data_3IM0 # _entry.id 3IM0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3IM0 pdb_00003im0 10.2210/pdb3im0/pdb RCSB RCSB054578 ? ? WWPDB D_1000054578 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3GNE 'Ligand-free vAL-1' unspecified PDB 3A0N 'D-glucuronic acid-bound vAL-1 at pH 7.0' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3IM0 _pdbx_database_status.recvd_initial_deposition_date 2009-08-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ogura, K.' 1 'Yamasaki, M.' 2 'Hashidume, T.' 3 'Yamada, T.' 4 'Mikami, B.' 5 'Hashimoto, W.' 6 'Murata, K.' 7 # _citation.id primary _citation.title 'Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 284 _citation.page_first 35572 _citation.page_last 35579 _citation.year 2009 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19846561 _citation.pdbx_database_id_DOI 10.1074/jbc.M109.068056 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ogura, K.' 1 ? primary 'Yamasaki, M.' 2 ? primary 'Yamada, T.' 3 ? primary 'Mikami, B.' 4 ? primary 'Hashimoto, W.' 5 ? primary 'Murata, K.' 6 ? # _cell.entry_id 3IM0 _cell.length_a 40.402 _cell.length_b 71.121 _cell.length_c 100.705 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3IM0 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man VAL-1 28042.572 1 4.2.2.3 ? 'C-terminal domain, UNP residues 106-349' ? 2 non-polymer man 'beta-D-glucopyranuronic acid' 194.139 1 ? ? ? ? 3 water nat water 18.015 453 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'alginate lyase vAL-1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TNVISTLDLNLLTKGGGSWNVDGVNMKKSAVTTFDGKRVVKAVYDKNSGTSANPGVGGFSFSAVPDGLNKNAITFAWEVF YPKGFDFARGGKHGGTFIGHGAASGYQHSKTGASNRIMWQEKGGVIDYIYPPSDLKQKIPGLDPEGHGIGFFQDDFKNAL KYDVWNRIEIGTKMNTFKNGIPQLDGESYVIVNGKKEVLKRINWSRSPDLLISRFDWNTFFGGPLPSPKNQVAYFTNFQM KKYELEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;TNVISTLDLNLLTKGGGSWNVDGVNMKKSAVTTFDGKRVVKAVYDKNSGTSANPGVGGFSFSAVPDGLNKNAITFAWEVF YPKGFDFARGGKHGGTFIGHGAASGYQHSKTGASNRIMWQEKGGVIDYIYPPSDLKQKIPGLDPEGHGIGFFQDDFKNAL KYDVWNRIEIGTKMNTFKNGIPQLDGESYVIVNGKKEVLKRINWSRSPDLLISRFDWNTFFGGPLPSPKNQVAYFTNFQM KKYELEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 ASN n 1 3 VAL n 1 4 ILE n 1 5 SER n 1 6 THR n 1 7 LEU n 1 8 ASP n 1 9 LEU n 1 10 ASN n 1 11 LEU n 1 12 LEU n 1 13 THR n 1 14 LYS n 1 15 GLY n 1 16 GLY n 1 17 GLY n 1 18 SER n 1 19 TRP n 1 20 ASN n 1 21 VAL n 1 22 ASP n 1 23 GLY n 1 24 VAL n 1 25 ASN n 1 26 MET n 1 27 LYS n 1 28 LYS n 1 29 SER n 1 30 ALA n 1 31 VAL n 1 32 THR n 1 33 THR n 1 34 PHE n 1 35 ASP n 1 36 GLY n 1 37 LYS n 1 38 ARG n 1 39 VAL n 1 40 VAL n 1 41 LYS n 1 42 ALA n 1 43 VAL n 1 44 TYR n 1 45 ASP n 1 46 LYS n 1 47 ASN n 1 48 SER n 1 49 GLY n 1 50 THR n 1 51 SER n 1 52 ALA n 1 53 ASN n 1 54 PRO n 1 55 GLY n 1 56 VAL n 1 57 GLY n 1 58 GLY n 1 59 PHE n 1 60 SER n 1 61 PHE n 1 62 SER n 1 63 ALA n 1 64 VAL n 1 65 PRO n 1 66 ASP n 1 67 GLY n 1 68 LEU n 1 69 ASN n 1 70 LYS n 1 71 ASN n 1 72 ALA n 1 73 ILE n 1 74 THR n 1 75 PHE n 1 76 ALA n 1 77 TRP n 1 78 GLU n 1 79 VAL n 1 80 PHE n 1 81 TYR n 1 82 PRO n 1 83 LYS n 1 84 GLY n 1 85 PHE n 1 86 ASP n 1 87 PHE n 1 88 ALA n 1 89 ARG n 1 90 GLY n 1 91 GLY n 1 92 LYS n 1 93 HIS n 1 94 GLY n 1 95 GLY n 1 96 THR n 1 97 PHE n 1 98 ILE n 1 99 GLY n 1 100 HIS n 1 101 GLY n 1 102 ALA n 1 103 ALA n 1 104 SER n 1 105 GLY n 1 106 TYR n 1 107 GLN n 1 108 HIS n 1 109 SER n 1 110 LYS n 1 111 THR n 1 112 GLY n 1 113 ALA n 1 114 SER n 1 115 ASN n 1 116 ARG n 1 117 ILE n 1 118 MET n 1 119 TRP n 1 120 GLN n 1 121 GLU n 1 122 LYS n 1 123 GLY n 1 124 GLY n 1 125 VAL n 1 126 ILE n 1 127 ASP n 1 128 TYR n 1 129 ILE n 1 130 TYR n 1 131 PRO n 1 132 PRO n 1 133 SER n 1 134 ASP n 1 135 LEU n 1 136 LYS n 1 137 GLN n 1 138 LYS n 1 139 ILE n 1 140 PRO n 1 141 GLY n 1 142 LEU n 1 143 ASP n 1 144 PRO n 1 145 GLU n 1 146 GLY n 1 147 HIS n 1 148 GLY n 1 149 ILE n 1 150 GLY n 1 151 PHE n 1 152 PHE n 1 153 GLN n 1 154 ASP n 1 155 ASP n 1 156 PHE n 1 157 LYS n 1 158 ASN n 1 159 ALA n 1 160 LEU n 1 161 LYS n 1 162 TYR n 1 163 ASP n 1 164 VAL n 1 165 TRP n 1 166 ASN n 1 167 ARG n 1 168 ILE n 1 169 GLU n 1 170 ILE n 1 171 GLY n 1 172 THR n 1 173 LYS n 1 174 MET n 1 175 ASN n 1 176 THR n 1 177 PHE n 1 178 LYS n 1 179 ASN n 1 180 GLY n 1 181 ILE n 1 182 PRO n 1 183 GLN n 1 184 LEU n 1 185 ASP n 1 186 GLY n 1 187 GLU n 1 188 SER n 1 189 TYR n 1 190 VAL n 1 191 ILE n 1 192 VAL n 1 193 ASN n 1 194 GLY n 1 195 LYS n 1 196 LYS n 1 197 GLU n 1 198 VAL n 1 199 LEU n 1 200 LYS n 1 201 ARG n 1 202 ILE n 1 203 ASN n 1 204 TRP n 1 205 SER n 1 206 ARG n 1 207 SER n 1 208 PRO n 1 209 ASP n 1 210 LEU n 1 211 LEU n 1 212 ILE n 1 213 SER n 1 214 ARG n 1 215 PHE n 1 216 ASP n 1 217 TRP n 1 218 ASN n 1 219 THR n 1 220 PHE n 1 221 PHE n 1 222 GLY n 1 223 GLY n 1 224 PRO n 1 225 LEU n 1 226 PRO n 1 227 SER n 1 228 PRO n 1 229 LYS n 1 230 ASN n 1 231 GLN n 1 232 VAL n 1 233 ALA n 1 234 TYR n 1 235 PHE n 1 236 THR n 1 237 ASN n 1 238 PHE n 1 239 GLN n 1 240 MET n 1 241 LYS n 1 242 LYS n 1 243 TYR n 1 244 GLU n 1 245 LEU n 1 246 GLU n 1 247 HIS n 1 248 HIS n 1 249 HIS n 1 250 HIS n 1 251 HIS n 1 252 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene vAL-1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain CVK-2 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Chlorella virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 31555 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9DTZ2_9PHYC _struct_ref.pdbx_db_accession Q9DTZ2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TNVISTLDLNLLTKGGGSWNVDGVNMKKSAVTTFDGKRVVKAVYDKNSGTSANPGVGGFSFSAVPDGLNKNAITFAWEVF YPKGFDFARGGKHGGTFIGHGAASGYQHSKTGASNRIMWQEKGGVIDYIYPPSDLKQKIPGLDPEGHGIGFFQDDFKNAL KYDVWNRIEIGTKMNTFKNGIPQLDGESYVIVNGKKEVLKRINWSRSPDLLISRFDWNTFFGGPLPSPKNQVAYFTNFQM KKYE ; _struct_ref.pdbx_align_begin 106 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3IM0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 244 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9DTZ2 _struct_ref_seq.db_align_beg 106 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 349 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 244 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3IM0 LEU A 245 ? UNP Q9DTZ2 ? ? 'expression tag' 245 1 1 3IM0 GLU A 246 ? UNP Q9DTZ2 ? ? 