HEADER SIGNALING PROTEIN 07-AUG-09 3ILZ TITLE STRUCTURE OF TR-ALFA BOUND TO SELECTIVE THYROMIMETIC GC-1 IN P212121 TITLE 2 SPACE GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYROID HORMONE RECEPTOR, ALPHA ISOFORM 1 VARIANT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR1A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS NUCLEAR RECEPTOR, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.APARICIO,L.POLIKARPOV,L.BLEICHER REVDAT 2 06-SEP-23 3ILZ 1 REMARK SEQADV LINK REVDAT 1 28-APR-10 3ILZ 0 JRNL AUTH L.BLEICHER,R.APARICIO,F.M.NUNES,L.MARTINEZ,S.M.GOMES DIAS, JRNL AUTH 2 A.C.FIGUEIRA,M.A.SANTOS,W.H.VENTURELLI,R.DA SILVA, JRNL AUTH 3 P.M.DONATE,F.A.NEVES,L.A.SIMEONI,J.D.BAXTER,P.WEBB,M.S.SKAF, JRNL AUTH 4 I.POLIKARPOV JRNL TITL STRUCTURAL BASIS OF GC-1 SELECTIVITY FOR THYROID HORMONE JRNL TITL 2 RECEPTOR ISOFORMS. JRNL REF BMC STRUCT.BIOL. V. 8 8 2008 JRNL REFN ESSN 1472-6807 JRNL PMID 18237438 JRNL DOI 10.1186/1472-6807-8-8 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 45966 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2172 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2964 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2136 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 477 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : -0.36000 REMARK 3 B33 (A**2) : 0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.763 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2222 ; 0.037 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2060 ; 0.013 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3007 ; 3.078 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4809 ; 3.047 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 263 ; 7.429 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 337 ; 0.171 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2391 ; 0.026 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 419 ; 0.039 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 624 ; 0.274 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2496 ; 0.273 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1244 ; 0.135 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 376 ; 0.275 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.101 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 73 ; 0.253 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 39 ; 0.251 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1330 ; 1.719 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2177 ; 2.813 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 892 ; 4.262 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 830 ; 6.155 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 145 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): 11.7640 1.8070 53.2590 REMARK 3 T TENSOR REMARK 3 T11: 0.1653 T22: 0.1716 REMARK 3 T33: 0.1493 T12: -0.0020 REMARK 3 T13: 0.0369 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 15.5356 L22: 1.9318 REMARK 3 L33: 12.7321 L12: -2.8852 REMARK 3 L13: -5.7730 L23: 2.6542 REMARK 3 S TENSOR REMARK 3 S11: -0.4226 S12: 1.0423 S13: -0.0974 REMARK 3 S21: 0.3068 S22: 0.2187 S23: 0.1847 REMARK 3 S31: 0.4183 S32: -0.1105 S33: 0.2039 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 