEQRES 16 A 365 ASN ALA ILE LYS GLU SER TYR ASP TYR ASN PRO ASN LYS SEQRES 17 A 365 THR ASN ARG PRO PHE ILE SER GLN LYS ILE HIS PHE PRO SEQRES 18 A 365 ASP PHE SER THR ARG ASP ILE HIS ARG ASN TYR VAL ASP SEQRES 19 A 365 CYS VAL ARG TRP LEU GLY ASP LEU ILE LEU SER LYS SER SEQRES 20 A 365 CYS GLU ASN ALA ILE VAL CYS TRP LYS PRO GLY LYS MET SEQRES 21 A 365 GLU ASP ASP ILE ASP LYS ILE LYS PRO SER GLU SER ASN SEQRES 22 A 365 VAL THR ILE LEU GLY ARG PHE ASP TYR SER GLN CYS ASP SEQRES 23 A 365 ILE TRP TYR MET ARG PHE SER THR ASP PHE TRP GLN LYS SEQRES 24 A 365 MET LEU ALA LEU GLY ASN GLN VAL GLY LYS LEU TYR VAL SEQRES 25 A 365 TRP ASP LEU GLU VAL GLU ASP PRO HIS LYS ALA LYS CYS SEQRES 26 A 365 THR THR LEU THR HIS HIS LYS CYS GLY ALA ALA ILE ARG SEQRES 27 A 365 GLN THR SER PHE SER ARG ASP SER SER ILE LEU ILE ALA SEQRES 28 A 365 VAL CYS ASP ASP ALA SER ILE TRP ARG TRP ASP ARG LEU SEQRES 29 A 365 ARG HET NDS A 500 12 HETNAM NDS ETHYL DIMETHYL AMMONIO PROPANE SULFONATE FORMUL 2 NDS C7 H17 N O3 S FORMUL 3 HOH *238(H2 O) HELIX 1 1 SER A 267 TYR A 280 1 14 HELIX 2 2 ASN A 281 THR A 285 5 5 HELIX 3 3 ASP A 339 ILE A 343 5 5 HELIX 4 4 ASP A 395 ALA A 399 5 5 SHEET 1 A 4 PHE A 82 LYS A 89 0 SHEET 2 A 4 SER A 433 ARG A 439 -1 O ILE A 434 N LEU A 88 SHEET 3 A 4 ILE A 424 CYS A 429 -1 N LEU A 425 O TRP A 437 SHEET 4 A 4 ILE A 413 PHE A 418 -1 N SER A 417 O ILE A 426 SHEET 1 B 4 LEU A 96 PHE A 101 0 SHEET 2 B 4 VAL A 112 GLY A 117 -1 O ALA A 114 N GLN A 100 SHEET 3 B 4 ARG A 120 CYS A 126 -1 O THR A 122 N THR A 115 SHEET 4 B 4 ILE A 132 VAL A 139 -1 O ARG A 133 N GLU A 125 SHEET 1 C 4 PHE A 147 TYR A 154 0 SHEET 2 C 4 PRO A 161 GLY A 167 -1 O ALA A 164 N ALA A 151 SHEET 3 C 4 ILE A 171 ASN A 176 -1 O ARG A 173 N VAL A 165 SHEET 4 C 4 GLN A 181 VAL A 187 -1 O ILE A 183 N ILE A 174 SHEET 1 D 5 ILE A 193 PHE A 198 0 SHEET 2 D 5 LEU A 205 SER A 210 -1 O LEU A 207 N LYS A 197 SHEET 3 D 5 LEU A 215 ASN A 219 -1 O TRP A 218 N LEU A 206 SHEET 4 D 5 THR A 224 PHE A 229 -1 O PHE A 229 N LEU A 215 SHEET 5 D 5 GLN A 292 ILE A 294 1 O ILE A 294 N ILE A 228 SHEET 1 E 4 VAL A 239 TYR A 244 0 SHEET 2 E 4 LYS A 250 GLY A 255 -1 O MET A 252 N ASP A 243 SHEET 3 E 4 LEU A 260 ARG A 264 -1 O LYS A 261 N SER A 253 SHEET 4 E 4 PHE A 299 THR A 301 -1 O THR A 301 N LEU A 260 SHEET 1 F 4 CYS A 311 LEU A 315 0 SHEET 2 F 4 LEU A 318 LYS A 322 -1 O LEU A 320 N ARG A 313 SHEET 3 F 4 ALA A 327 PRO A 333 -1 O TRP A 331 N ILE A 319 SHEET 4 F 4 VAL A 350 ASP A 357 -1 O LEU A 353 N CYS A 330 SHEET 1 G 4 SER A 369 THR A 370 0 SHEET 2 G 4 MET A 376 GLY A 380 -1 O ALA A 378 N SER A 369 SHEET 3 G 4 LEU A 386 ASP A 390 -1 O TRP A 389 N LEU A 377 SHEET 4 G 4 LYS A 400 LEU A 404 -1 O THR A 402 N VAL A 388 SITE 1 AC1 6 PHE A 97 TYR A 148 ASN A 194 TRP A 364 SITE 2 AC1 6 TYR A 365 ARG A 414 CRYST1 57.803 85.337 91.231 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017300 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011718 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010961 0.00000