'expression tag' 246 2 1 3IM0 HIS A 247 ? UNP Q9DTZ2 ? ? 'expression tag' 247 3 1 3IM0 HIS A 248 ? UNP Q9DTZ2 ? ? 'expression tag' 248 4 1 3IM0 HIS A 249 ? UNP Q9DTZ2 ? ? 'expression tag' 249 5 1 3IM0 HIS A 250 ? UNP Q9DTZ2 ? ? 'expression tag' 250 6 1 3IM0 HIS A 251 ? UNP Q9DTZ2 ? ? 'expression tag' 251 7 1 3IM0 HIS A 252 ? UNP Q9DTZ2 ? ? 'expression tag' 252 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BDP 'D-saccharide, beta linking' . 'beta-D-glucopyranuronic acid' 'beta-D-glucuronic acid; D-glucuronic acid; glucuronic acid' 'C6 H10 O7' 194.139 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3IM0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.58 _exptl_crystal.density_percent_sol 52.32 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '12% PEG 3350, 0.2M ammonium formate, 0.1M hepes-NaOH pH7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2009-06-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Fixed exit Si 111 double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL38B1' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL38B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1 # _reflns.entry_id 3IM0 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 26.32 _reflns.d_resolution_high 1.66 _reflns.number_obs 34464 _reflns.number_all 34464 _reflns.percent_possible_obs 97.5 _reflns.pdbx_Rmerge_I_obs 0.040 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 74.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.66 _reflns_shell.d_res_low 1.72 _reflns_shell.percent_possible_all 97.5 _reflns_shell.Rmerge_I_obs 0.144 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 16.5 _reflns_shell.pdbx_redundancy 5.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 3330 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3IM0 _refine.ls_number_reflns_obs 32576 _refine.ls_number_reflns_all 32576 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.00 _refine.ls_d_res_high 1.66 _refine.ls_percent_reflns_obs 93.0 _refine.ls_R_factor_obs 0.1634 _refine.ls_R_factor_all 0.1634 _refine.ls_R_factor_R_work 0.1606 _refine.ls_R_factor_R_free 0.2163 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 1711 _refine.ls_number_parameters 9879 _refine.ls_number_restraints 8643 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3GNE' _refine.pdbx_method_to_determine_struct 'AB INITIO' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3IM0 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 14 _refine_analyze.occupancy_sum_hydrogen 0.00 _refine_analyze.occupancy_sum_non_hydrogen 2363.52 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1901 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 453 _refine_hist.number_atoms_total 2366 _refine_hist.d_res_high 1.66 _refine_hist.d_res_low 10.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.025 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0302 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.050 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.061 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.009 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.059 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.000 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 3IM0 _pdbx_refine.R_factor_all_no_cutoff 0.1634 _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.1597 _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 31335 # _struct.entry_id 3IM0 _struct.title 'Crystal structure of Chlorella virus vAL-1 soaked in 200mM D-glucuronic acid, 10% PEG-3350, and 200mM glycine-NaOH (pH 10.0)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3IM0 _struct_keywords.pdbx_keywords LYASE _struct_keywords.text 'alginate lyase, polysaccharide lyase family 14, chlorella virus, LYASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 8 ? GLY A 15 ? ASP A 8 GLY A 15 5 ? 8 HELX_P HELX_P2 2 GLY A 16 ? TRP A 19 ? GLY A 16 TRP A 19 5 ? 4 HELX_P HELX_P3 3 GLU A 121 ? GLY A 123 ? GLU A 121 GLY A 123 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 222 A . ? GLY 222 A GLY 223 A ? GLY 223 A 1 -6.92 2 GLY 223 A . ? GLY 223 A PRO 224 A ? PRO 224 A 1 -2.47 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 7 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel C 6 7 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 3 ? THR A 6 ? VAL A 3 THR A 6 A 2 GLN A 231 ? LYS A 241 ? GLN A 231 LYS A 241 A 3 LYS A 37 ? TYR A 44 ? LYS A 37 TYR A 44 A 4 ALA A 30 ? PHE A 34 ? ALA A 30 PHE A 34 B 1 VAL A 3 ? THR A 6 ? VAL A 3 THR A 6 B 2 GLN A 231 ? LYS A 241 ? GLN A 231 LYS A 241 B 3 ALA A 72 ? PHE A 80 ? ALA A 72 PHE A 80 B 4 ASN A 166 ? LYS A 173 ? ASN A 166 LYS A 173 B 5 GLY A 186 ? VAL A 192 ? GLY A 186 VAL A 192 B 6 LYS A 195 ? ILE A 202 ? LYS A 195 ILE A 202 C 1 VAL A 21 ? ASN A 25 ? VAL A 21 ASN A 25 C 2 PHE A 59 ? ALA A 63 ? PHE A 59 ALA A 63 C 3 ILE A 212 ? PHE A 221 ? ILE A 212 PHE A 221 C 4 GLY A 91 ? GLY A 99 ? GLY A 91 GLY A 99 C 5 GLY A 112 ? TRP A 119 ? GLY A 112 TRP A 119 C 6 VAL A 125 ? TYR A 130 ? VAL A 125 TYR A 130 C 7 ILE A 149 ? PHE A 151 ? ILE A 149 PHE A 151 D 1 PHE A 177 ? LYS A 178 ? PHE A 177 LYS A 178 D 2 ILE A 181 ? PRO A 182 ? ILE A 181 PRO A 182 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 5 ? N SER A 5 O MET A 240 ? O MET A 240 A 2 3 O GLN A 231 ? O GLN A 231 N TYR A 44 ? N TYR A 44 A 3 4 O LYS A 41 ? O LYS A 41 N ALA A 30 ? N ALA A 30 B 1 2 N SER A 5 ? N SER A 5 O MET A 240 ? O MET A 240 B 2 3 O LYS A 241 ? O LYS A 241 N THR A 74 ? N THR A 74 B 3 4 N TRP A 77 ? N TRP A 77 O ILE A 168 ? O ILE A 168 B 4 5 N GLY A 171 ? N GLY A 171 O TYR A 189 ? O TYR A 189 B 5 6 N SER A 188 ? N SER A 188 O LEU A 199 ? O LEU A 199 C 1 2 N ASP A 22 ? N ASP A 22 O SER A 62 ? O SER A 62 C 2 3 N PHE A 61 ? N PHE A 61 O TRP A 217 ? O TRP A 217 C 3 4 O ASP A 216 ? O ASP A 216 N GLY A 95 ? N GLY A 95 C 4 5 N ILE A 98 ? N ILE A 98 O ALA A 113 ? O ALA A 113 C 5 6 N ARG A 116 ? N ARG A 116 O TYR A 128 ? O TYR A 128 C 6 7 N ILE A 129 ? N ILE A 129 O ILE A 149 ? O ILE A 149 D 1 2 N LYS A 178 ? N LYS A 178 O ILE A 181 ? O ILE A 181 # _database_PDB_matrix.entry_id 3IM0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 3IM0 _atom_sites.fract_transf_matrix[1][1] 0.024751 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014061 