157 A 410 REMARK 3 ORIGIN FOR THE GROUP (A): 27.7750 30.0920 35.2440 REMARK 3 T TENSOR REMARK 3 T11: 0.0112 T22: 0.0407 REMARK 3 T33: 0.0284 T12: 0.0115 REMARK 3 T13: -0.0023 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.8673 L22: 1.0774 REMARK 3 L33: 0.9719 L12: 0.1832 REMARK 3 L13: -0.3200 L23: -0.5351 REMARK 3 S TENSOR REMARK 3 S11: -0.0154 S12: 0.0508 S13: 0.1153 REMARK 3 S21: -0.0045 S22: 0.0383 S23: 0.0775 REMARK 3 S31: -0.0631 S32: -0.0705 S33: -0.0229 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 1 REMARK 3 ORIGIN FOR THE GROUP (A): 27.7580 38.2900 31.8240 REMARK 3 T TENSOR REMARK 3 T11: 0.1780 T22: 0.1733 REMARK 3 T33: 0.1776 T12: -0.0036 REMARK 3 T13: -0.0070 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: -4.7290 L22: -0.1656 REMARK 3 L33: 7.8570 L12: 0.9619 REMARK 3 L13: -0.0246 L23: -8.7378 REMARK 3 S TENSOR REMARK 3 S11: 0.4586 S12: 0.4514 S13: 0.7844 REMARK 3 S21: 0.1362 S22: 0.0357 S23: 0.3880 REMARK 3 S31: -0.6465 S32: -0.5489 S33: -0.4944 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ILZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000054577. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU ULTRAX 18 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47773 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 31.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.38300 REMARK 200 R SYM FOR SHELL (I) : 0.38300 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1BSX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0M NACAC 0.1M NAH3OAC, PH 7.2, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.95700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.44300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.17550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.44300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.95700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.17550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 388 N REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 SER A 183 REMARK 475 HIS A 184 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLY A 182 C O REMARK 480 GLN A 187 CB CG CD OE1 NE2 REMARK 480 ARG A 189 CZ NH1 NH2 REMARK 480 LYS A 190 CE NZ REMARK 480 LYS A 220 CD CE NZ REMARK 480 GLU A 285 CD OE1 OE2 REMARK 480 LYS A 304 CD CE NZ REMARK 480 GLN A 408 CG CD OE1 NE2 REMARK 480 GLU A 409 CD OE1 OE2 REMARK 480 VAL A 410 OXT REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 460 O HOH A 705 4456 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 183 -39.52 -131.16 REMARK 500 ARG A 188 -92.81 -58.94 REMARK 500 ARG A 189 -154.83 -84.25 REMARK 500 GLU A 279 -26.86 -145.54 REMARK 500 CAS A 334 57.16 -90.54 REMARK 500 ASP A 407 78.27 71.57 REMARK 500 GLU A 409 -37.94 179.