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009930 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 ? ? ? A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 TRP 19 19 19 TRP TRP A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 MET 26 26 26 MET MET A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 TYR 44 44 44 TYR TYR A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 PRO 54 54 54 PRO PRO A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 PHE 61 61 61 PHE PHE A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 PRO 65 65 65 PRO PRO A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 PHE 75 75 75 PHE PHE A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 TRP 77 77 77 TRP TRP A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 PRO 82 82 82 PRO PRO A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 PHE 85 85 85 PHE PHE A . n A 1 86 ASP 86 86 86 ASP ASP A . n A 1 87 PHE 87 87 87 PHE PHE A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 HIS 93 93 93 HIS HIS A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 HIS 100 100 100 HIS HIS A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 TYR 106 106 106 TYR TYR A . n A 1 107 GLN 107 107 107 GLN GLN A . n A 1 108 HIS 108 108 108 HIS HIS A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 THR 111 111 111 THR THR A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 ALA 113 113 113 ALA ALA A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 ASN 115 115 115 ASN ASN A . n A 1 116 ARG 116 116 116 ARG ARG A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 MET 118 118 118 MET MET A . n A 1 119 TRP 119 119 119 TRP TRP A . n A 1 120 GLN 120 120 120 GLN GLN A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 ILE 126 126 126 ILE ILE A . n A 1 127 ASP 127 127 127 ASP ASP A . n A 1 128 TYR 128 128 128 TYR TYR A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 TYR 130 130 130 TYR TYR A . n A 1 131 PRO 131 131 131 PRO PRO A . n A 1 132 PRO 132 132 132 PRO PRO A . n A 1 133 SER 133 133 133 SER SER A . n A 1 134 ASP 134 134 134 ASP ASP A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 LYS 136 136 136 LYS LYS A . n A 1 137 GLN 137 137 137 GLN GLN A . n A 1 138 LYS 138 138 138 LYS LYS A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 PRO 140 140 140 PRO PRO A . n A 1 141 GLY 141 141 141 GLY GLY A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 ASP 143 143 143 ASP ASP A . n A 1 144 PRO 144 144 144 PRO PRO A . n A 1 145 GLU 145 145 145 GLU GLU A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 HIS 147 147 147 HIS HIS A . n A 1 148 GLY 148 148 148 GLY GLY A . n A 1 149 ILE 149 149 149 ILE ILE A . n A 1 150 GLY 150 150 150 GLY GLY A . n A 1 151 PHE 151 151 151 PHE PHE A . n A 1 152 PHE 152 152 152 PHE PHE A . n A 1 153 GLN 153 153 153 GLN GLN A . n A 1 154 ASP 154 154 154 ASP ASP A . n A 1 155 ASP 155 155 155 ASP ASP A . n A 1 156 PHE 156 156 156 PHE PHE A . n A 1 157 LYS 157 157 157 LYS LYS A . n A 1 158 ASN 158 158 158 ASN ASN A . n A 1 159 ALA 159 159 159 ALA ALA A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 LYS 161 161 161 LYS LYS A . n A 1 162 TYR 162 162 162 TYR TYR A . n A 1 163 ASP 163 163 163 ASP ASP A . n A 1 164 VAL 164 164 164 VAL VAL A . n A 1 165 TRP 165 165 165 TRP TRP A . n A 1 166 ASN 166 166 166 ASN ASN A . n A 1 167 ARG 167 167 167 ARG ARG A . n A 1 168 ILE 168 168 168 ILE ILE A . n A 1 169 GLU 169 169 169 GLU GLU A . n A 1 170 ILE 170 170 170 ILE ILE A . n A 1 171 GLY 171 171 171 GLY GLY A . n A 1 172 THR 172 172 172 THR THR A . n A 1 173 LYS 173 173 173 LYS LYS A . n A 1 174 MET 174 174 174 MET MET A . n A 1 175 ASN 175 175 175 ASN ASN A . n A 1 176 THR 176 176 176 THR THR A . n A 1 177 PHE 177 177 177 PHE PHE A . n A 1 178 LYS 178 178 178 LYS LYS A . n A 1 179 ASN 179 179 179 ASN ASN A . n A 1 180 GLY 180 180 180 GLY GLY A . n A 1 181 ILE 181 181 181 ILE ILE A . n A 1 182 PRO 182 182 182 PRO PRO A . n A 1 183 GLN 183 183 183 GLN GLN A . n A 1 184 LEU 184 184 184 LEU LEU A . n A 1 185 ASP 185 185 185 ASP ASP A . n A 1 186 GLY 186 186 186 GLY GLY A . n A 1 187 GLU 187 187 187 GLU GLU A . n A 1 188 SER 188 188 188 SER SER A . n A 1 189 TYR 189 189 189 TYR TYR A . n A 1 190 VAL 190 190 190 VAL VAL A . n A 1 191 ILE 191 191 191 ILE ILE A . n A 1 192 VAL 192 192 192 VAL VAL A . n A 1 193 ASN 193 193 193 ASN ASN A . n A 1 194 GLY 194 194 194 GLY GLY A . n A 1 195 LYS 195 195 195 LYS LYS A . n A 1 196 LYS 196 196 196 LYS LYS A . n A 1 197 GLU 197 197 197 GLU GLU A . n A 1 198 VAL 198 198 198 VAL VAL A . n A 1 199 LEU 199 199 199 LEU LEU A . n A 1 200 LYS 200 200 200 LYS LYS A . n A 1 201 ARG 201 201 201 ARG ARG A . n A 1 202 ILE 202 202 202 ILE ILE A . n A 1 203 ASN 203 203 203 ASN ASN A . n A 1 204 TRP 204 204 204 TRP TRP A . n A 1 205 SER 205 205 205 SER SER A . n A 1 206 ARG 206 206 206 ARG ARG A . n A 1 207 SER 207 207 207 SER SER A . n A 1 208 PRO 208 208 208 PRO PRO A . n A 1 209 ASP 209 209 209 ASP ASP A . n A 1 210 LEU 210 210 210 LEU LEU A . n A 1 211 LEU 211 211 211 LEU LEU A . n A 1 212 ILE 212 212 212 ILE ILE A . n A 1 213 SER 213 213 213 SER SER A . n A 1 214 ARG 214 214 214 ARG ARG A . n A 1 215 PHE 215 215 215 PHE PHE A . n A 1 216 ASP 216 216 216 ASP ASP A . n A 1 217 TRP 217 217 217 TRP TRP A . n A 1 218 ASN 218 218 218 ASN ASN A . n A 1 219 THR 219 219 219 THR THR A . n A 1 220 PHE 220 220 220 PHE PHE A . n A 1 221 PHE 221 221 221 PHE PHE A . n A 1 222 GLY 222 222 222 GLY GLY A . n A 1 223 GLY 223 223 223 GLY GLY A . n A 1 224 PRO 224 224 224 PRO PRO A . n A 1 225 LEU 225 225 225 LEU LEU A . n A 1 226 PRO 226 226 226 PRO PRO A . n A 1 227 SER 227 227 227 SER SER A . n A 1 228 PRO 228 228 228 PRO PRO A . n A 1 229 LYS 229 229 229 LYS LYS A . n A 1 230 ASN 230 230 230 ASN ASN A . n A 1 231 GLN 231 231 231 GLN GLN A . n A 1 232 VAL 232 232 232 VAL VAL A . n A 1 233 ALA 233 233 233 ALA ALA A . n A 1 234 TYR 234 234 234 TYR TYR A . n A 1 235 PHE 235 235 235 PHE PHE A . n A 1 236 THR 236 236 236 THR THR A . n A 1 237 ASN 237 237 237 ASN ASN A . n A 1 238 PHE 238 238 238 PHE PHE A . n A 1 239 GLN 239 239 239 GLN GLN A . n A 1 240 MET 240 240 240 MET MET A . n A 1 241 LYS 241 241 241 LYS LYS A . n A 1 242 LYS 242 242 242 LYS LYS A . n A 1 243 TYR 243 243 243 TYR TYR A . n A 1 244 GLU 244 244 244 GLU GLU A . n A 1 245 LEU 245 245 ? ? ? A . n A 1 246 GLU 246 246 ? ? ? A . n A 1 247 HIS 247 247 ? ? ? A . n A 1 248 HIS 248 248 ? ? ? A . n A 1 249 HIS 249 249 ? ? ? A . n A 1 250 HIS 250 250 ? ? ? A . n A 1 251 HIS 251 251 ? ? ? A . n A 1 252 HIS 252 252 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BDP 1 301 301 BDP BDP A . C 3 HOH 1 401 401 HOH HOH A . C 3 HOH 2 402 402 HOH HOH A . C 3 HOH 3 403 403 HOH HOH A . C 3 HOH 4 404 404 HOH HOH A . C 3 HOH 5 405 405 HOH HOH A . C 3 HOH 6 406 406 HOH HOH A . C 3 HOH 7 407 407 HOH HOH A . C 3 HOH 8 408 408 HOH HOH A . C 3 HOH 9 409 409 HOH HOH A . C 3 HOH 10 410 410 HOH HOH A . C 3 HOH 11 411 411 HOH HOH A . C 3 HOH 12 412 412 HOH HOH A . C 3 HOH 13 413 413 HOH HOH A . C 3 HOH 14 414 414 HOH HOH A . C 3 HOH 15 415 415 HOH HOH A . C 3 HOH 16 416 416 HOH HOH A . C 3 HOH 17 417 417 HOH HOH A . C 3 HOH 18 418 418 HOH HOH A . C 3 HOH 19 419 419 HOH HOH A . C 3 HOH 20 420 420 HOH HOH A . C 3 HOH 21 421 421 HOH HOH A . C 3 HOH 22 422 422 HOH HOH A . C 3 HOH 23 423 423 HOH HOH A . C 3 HOH 24 424 424 HOH HOH A . C 3 HOH 25 425 425 HOH HOH A . C 3 HOH 26 426 426 HOH HOH A . C 3 HOH 27 427 427 HOH HOH A . C 3 HOH 28 428 428 HOH HOH A . C 3 HOH 29 429 429 HOH HOH A . C 3 HOH 30 430 430 HOH HOH A . C 3 HOH 31 431 431 HOH HOH A . C 3 HOH 32 432 432 HOH HOH A . C 3 HOH 33 433 433 HOH HOH A . C 3 HOH 34 434 434 HOH HOH A . C 3 HOH 35 435 435 HOH HOH A . C 3 HOH 36 436 436 HOH HOH A . C 3 HOH 37 437 437 HOH HOH A . C 3 HOH 38 438 438 HOH HOH A . C 3 HOH 39 439 439 HOH HOH A . C 3 HOH 40 440 440 HOH HOH A . C 3 HOH 41 441 441 HOH HOH A . C 3 HOH 42 442 442 HOH HOH A . C 3 HOH 43 443 443 HOH HOH A . C 3 HOH 44 444 444 HOH HOH A . C 3 HOH 45 445 445 HOH HOH A . C 3 HOH 46 446 446 HOH HOH A . C 3 HOH 47 447 447 HOH HOH A . C 3 HOH 48 448 448 HOH HOH A . C 3 HOH 49 449 449 HOH HOH A . C 3 HOH 50 450 450 HOH HOH A . C 3 HOH 51 451 451 HOH HOH A . C 3 HOH 52 452 452 HOH HOH A . C 3 HOH 53 453 453 HOH HOH A . C 3 HOH 54 454 454 HOH HOH A . C 3 HOH 55 455 455 HOH HOH A . C 3 HOH 56 456 456 HOH HOH A . C 3 HOH 57 457 457 HOH HOH A . C 3 HOH 58 458 458 HOH HOH A . C 3 HOH 59 459 459 HOH HOH A . C 3 HOH 60 460 460 HOH HOH A . C 3 HOH 61 461 461 HOH HOH A . C 3 HOH 62 462 462 HOH HOH A . C 3 HOH 63 463 463 HOH HOH A . C 3 HOH 64 464 464 HOH HOH A . C 3 HOH 65 465 465 HOH HOH A . C 3 HOH 66 466 466 HOH HOH A . C 3 HOH 67 467 467 HOH HOH A . C 3 HOH 68 468 468 HOH HOH A . C 3 HOH 69 469 469 HOH HOH A . C 3 HOH 70 470 470 HOH HOH A . C 3 HOH 71 471 471 HOH HOH A . C 3 HOH 72 472 472 HOH HOH A . C 3 HOH 73 473 473 HOH HOH A . C 3 HOH 74 474 474 HOH HOH A . C 3 HOH 75 475 475 HOH HOH A . C 3 HOH 76 476 476 HOH HOH A . C 3 HOH 77 477 477 HOH HOH A . C 3 HOH 78 478 478 HOH HOH A . C 3 HOH 79 479 479 HOH HOH A . C 3 HOH 80 480 480 HOH HOH A . C 3 HOH 81 481 481 HOH HOH A . C 3 HOH 82 482 482 HOH HOH A . C 3 HOH 83 483 483 HOH HOH A . C 3 HOH 84 484 484 HOH HOH A . C 3 HOH 85 485 485 HOH HOH A . C 3 HOH 86 486 486 HOH HOH A . C 3 HOH 87 487 487 HOH HOH A . C 3 HOH 88 488 488 HOH HOH A . C 3 HOH 89 489 489 HOH HOH A . C 3 HOH 90 490 490 HOH HOH A . C 3 HOH 91 491 491 HOH HOH A . C 3 HOH 92 492 492 HOH HOH A . C 3 HOH 93 493 493 HOH HOH A . C 3 HOH 94 494 494 HOH HOH A . C 3 HOH 95 495 495 HOH HOH A . C 3 HOH 96 496 496 HOH HOH A . C 3 HOH 97 497 497 HOH HOH A . C 3 HOH 98 498 498 HOH HOH A . C 3 HOH 99 499 499 HOH HOH A . C 3 HOH 100 500 500 HOH HOH A . C 3 HOH 101 501 501 HOH HOH A . C 3 HOH 102 502 502 HOH HOH A . C 3 HOH 103 503 503 HOH HOH A . C 3 HOH 104 504 504 HOH HOH A . C 3 HOH 105 505 505 HOH HOH A . C 3 HOH 106 506 506 HOH HOH A . C 3 HOH 107 507 507 HOH HOH A . C 3 HOH 108 508 508 HOH HOH A . C 3 HOH 109 509 509 HOH HOH A . C 3 HOH 110 510 510 HOH HOH A . C 3 HOH 111 511 511 HOH HOH A . C 3 HOH 112 512 512 HOH HOH A . C 3 HOH 113 513 513 HOH HOH A . C 3 HOH 114 514 514 HOH HOH A . C 3 HOH 115 515 515 HOH HOH A . C 3 HOH 116 516 516 HOH HOH A . C 3 HOH 117 517 517 HOH HOH A . C 3 HOH 118 518 518 HOH HOH A . C 3 HOH 119 519 519 HOH HOH A . C 3 HOH 120 520 520 HOH HOH A . C 3 HOH 121 521 521 HOH HOH A . C 3 HOH 122 522 522 HOH HOH A . C 3 HOH 123 523 523 HOH HOH A . C 3 HOH 124 524 524 HOH HOH A . C 3 HOH 125 525 525 HOH HOH A . C 3 HOH 126 526 526 HOH HOH A . C 3 HOH 127 527 527 HOH HOH A . C 3 HOH 128 528 528 HOH HOH A . C 3 HOH 129 529 529 HOH HOH A . C 3 HOH 130 530 530 HOH HOH A . C 3 HOH 131 531 531 HOH HOH A . C 3 HOH 132 532 532 HOH HOH A . C 3 HOH 133 533 533 HOH HOH A . C 3 HOH 134 534 534 HOH HOH A . C 3 HOH 135 535 535 HOH HOH A . C 3 HOH 136 536 536 HOH HOH A . C 3 HOH 137 537 537 HOH HOH A . C 3 HOH 138 538 538 HOH HOH A . C 3 HOH 139 539 539 HOH HOH A . C 3 HOH 140 540 540 HOH HOH A . C 3 HOH 141 541 541 HOH HOH A . C 3 HOH 142 542 542 HOH HOH A . C 3 HOH 143 543 543 HOH HOH A . C 3 HOH 144 544 544 HOH HOH A . C 3 HOH 145 545 545 HOH HOH A . C 3 HOH 146 546 546 HOH HOH A . C 3 HOH 147 547 547 HOH HOH A . C 3 HOH 148 548 548 HOH HOH A . C 3 HOH 149 549 549 HOH HOH A . C 3 HOH 150 550 550 HOH HOH A . C 3 HOH 151 551 551 HOH HOH A . C 3 HOH 152 552 552 HOH HOH A . C 3 HOH 153 553 553 HOH HOH A . C 3 HOH 154 554 554 HOH HOH A . C 3 HOH 155 555 555 HOH HOH A . C 3 HOH 156 556 556 HOH HOH A . C 3 HOH 157 557 557 HOH HOH A . C 3 HOH 158 558 558 HOH HOH A . C 3 HOH 159 559 559 HOH HOH A . C 3 HOH 160 560 560 HOH HOH A . C 3 HOH 161 561 561 HOH HOH A . C 3 HOH 162 562 562 HOH HOH A . C 3 HOH 163 563 563 HOH HOH A . C 3 HOH 164 564 564 HOH HOH A . C 3 HOH 165 565 565 HOH HOH A . C 3 HOH 166 566 566 HOH HOH A . C 3 HOH 167 567 567 HOH HOH A . C 3 HOH 168 568 568 HOH HOH A . C 3 HOH 169 569 569 HOH HOH A . C 3 HOH 170 570 570 HOH HOH A . C 3 HOH 171 571 571 HOH HOH A . C 3 HOH 172 572 572 HOH HOH A . C 3 HOH 173 573 573 HOH HOH A . C 3 HOH 174 574 574 HOH HOH A . C 3 HOH 175 575 575 HOH HOH A . C 3 HOH 176 576 576 HOH HOH A . C 3 HOH 177 577 577 HOH HOH A . C 3 HOH 178 578 578 HOH HOH A . C 3 HOH 179 579 579 HOH HOH A . C 3 HOH 180 580 580 HOH HOH A . C 3 HOH 181 581 581 HOH HOH A . C 3 HOH 182 582 582 HOH HOH A . C 3 HOH 183 583 583 HOH HOH A . C 3 HOH 184 584 584 HOH HOH A . C 3 HOH 185 585 585 HOH HOH A . C 3 HOH 186 586 586 HOH HOH A . C 3 HOH 187 587 587 