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B72 A 1 DBREF 3ILZ A 148 410 UNP Q59FW3 Q59FW3_HUMAN 135 397 SEQADV 3ILZ GLY A 144 UNP Q59FW3 EXPRESSION TAG SEQADV 3ILZ SER A 145 UNP Q59FW3 EXPRESSION TAG SEQADV 3ILZ HIS A 146 UNP Q59FW3 EXPRESSION TAG SEQADV 3ILZ MET A 147 UNP Q59FW3 EXPRESSION TAG SEQRES 1 A 267 GLY SER HIS MET GLU GLU MET ILE ARG SER LEU GLN GLN SEQRES 2 A 267 ARG PRO GLU PRO THR PRO GLU GLU TRP ASP LEU ILE HIS SEQRES 3 A 267 ILE ALA THR GLU ALA HIS ARG SER THR ASN ALA GLN GLY SEQRES 4 A 267 SER HIS TRP LYS GLN ARG ARG LYS PHE LEU PRO ASP ASP SEQRES 5 A 267 ILE GLY GLN SER PRO ILE VAL SER MET PRO ASP GLY ASP SEQRES 6 A 267 LYS VAL ASP LEU GLU ALA PHE SER GLU PHE THR LYS ILE SEQRES 7 A 267 ILE THR PRO ALA ILE THR ARG VAL VAL ASP PHE ALA LYS SEQRES 8 A 267 LYS LEU PRO MET PHE SER GLU LEU PRO CAS GLU ASP GLN SEQRES 9 A 267 ILE ILE LEU LEU LYS GLY CYS CYS MET GLU ILE MET SER SEQRES 10 A 267 LEU ARG ALA ALA VAL ARG TYR ASP PRO GLU SER ASP THR SEQRES 11 A 267 LEU THR LEU SER GLY GLU MET ALA VAL LYS ARG GLU GLN SEQRES 12 A 267 LEU LYS ASN GLY GLY LEU GLY VAL VAL SER ASP ALA ILE SEQRES 13 A 267 PHE GLU LEU GLY LYS SER LEU SER ALA PHE ASN LEU ASP SEQRES 14 A 267 ASP THR GLU VAL ALA LEU LEU GLN ALA VAL LEU LEU MET SEQRES 15 A 267 SER THR ASP ARG SER GLY LEU LEU CAS VAL ASP LYS ILE SEQRES 16 A 267 GLU LYS SER GLN GLU ALA TYR LEU LEU ALA PHE GLU HIS SEQRES 17 A 267 TYR VAL ASN HIS ARG LYS HIS ASN ILE PRO HIS PHE TRP SEQRES 18 A 267 PRO LYS LEU LEU MET LYS VAL THR ASP LEU ARG MET ILE SEQRES 19 A 267 GLY ALA CAS HIS ALA SER ARG PHE LEU HIS MET LYS VAL SEQRES 20 A 267 GLU CAS PRO THR GLU LEU PHE PRO PRO LEU PHE LEU GLU SEQRES 21 A 267 VAL PHE GLU ASP GLN GLU VAL MODRES 3ILZ CAS A 244 CYS S-(DIMETHYLARSENIC)CYSTEINE MODRES 3ILZ CAS A 334 CYS S-(DIMETHYLARSENIC)CYSTEINE MODRES 3ILZ CAS A 380 CYS S-(DIMETHYLARSENIC)CYSTEINE MODRES 3ILZ CAS A 392 CYS S-(DIMETHYLARSENIC)CYSTEINE HET CAS A 244 9 HET CAS A 334 9 HET CAS A 380 9 HET CAS A 392 9 HET B72 A 1 26 HETNAM CAS S-(DIMETHYLARSENIC)CYSTEINE HETNAM B72 {4-[4-HYDROXY-3-(1-METHYLETHYL)BENZYL]-3,5- HETNAM 2 B72 DIMETHYLPHENOXY}ACETIC ACID FORMUL 1 CAS 4(C5 H12 AS N O2 S) FORMUL 2 B72 C20 H24 O4 FORMUL 3 HOH *477(H2 O) HELIX 1 1 SER A 145 ARG A 152 1 8 HELIX 2 2 THR A 161 SER A 177 1 17 HELIX 3 3 ASP A 211 LYS A 235 1 25 HELIX 4 4 LEU A 236 GLU A 241 1 6 HELIX 5 5 PRO A 243 VAL A 265 1 23 HELIX 6 6 LYS A 283 GLY A 290 1 8 HELIX 7 7 GLY A 293 SER A 307 1 15 HELIX 8 8 ALA A 308 ASN A 310 5 3 HELIX 9 9 ASP A 312 MET A 325 1 14 HELIX 10 10 CAS A 334 LYS A 357 1 24 HELIX 11 11 HIS A 362 HIS A 387 1 26 HELIX 12 12 MET A 388 CAS A 392 1 5 HELIX 13 13 PRO A 393 PHE A 397 5 5 HELIX 14 14 PRO A 398 PHE A 405 1 8 SHEET 1 A 3 LYS A 190 PHE A 191 0 SHEET 2 A 3 MET A 280 VAL A 282 1 O ALA A 281 N LYS A 190 SHEET 3 A 3 LEU A 274 LEU A 276 -1 N LEU A 276 O MET A 280 LINK C PRO A 243 N CAS A 244 1555 1555 1.33 LINK C CAS A 244 N GLU A 245 1555 1555 1.32 LINK C LEU A 333 N CAS A 334 1555 1555 1.33 LINK C CAS A 334 N VAL A 335 1555 1555 1.32 LINK C ALA A 379 N CAS A 380 1555 1555 1.33 LINK C CAS A 380 N HIS A 381 1555 1555 1.33 LINK C GLU A 391 N CAS A 392 1555 1555 1.33 LINK C CAS A 392 N PRO A 393 1555 1555 1.35 SITE 1 AC1 19 HOH A 8 HOH A 28 HOH A 124 PHE A 218 SITE 2 AC1 19 ILE A 222 ALA A 225 ARG A 228 MET A 256 SITE 3 AC1 19 MET A 259 ARG A 262 ARG A 266 LEU A 276 SITE 4 AC1 19 SER A 277 GLY A 278 GLY A 290 GLY A 291 SITE 5 AC1 19 HIS A 381 PHE A 401 HOH A 672 CRYST1 59.914 80.351 102.886 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016691 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012445 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009719 0.00000