HOH HOH A . C 3 HOH 188 588 588 HOH HOH A . C 3 HOH 189 589 589 HOH HOH A . C 3 HOH 190 590 590 HOH HOH A . C 3 HOH 191 591 591 HOH HOH A . C 3 HOH 192 592 592 HOH HOH A . C 3 HOH 193 593 593 HOH HOH A . C 3 HOH 194 594 594 HOH HOH A . C 3 HOH 195 595 595 HOH HOH A . C 3 HOH 196 596 596 HOH HOH A . C 3 HOH 197 597 597 HOH HOH A . C 3 HOH 198 598 598 HOH HOH A . C 3 HOH 199 599 599 HOH HOH A . C 3 HOH 200 600 600 HOH HOH A . C 3 HOH 201 601 601 HOH HOH A . C 3 HOH 202 602 602 HOH HOH A . C 3 HOH 203 603 603 HOH HOH A . C 3 HOH 204 604 604 HOH HOH A . C 3 HOH 205 605 605 HOH HOH A . C 3 HOH 206 606 606 HOH HOH A . C 3 HOH 207 607 607 HOH HOH A . C 3 HOH 208 608 608 HOH HOH A . C 3 HOH 209 609 609 HOH HOH A . C 3 HOH 210 610 610 HOH HOH A . C 3 HOH 211 611 611 HOH HOH A . C 3 HOH 212 612 612 HOH HOH A . C 3 HOH 213 613 613 HOH HOH A . C 3 HOH 214 614 614 HOH HOH A . C 3 HOH 215 615 615 HOH HOH A . C 3 HOH 216 616 616 HOH HOH A . C 3 HOH 217 617 617 HOH HOH A . C 3 HOH 218 618 618 HOH HOH A . C 3 HOH 219 619 619 HOH HOH A . C 3 HOH 220 620 620 HOH HOH A . C 3 HOH 221 621 621 HOH HOH A . C 3 HOH 222 622 622 HOH HOH A . C 3 HOH 223 623 623 HOH HOH A . C 3 HOH 224 624 624 HOH HOH A . C 3 HOH 225 625 625 HOH HOH A . C 3 HOH 226 626 626 HOH HOH A . C 3 HOH 227 627 627 HOH HOH A . C 3 HOH 228 628 628 HOH HOH A . C 3 HOH 229 629 629 HOH HOH A . C 3 HOH 230 630 630 HOH HOH A . C 3 HOH 231 631 631 HOH HOH A . C 3 HOH 232 632 632 HOH HOH A . C 3 HOH 233 633 633 HOH HOH A . C 3 HOH 234 634 634 HOH HOH A . C 3 HOH 235 635 635 HOH HOH A . C 3 HOH 236 636 636 HOH HOH A . C 3 HOH 237 637 637 HOH HOH A . C 3 HOH 238 638 638 HOH HOH A . C 3 HOH 239 639 639 HOH HOH A . C 3 HOH 240 640 640 HOH HOH A . C 3 HOH 241 641 641 HOH HOH A . C 3 HOH 242 642 642 HOH HOH A . C 3 HOH 243 643 643 HOH HOH A . C 3 HOH 244 644 644 HOH HOH A . C 3 HOH 245 645 645 HOH HOH A . C 3 HOH 246 646 646 HOH HOH A . C 3 HOH 247 647 647 HOH HOH A . C 3 HOH 248 648 648 HOH HOH A . C 3 HOH 249 649 649 HOH HOH A . C 3 HOH 250 650 650 HOH HOH A . C 3 HOH 251 651 651 HOH HOH A . C 3 HOH 252 652 652 HOH HOH A . C 3 HOH 253 653 653 HOH HOH A . C 3 HOH 254 654 654 HOH HOH A . C 3 HOH 255 655 655 HOH HOH A . C 3 HOH 256 656 656 HOH HOH A . C 3 HOH 257 657 657 HOH HOH A . C 3 HOH 258 658 658 HOH HOH A . C 3 HOH 259 659 659 HOH HOH A . C 3 HOH 260 660 660 HOH HOH A . C 3 HOH 261 661 661 HOH HOH A . C 3 HOH 262 662 662 HOH HOH A . C 3 HOH 263 663 663 HOH HOH A . C 3 HOH 264 664 664 HOH HOH A . C 3 HOH 265 665 665 HOH HOH A . C 3 HOH 266 666 666 HOH HOH A . C 3 HOH 267 667 667 HOH HOH A . C 3 HOH 268 668 668 HOH HOH A . C 3 HOH 269 669 669 HOH HOH A . C 3 HOH 270 670 670 HOH HOH A . C 3 HOH 271 671 671 HOH HOH A . C 3 HOH 272 672 672 HOH HOH A . C 3 HOH 273 673 673 HOH HOH A . C 3 HOH 274 674 674 HOH HOH A . C 3 HOH 275 675 675 HOH HOH A . C 3 HOH 276 676 676 HOH HOH A . C 3 HOH 277 677 677 HOH HOH A . C 3 HOH 278 678 678 HOH HOH A . C 3 HOH 279 679 679 HOH HOH A . C 3 HOH 280 680 680 HOH HOH A . C 3 HOH 281 681 681 HOH HOH A . C 3 HOH 282 682 682 HOH HOH A . C 3 HOH 283 683 683 HOH HOH A . C 3 HOH 284 684 684 HOH HOH A . C 3 HOH 285 685 685 HOH HOH A . C 3 HOH 286 686 686 HOH HOH A . C 3 HOH 287 687 687 HOH HOH A . C 3 HOH 288 688 688 HOH HOH A . C 3 HOH 289 689 689 HOH HOH A . C 3 HOH 290 690 690 HOH HOH A . C 3 HOH 291 691 691 HOH HOH A . C 3 HOH 292 692 692 HOH HOH A . C 3 HOH 293 693 693 HOH HOH A . C 3 HOH 294 694 694 HOH HOH A . C 3 HOH 295 695 695 HOH HOH A . C 3 HOH 296 696 696 HOH HOH A . C 3 HOH 297 697 697 HOH HOH A . C 3 HOH 298 698 698 HOH HOH A . C 3 HOH 299 699 699 HOH HOH A . C 3 HOH 300 700 700 HOH HOH A . C 3 HOH 301 701 701 HOH HOH A . C 3 HOH 302 702 702 HOH HOH A . C 3 HOH 303 703 703 HOH HOH A . C 3 HOH 304 704 704 HOH HOH A . C 3 HOH 305 705 705 HOH HOH A . C 3 HOH 306 706 706 HOH HOH A . C 3 HOH 307 707 707 HOH HOH A . C 3 HOH 308 708 708 HOH HOH A . C 3 HOH 309 709 709 HOH HOH A . C 3 HOH 310 710 710 HOH HOH A . C 3 HOH 311 711 711 HOH HOH A . C 3 HOH 312 712 712 HOH HOH A . C 3 HOH 313 713 713 HOH HOH A . C 3 HOH 314 714 714 HOH HOH A . C 3 HOH 315 715 715 HOH HOH A . C 3 HOH 316 716 716 HOH HOH A . C 3 HOH 317 717 717 HOH HOH A . C 3 HOH 318 718 718 HOH HOH A . C 3 HOH 319 719 719 HOH HOH A . C 3 HOH 320 720 720 HOH HOH A . C 3 HOH 321 721 721 HOH HOH A . C 3 HOH 322 722 722 HOH HOH A . C 3 HOH 323 723 723 HOH HOH A . C 3 HOH 324 724 724 HOH HOH A . C 3 HOH 325 725 725 HOH HOH A . C 3 HOH 326 726 726 HOH HOH A . C 3 HOH 327 727 727 HOH HOH A . C 3 HOH 328 728 728 HOH HOH A . C 3 HOH 329 729 729 HOH HOH A . C 3 HOH 330 730 730 HOH HOH A . C 3 HOH 331 731 731 HOH HOH A . C 3 HOH 332 732 732 HOH HOH A . C 3 HOH 333 733 733 HOH HOH A . C 3 HOH 334 734 734 HOH HOH A . C 3 HOH 335 735 735 HOH HOH A . C 3 HOH 336 736 736 HOH HOH A . C 3 HOH 337 737 737 HOH HOH A . C 3 HOH 338 738 738 HOH HOH A . C 3 HOH 339 739 739 HOH HOH A . C 3 HOH 340 740 740 HOH HOH A . C 3 HOH 341 741 741 HOH HOH A . C 3 HOH 342 742 742 HOH HOH A . C 3 HOH 343 743 743 HOH HOH A . C 3 HOH 344 744 744 HOH HOH A . C 3 HOH 345 745 745 HOH HOH A . C 3 HOH 346 746 746 HOH HOH A . C 3 HOH 347 747 747 HOH HOH A . C 3 HOH 348 748 748 HOH HOH A . C 3 HOH 349 749 749 HOH HOH A . C 3 HOH 350 750 750 HOH HOH A . C 3 HOH 351 751 751 HOH HOH A . C 3 HOH 352 752 752 HOH HOH A . C 3 HOH 353 753 753 HOH HOH A . C 3 HOH 354 754 754 HOH HOH A . C 3 HOH 355 755 755 HOH HOH A . C 3 HOH 356 756 756 HOH HOH A . C 3 HOH 357 757 757 HOH HOH A . C 3 HOH 358 758 758 HOH HOH A . C 3 HOH 359 759 759 HOH HOH A . C 3 HOH 360 760 760 HOH HOH A . C 3 HOH 361 761 761 HOH HOH A . C 3 HOH 362 762 762 HOH HOH A . C 3 HOH 363 763 763 HOH HOH A . C 3 HOH 364 764 764 HOH HOH A . C 3 HOH 365 765 765 HOH HOH A . C 3 HOH 366 766 766 HOH HOH A . C 3 HOH 367 767 767 HOH HOH A . C 3 HOH 368 768 768 HOH HOH A . C 3 HOH 369 769 769 HOH HOH A . C 3 HOH 370 770 770 HOH HOH A . C 3 HOH 371 771 771 HOH HOH A . C 3 HOH 372 772 772 HOH HOH A . C 3 HOH 373 773 773 HOH HOH A . C 3 HOH 374 774 774 HOH HOH A . C 3 HOH 375 775 775 HOH HOH A . C 3 HOH 376 776 776 HOH HOH A . C 3 HOH 377 777 777 HOH HOH A . C 3 HOH 378 778 778 HOH HOH A . C 3 HOH 379 779 779 HOH HOH A . C 3 HOH 380 780 780 HOH HOH A . C 3 HOH 381 781 781 HOH HOH A . C 3 HOH 382 782 782 HOH HOH A . C 3 HOH 383 783 783 HOH HOH A . C 3 HOH 384 784 784 HOH HOH A . C 3 HOH 385 785 785 HOH HOH A . C 3 HOH 386 786 786 HOH HOH A . C 3 HOH 387 787 787 HOH HOH A . C 3 HOH 388 788 788 HOH HOH A . C 3 HOH 389 789 789 HOH HOH A . C 3 HOH 390 790 790 HOH HOH A . C 3 HOH 391 791 791 HOH HOH A . C 3 HOH 392 792 792 HOH HOH A . C 3 HOH 393 793 793 HOH HOH A . C 3 HOH 394 794 794 HOH HOH A . C 3 HOH 395 795 795 HOH HOH A . C 3 HOH 396 796 796 HOH HOH A . C 3 HOH 397 797 797 HOH HOH A . C 3 HOH 398 798 798 HOH HOH A . C 3 HOH 399 799 799 HOH HOH A . C 3 HOH 400 800 800 HOH HOH A . C 3 HOH 401 801 801 HOH HOH A . C 3 HOH 402 802 802 HOH HOH A . C 3 HOH 403 803 803 HOH HOH A . C 3 HOH 404 804 804 HOH HOH A . C 3 HOH 405 805 805 HOH HOH A . C 3 HOH 406 806 806 HOH HOH A . C 3 HOH 407 807 807 HOH HOH A . C 3 HOH 408 808 808 HOH HOH A . C 3 HOH 409 809 809 HOH HOH A . C 3 HOH 410 810 810 HOH HOH A . C 3 HOH 411 811 811 HOH HOH A . C 3 HOH 412 812 812 HOH HOH A . C 3 HOH 413 813 813 HOH HOH A . C 3 HOH 414 814 814 HOH HOH A . C 3 HOH 415 815 815 HOH HOH A . C 3 HOH 416 816 816 HOH HOH A . C 3 HOH 417 817 817 HOH HOH A . C 3 HOH 418 818 818 HOH HOH A . C 3 HOH 419 819 819 HOH HOH A . C 3 HOH 420 820 820 HOH HOH A . C 3 HOH 421 821 821 HOH HOH A . C 3 HOH 422 822 822 HOH HOH A . C 3 HOH 423 823 823 HOH HOH A . C 3 HOH 424 824 824 HOH HOH A . C 3 HOH 425 825 825 HOH HOH A . C 3 HOH 426 826 826 HOH HOH A . C 3 HOH 427 827 827 HOH HOH A . C 3 HOH 428 828 828 HOH HOH A . C 3 HOH 429 829 829 HOH HOH A . C 3 HOH 430 830 830 HOH HOH A . C 3 HOH 431 831 831 HOH HOH A . C 3 HOH 432 832 832 HOH HOH A . C 3 HOH 433 833 833 HOH HOH A . C 3 HOH 434 834 834 HOH HOH A . C 3 HOH 435 835 835 HOH HOH A . C 3 HOH 436 836 836 HOH HOH A . C 3 HOH 437 837 837 HOH HOH A . C 3 HOH 438 838 838 HOH HOH A . C 3 HOH 439 839 839 HOH HOH A . C 3 HOH 440 840 840 HOH HOH A . C 3 HOH 441 841 841 HOH HOH A . C 3 HOH 442 842 842 HOH HOH A . C 3 HOH 443 843 843 HOH HOH A . C 3 HOH 444 844 844 HOH HOH A . C 3 HOH 445 845 845 HOH HOH A . C 3 HOH 446 846 846 HOH HOH A . C 3 HOH 447 847 847 HOH HOH A . C 3 HOH 448 848 848 HOH HOH A . C 3 HOH 449 849 849 HOH HOH A . C 3 HOH 450 850 850 HOH HOH A . C 3 HOH 451 851 851 HOH HOH A . C 3 HOH 452 852 852 HOH HOH A . C 3 HOH 453 853 853 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-10-20 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2020-07-29 4 'Structure model' 1 3 2023-11-01 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Structure summary' 7 4 'Structure model' 'Data collection' 8 4 'Structure model' 'Database references' 9 4 'Structure model' 'Refinement description' 10 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' entity 3 3 'Structure model' pdbx_chem_comp_identifier 4 3 'Structure model' pdbx_entity_nonpoly 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site 7 3 'Structure model' struct_site_gen 8 4 'Structure model' chem_comp 9 4 'Structure model' chem_comp_atom 10 4 'Structure model' chem_comp_bond 11 4 'Structure model' database_2 12 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.name' 2 3 'Structure model' '_chem_comp.type' 3 3 'Structure model' '_entity.pdbx_description' 4 3 'Structure model' '_pdbx_entity_nonpoly.name' 5 3 'Structure model' '_struct_ref_seq_dif.details' 6 4 'Structure model' '_chem_comp.pdbx_synonyms' 7 4 'Structure model' '_database_2.pdbx_DOI' 8 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 CNS refinement . ? 2 SHELXL-97 refinement . ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 CNS phasing . ? 6 # _pdbx_entry_details.entry_id 3IM0 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details 'SINCE O1 OF BDP IS MISSING IN THIS ENTRY, ALTERNATIVELY IT MAY BE GCU(ALPHA-D-GLUCOPYRANURONIC ACID).' _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 116 ? ? CZ A ARG 116 ? ? NH2 A ARG 116 ? ? 116.01 120.30 -4.29 0.50 N 2 1 CA A TYR 189 ? ? CB A TYR 189 ? ? CG A TYR 189 ? ? 125.33 113.40 11.93 1.90 N 3 1 CB A TYR 243 ? ? CG A TYR 243 ? ? CD1 A TYR 243 ? ? 117.40 121.00 -3.60 0.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 27 ? ? 53.73 -128.49 2 1 ALA A 88 ? ? 54.51 -129.40 3 1 HIS A 93 ? ? -104.82 -77.91 4 1 ALA A 103 ? ? -166.76 43.15 5 1 ASN A 158 ? A 39.02 45.02 6 1 ARG A 201 ? ? 91.82 29.34 7 1 ASN A 218 ? ? -161.52 96.38 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag N _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id BDP _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 301 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id O1 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id B _pdbx_unobs_or_zero_occ_atoms.label_comp_id BDP _pdbx_unobs_or_zero_occ_atoms.label_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.label_atom_id O1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A THR 1 ? A THR 1 2 1 Y 1 A LEU 245 ? A LEU 245 3 1 Y 1 A GLU 246 ? A GLU 246 4 1 Y 1 A HIS 247 ? A HIS 247 5 1 Y 1 A HIS 248 ? A HIS 248 6 1 Y 1 A HIS 249 ? A HIS 249 7 1 Y 1 A HIS 250 ? A HIS 250 8 1 Y 1 A HIS 251 ? A HIS 251 9 1 Y 1 A HIS 252 ? A HIS 252 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BDP C1 C N R 74 BDP C2 C N R 75 BDP C3 C N S 76 BDP C4 C N S 77 BDP C5 C N S 78 BDP C6 C N N 79 BDP O2 O N N 80 BDP O3 O N N 81 BDP O4 O N N 82 BDP O5 O N N 83 BDP O6A O N N 84 BDP O1 O N N 85 BDP O6B O N N 86 BDP H1 H N N 87 BDP H2 H N N 88 BDP H3 H N N 89 BDP H4 H N N 90 BDP H5 H N N 91 BDP HO2 H N N 92 BDP HO3 H N N 93 BDP HO4 H N N 94 BDP HO1 H N N 95 BDP HO6B H N N 96 GLN N N N N 97 GLN CA C N S 98 GLN C C N N 99 GLN O O N N 100 GLN CB C N N 101 GLN CG C N N 102 GLN CD C N N 103 GLN OE1 O N N 104 GLN NE2 N N N 105 GLN OXT O N N 106 GLN H H N N 107 GLN H2 H N N 108 GLN HA H N N 109 GLN HB2 H N N 110 GLN HB3 H N N 111 GLN HG2 H N N 112 GLN HG3 H N N 113 GLN HE21 H N N 114 GLN HE22 H N N 115 GLN HXT H N N 116 GLU N N N N 117 GLU CA C N S 118 GLU C C N N 119 GLU O O N N 120 GLU CB C N N 121 GLU CG C N N 122 GLU CD C N N 123 GLU OE1 O N N 124 GLU OE2 O N N 125 GLU OXT O N N 126 GLU H H N N 127 GLU H2 H N N 128 GLU HA H N N 129 GLU HB2 H N N 130 GLU HB3 H N N 131 GLU HG2 H N N 132 GLU HG3 H N N 133 GLU HE2 H N N 134 GLU HXT H N N 135 GLY N N N N 136 GLY CA C N N 137 GLY C C N N 138 GLY O O N N 139 GLY OXT O N N 140 GLY H H N N 141 GLY H2 H N N 142 GLY HA2 H N N 143 GLY HA3 H N N 144 GLY HXT H N N 145 HIS N N N N 146 HIS CA C N S 147 HIS C C N N 148 HIS O O N N 149 HIS CB C N N 150 HIS CG C Y N 151 HIS ND1 N Y N 152 HIS CD2 C Y N 153 HIS CE1 C Y N 154 HIS NE2 N Y N 155 HIS OXT O N N 156 HIS H H N N 157 HIS H2 H N N 158 HIS HA H N N 159 HIS HB2 H N N 160 HIS HB3 H N N 161 HIS HD1 H N N 162 HIS HD2 H N N 163 HIS HE1 H N N 164 HIS HE2 H N N 165 HIS HXT H N N 166 HOH O O N N 167 HOH H1 H N N 168 HOH H2 H N N 169 ILE N N N N 170 ILE CA C N S 171 ILE C C N N 172 ILE O O N N 173 ILE CB C N S 174 ILE CG1 C N N 175 ILE CG2 C N N 176 ILE CD1 C N N 177 ILE OXT O N N 178 ILE H H N N 179 ILE H2 H N N 180 ILE HA H N N 181 ILE HB H N N 182 ILE HG12 H N N 183 ILE HG13 H N N 184 ILE HG21 H N N 185 ILE HG22 H N N 186 ILE HG23 H N N 187 ILE HD11 H N N 188 ILE HD12 H N N 189 ILE HD13 H N N 190 ILE HXT H N N 191 LEU N N N N 192 LEU CA C N S 193 LEU C C N N 194 LEU O O N N 195 LEU CB C N N 196 LEU CG C N N 197 LEU CD1 C N N 198 LEU CD2 C N N 199 LEU OXT O N N 200 LEU H H N N 201 LEU H2 H N N 202 LEU HA H N N 203 LEU HB2 H N N 204 LEU HB3 H N N 205 LEU HG H N N 206 LEU HD11 H N N 207 LEU HD12 H N N 208 LEU HD13 H N N 209 LEU HD21 H N N 210 LEU HD22 H N N 211 LEU HD23 H N N 212 LEU HXT H N N 213 LYS N N N N 214 LYS CA C N S 215 LYS C C N N 216 LYS O O N N 217 LYS CB C N N 218 LYS CG C N N 219 LYS CD C N N 220 LYS CE C N N 221 LYS NZ N N N 222 LYS OXT O N N 223 LYS H H N N 224 LYS H2 H N N 225 LYS HA H N N 226 LYS HB2 H N N 227 LYS HB3 H N N 228 LYS HG2 H N N 229 LYS HG3 H N N 230 LYS HD2 H N N 231 LYS HD3 H N N 232 LYS HE2 H N N 233 LYS HE3 H N N 234 LYS HZ1 H N N 235 LYS HZ2 H N N 236 LYS HZ3 H N N 237 LYS HXT H N N 238 MET N N N N 239 MET CA C N S 240 MET C C N N 241 MET O O N N 242 MET CB C N N 243 MET CG C N N 244 MET SD S N N 245 MET CE C N N 246 MET OXT O N N 247 MET H H N N 248 MET H2 H N N 249 MET HA H N N 250 MET HB2 H N N 251 MET HB3 H N N 252 MET HG2 H N N 253 MET HG3 H N N 254 MET HE1 H N N 255 MET HE2 H N N 256 MET HE3 H N N 257 MET HXT H N N 258 PHE N N N N 259 PHE CA C N S 260 PHE C C N N 261 PHE O O N N 262 PHE CB C N N 263 PHE CG C Y N 264 PHE CD1 C Y N 265 PHE CD2 C Y N 266 PHE CE1 C Y N 267 PHE CE2 C Y N 268 PHE CZ C Y N 269 PHE OXT O N N 270 PHE H H N N 271 PHE H2 H N N 272 PHE HA H N N 273 PHE HB2 H N N 274 PHE HB3 H N N 275 PHE HD1 H N N 276 PHE HD2 H N N 277 PHE HE1 H N N 278 PHE HE2 H N N 279 PHE HZ H N N 280 PHE HXT H N N 281 PRO N N N N 282 PRO CA C N S 283 PRO C C N N 284 PRO O O N N 285 PRO CB C N N 286 PRO CG C N N 287 PRO CD C N N 288 PRO OXT O N N 289 PRO H H N N 290 PRO HA H N N 291 PRO HB2 H N N 292 PRO HB3 H N N 293 PRO HG2 H N N 294 PRO HG3 H N N 295 PRO HD2 H N N 296 PRO HD3 H N N 297 PRO HXT H N N 298 SER N N N N 299 SER CA C N S 300 SER C C N N 301 SER O O N N 302 SER CB C N N 303 SER OG O N N 304 SER OXT O N N 305 SER H H N N 306 SER H2 H N N 307 SER HA H N N 308 SER HB2 H N N 309 SER HB3 H N N 310 SER HG H N N 311 SER HXT H N N 312 THR N N N N 313 THR CA C N S 314 THR C C N N 315 THR O O N N 316 THR CB C N R 317 THR OG1 O N N 318 THR CG2 C N N 319 THR OXT O N N 320 THR H H N N 321 THR H2 H N N 322 THR HA H N N 323 THR HB H N N 324 THR HG1 H N N 325 THR HG21 H N N 326 THR HG22 H N N 327 THR HG23 H N N 328 THR HXT H N N 329 TRP N N N N 330 TRP CA C N S 331 TRP C C N N 332 TRP O O N N 333 TRP CB C N N 334 TRP CG C Y N 335 TRP CD1 C Y N 336 TRP CD2 C Y N 337 TRP NE1 N Y N 338 TRP CE2 C Y N 339 TRP CE3 C Y N 340 TRP CZ2 C Y N 341 TRP CZ3 C Y N 342 TRP CH2 C Y N 343 TRP OXT O N N 344 TRP H H N N 345 TRP H2 H N N 346 TRP HA H N N 347 TRP HB2 H N N 348 TRP HB3 H N N 349 TRP HD1 H N N 350 TRP HE1 H N N 351 TRP HE3 H N N 352 TRP HZ2 H N N 353 TRP HZ3 H N N 354 TRP HH2 H N N 355 TRP HXT H N N 356 TYR N N N N 357 TYR CA C N S 358 TYR C C N N 359 TYR O O N N 360 TYR CB C N N 361 TYR CG C Y N 362 TYR CD1 C Y N 363 TYR CD2 C Y N 364 TYR CE1 C Y N 365 TYR CE2 C Y N 366 TYR CZ C Y N 367 TYR OH O N N 368 TYR OXT O N N 369 TYR H H N N 370 TYR H2 H N N 371 TYR HA H N N 372 TYR HB2 H N N 373 TYR HB3 H N N 374 TYR HD1 H N N 375 TYR HD2 H N N 376 TYR HE1 H N N 377 TYR HE2 H N N 378 TYR HH H N N 379 TYR HXT H N N 380 VAL N N N N 381 VAL CA C N S 382 VAL C C N N 383 VAL O O N N 384 VAL CB C N N 385 VAL CG1 C N N 386 VAL CG2 C N N 387 VAL OXT O N N 388 VAL H H N N 389 VAL H2 H N N 390 VAL HA H N N 391 VAL HB H N N 392 VAL HG11 H N N 393 VAL HG12 H N N 394 VAL HG13 H N N 395 VAL HG21 H N N 396 VAL HG22 H N N 397 VAL HG23 H N N 398 VAL HXT H N N 399 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BDP C1 C2 sing N N 70 BDP C1 O5 sing N N 71 BDP C1 O1 sing N N 72 BDP C1 H1 sing N N 73 BDP C2 C3 sing N N 74 BDP C2 O2 sing N N 75 BDP C2 H2 sing N N 76 BDP C3 C4 sing N N 77 BDP C3 O3 sing N N 78 BDP C3 H3 sing N N 79 BDP C4 C5 sing N N 80 BDP C4 O4 sing N N 81 BDP C4 H4 sing N N 82 BDP C5 C6 sing N N 83 BDP C5 O5 sing N N 84 BDP C5 H5 sing N N 85 BDP C6 O6A doub N N 86 BDP C6 O6B sing N N 87 BDP O2 HO2 sing N N 88 BDP O3 HO3 sing N N 89 BDP O4 HO4 sing N N 90 BDP O1 HO1 sing N N 91 BDP O6B HO6B sing N N 92 GLN N CA sing N N 93 GLN N H sing N N 94 GLN N H2 sing N N 95 GLN CA C sing N N 96 GLN CA CB sing N N 97 GLN CA HA sing N N 98 GLN C O doub N N 99 GLN C OXT sing N N 100 GLN CB CG sing N N 101 GLN CB HB2 sing N N 102 GLN CB HB3 sing N N 103 GLN CG CD sing N N 104 GLN CG HG2 sing N N 105 GLN CG HG3 sing N N 106 GLN CD OE1 doub N N 107 GLN CD NE2 sing N N 108 GLN NE2 HE21 sing N N 109 GLN NE2 HE22 sing N N 110 GLN OXT HXT sing N N 111 GLU N CA sing N N 112 GLU N H sing N N 113 GLU N H2 sing N N 114 GLU CA C sing N N 115 GLU CA CB sing N N 116 GLU CA HA sing N N 117 GLU C O doub N N 118 GLU C OXT sing N N 119 GLU CB CG sing N N 120 GLU CB HB2 sing N N 121 GLU CB HB3 sing N N 122 GLU CG CD sing N N 123 GLU CG HG2 sing N N 124 GLU CG HG3 sing N N 125 GLU CD OE1 doub N N 126 GLU CD OE2 sing N N 127 GLU OE2 HE2 sing N N 128 GLU OXT HXT sing N N 129 GLY N CA sing N N 130 GLY N H sing N N 131 GLY N H2 sing N N 132 GLY CA C sing N N 133 GLY CA HA2 sing N N 134 GLY CA HA3 sing N N 135 GLY C O doub N N 136 GLY C OXT sing N N 137 GLY OXT HXT sing N N 138 HIS N CA sing N N 139 HIS N H sing N N 140 HIS N H2 sing N N 141 HIS CA C sing N N 142 HIS CA CB sing N N 143 HIS CA HA sing N N 144 HIS C O doub N N 145 HIS C OXT sing N N 146 HIS CB CG sing N N 147 HIS CB HB2 sing N N 148 HIS CB HB3 sing N N 149 HIS CG ND1 sing Y N 150 HIS CG CD2 doub Y N 151 HIS ND1 CE1 doub Y N 152 HIS ND1 HD1 sing N N 153 HIS CD2 NE2 sing Y N 154 HIS CD2 HD2 sing N N 155 HIS CE1 NE2 sing Y N 156 HIS CE1 HE1 sing N N 157 HIS NE2 HE2 sing N N 158 HIS OXT HXT sing N N 159 HOH O H1 sing N N 160 HOH O H2 sing N N 161 ILE N CA sing N N 162 ILE N H sing N N 163 ILE N H2 sing N N 164 ILE CA C sing N N 165 ILE CA CB sing N N 166 ILE CA HA sing N N 167 ILE C O doub N N 168 ILE C OXT sing N N 169 ILE CB CG1 sing N N 170 ILE CB CG2 sing N N 171 ILE CB HB sing N N 172 ILE CG1 CD1 sing N N 173 ILE CG1 HG12 sing N N 174 ILE CG1 HG13 sing N N 175 ILE CG2 HG21 sing N N 176 ILE CG2 HG22 sing N N 177 ILE CG2 HG23 sing N N 178 ILE CD1 HD11 sing N N 179 ILE CD1 HD12 sing N N 180 ILE CD1 HD13 sing N N 181 ILE OXT HXT sing N N 182 LEU N CA sing N N 183 LEU N H sing N N 184 LEU N H2 sing N N 185 LEU CA C sing N N 186 LEU CA CB sing N N 187 LEU CA HA sing N N 188 LEU C O doub N N 189 LEU C OXT sing N N 190 LEU CB CG sing N N 191 LEU CB HB2 sing N N 192 LEU CB HB3 sing N N 193 LEU CG CD1 sing N N 194 LEU CG CD2 sing N N 195 LEU CG HG sing N N 196 LEU CD1 HD11 sing N N 197 LEU CD1 HD12 sing N N 198 LEU CD1 HD13 sing N N 199 LEU CD2 HD21 sing N N 200 LEU CD2 HD22 sing N N 201 LEU CD2 HD23 sing N N 202 LEU OXT HXT sing N N 203 LYS N CA sing N N 204 LYS N H sing N N 205 LYS N H2 sing N N 206 LYS CA C sing N N 207 LYS CA CB sing N N 208 LYS CA HA sing N N 209 LYS C O doub N N 210 LYS C OXT sing N N 211 LYS CB CG sing N N 212 LYS CB HB2 sing N N 213 LYS CB HB3 sing N N 214 LYS CG CD sing N N 215 LYS CG HG2 sing N N 216 LYS CG HG3 sing N N 217 LYS CD CE sing N N 218 LYS CD HD2 sing N N 219 LYS CD HD3 sing N N 220 LYS CE NZ sing N N 221 LYS CE HE2 sing N N 222 LYS CE HE3 sing N N 223 LYS NZ HZ1 sing N N 224 LYS NZ HZ2 sing N N 225 LYS NZ HZ3 sing N N 226 LYS OXT HXT sing N N 227 MET N CA sing N N 228 MET N H sing N N 229 MET N H2 sing N N 230 MET CA C sing N N 231 MET CA CB sing N N 232 MET CA HA sing N N 233 MET C O doub N N 234 MET C OXT sing N N 235 MET CB CG sing N N 236 MET CB HB2 sing N N 237 MET CB HB3 sing N N 238 MET CG SD sing N N 239 MET CG HG2 sing N N 240 MET CG HG3 sing N N 241 MET SD CE sing N N 242 MET CE HE1 sing N N 243 MET CE HE2 sing N N 244 MET CE HE3 sing N N 245 MET OXT HXT sing N N 246 PHE N CA sing N N 247 PHE N H sing N N 248 PHE N H2 sing N N 249 PHE CA C sing N N 250 PHE CA CB sing N N 251 PHE CA HA sing N N 252 PHE C O doub N N 253 PHE C OXT sing N N 254 PHE CB CG sing N N 255 PHE CB HB2 sing N N 256 PHE CB HB3 sing N N 257 PHE CG CD1 doub Y N 258 PHE CG CD2 sing Y N 259 PHE CD1 CE1 sing Y N 260 PHE CD1 HD1 sing N N 261 PHE CD2 CE2 doub Y N 262 PHE CD2 HD2 sing N N 263 PHE CE1 CZ doub Y N 264 PHE CE1 HE1 sing N N 265 PHE CE2 CZ sing Y N 266 PHE CE2 HE2 sing N N 267 PHE CZ HZ sing N N 268 PHE OXT HXT sing N N 269 PRO N CA sing N N 270 PRO N CD sing N N 271 PRO N H sing N N 272 PRO CA C sing N N 273 PRO CA CB sing N N 274 PRO CA HA sing N N 275 PRO C O doub N N 276 PRO C OXT sing N N 277 PRO CB CG sing N N 278 PRO CB HB2 sing N N 279 PRO CB HB3 sing N N 280 PRO CG CD sing N N 281 PRO CG HG2 sing N N 282 PRO CG HG3 sing N N 283 PRO CD HD2 sing N N 284 PRO CD HD3 sing N N 285 PRO OXT HXT sing N N 286 SER N CA sing N N 287 SER N H sing N N 288 SER N H2 sing N N 289 SER CA C sing N N 290 SER CA CB sing N N 291 SER CA HA sing N N 292 SER C O doub N N 293 SER C OXT sing N N 294 SER CB OG sing N N 295 SER CB HB2 sing N N 296 SER CB HB3 sing N N 297 SER OG HG sing N N 298 SER OXT HXT sing N N 299 THR N CA sing N N 300 THR N H sing N N 301 THR N H2 sing N N 302 THR CA C sing N N 303 THR CA CB sing N N 304 THR CA HA sing N N 305 THR C O doub N N 306 THR C OXT sing N N 307 THR CB OG1 sing N N 308 THR CB CG2 sing N N 309 THR CB HB sing N N 310 THR OG1 HG1 sing N N 311 THR CG2 HG21 sing N N 312 THR CG2 HG22 sing N N 313 THR CG2 HG23 sing N N 314 THR OXT HXT sing N N 315 TRP N CA sing N N 316 TRP N H sing N N 317 TRP N H2 sing N N 318 TRP CA C sing N N 319 TRP CA CB sing N N 320 TRP CA HA sing N N 321 TRP C O doub N N 322 TRP C OXT sing N N 323 TRP CB CG sing N N 324 TRP CB HB2 sing N N 325 TRP CB HB3 sing N N 326 TRP CG CD1 doub Y N 327 TRP CG CD2 sing Y N 328 TRP CD1 NE1 sing Y N 329 TRP CD1 HD1 sing N N 330 TRP CD2 CE2 doub Y N 331 TRP CD2 CE3 sing Y N 332 TRP NE1 CE2 sing Y N 333 TRP NE1 HE1 sing N N 334 TRP CE2 CZ2 sing Y N 335 TRP CE3 CZ3 doub Y N 336 TRP CE3 HE3 sing N N 337 TRP CZ2 CH2 doub Y N 338 TRP CZ2 HZ2 sing N N 339 TRP CZ3 CH2 sing Y N 340 TRP CZ3 HZ3 sing N N 341 TRP CH2 HH2 sing N N 342 TRP OXT HXT sing N N 343 TYR N CA sing N N 344 TYR N H sing N N 345 TYR N H2 sing N N 346 TYR CA C sing N N 347 TYR CA CB sing N N 348 TYR CA HA sing N N 349 TYR C O doub N N 350 TYR C OXT sing N N 351 TYR CB CG sing N N 352 TYR CB HB2 sing N N 353 TYR CB HB3 sing N N 354 TYR CG CD1 doub Y N 355 TYR CG CD2 sing Y N 356 TYR CD1 CE1 sing Y N 357 TYR CD1 HD1 sing N N 358 TYR CD2 CE2 doub Y N 359 TYR CD2 HD2 sing N N 360 TYR CE1 CZ doub Y N 361 TYR CE1 HE1 sing N N 362 TYR CE2 CZ sing Y N 363 TYR CE2 HE2 sing N N 364 TYR CZ OH sing N N 365 TYR OH HH sing N N 366 TYR OXT HXT sing N N 367 VAL N CA sing N N 368 VAL N H sing N N 369 VAL N H2 sing N N 370 VAL CA C sing N N 371 VAL CA CB sing N N 372 VAL CA HA sing N N 373 VAL C O doub N N 374 VAL C OXT sing N N 375 VAL CB CG1 sing N N 376 VAL CB CG2 sing N N 377 VAL CB HB sing N N 378 VAL CG1 HG11 sing N N 379 VAL CG1 HG12 sing N N 380 VAL CG1 HG13 sing N N 381 VAL CG2 HG21 sing N N 382 VAL CG2 HG22 sing N N 383 VAL CG2 HG23 sing N N 384 VAL OXT HXT sing N N 385 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BDP 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpAb BDP 'COMMON NAME' GMML 1.0 'b-D-glucopyranuronic acid' BDP 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpA BDP 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcA # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'beta-D-glucopyranuronic acid' BDP 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3GNE _pdbx_initial_refinement_model.details 'PDB ENTRY 3GNE' #