HEADER SIGNALING PROTEIN 09-AUG-09 3IM5 TITLE CRYSTAL STRUCTURE OF MOUSE RYANODINE RECEPTOR 2 (RESIDUES 1-217) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARDIAC CA2+ RELEASE CHANNEL; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RYR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA DE3 PLACI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28HMT KEYWDS RYANODINE RECEPTOR 2, CALCIUM RELEASE CHANNEL, CARDIAC CHANNEL, ION KEYWDS 2 CHANNEL, ARVC2, ARVD2, CPVT, CARDIAC ARRHYTHMIA, ION TRANSPORT, KEYWDS 3 IONIC CHANNEL, TRANSMEMBRANE, TRANSPORT, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.VAN PETEGEM,P.A.LOBO REVDAT 4 03-APR-24 3IM5 1 REMARK REVDAT 3 13-JUL-11 3IM5 1 VERSN REVDAT 2 01-DEC-09 3IM5 1 JRNL REVDAT 1 17-NOV-09 3IM5 0 JRNL AUTH P.A.LOBO,F.VAN PETEGEM JRNL TITL CRYSTAL STRUCTURES OF THE N-TERMINAL DOMAINS OF CARDIAC AND JRNL TITL 2 SKELETAL MUSCLE RYANODINE RECEPTORS: INSIGHTS INTO DISEASE JRNL TITL 3 MUTATIONS. JRNL REF STRUCTURE V. 17 1505 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19913485 JRNL DOI 10.1016/J.STR.2009.08.016 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 14423 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 761 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 665 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 59.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2615 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : -0.30000 REMARK 3 B33 (A**2) : -0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.97000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.490 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.327 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.219 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.139 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.863 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2675 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3648 ; 1.231 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 346 ; 7.147 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;32.866 ;24.057 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 408 ;16.457 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;19.470 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 438 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1983 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1731 ; 0.548 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2754 ; 1.059 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 944 ; 1.329 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 891 ; 2.222 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 217 REMARK 3 ORIGIN FOR THE GROUP (A): 22.5480 -18.0080 29.6580 REMARK 3 T TENSOR REMARK 3 T11: 0.0508 T22: 0.1350 REMARK 3 T33: 0.1068 T12: -0.0089 REMARK 3 T13: 0.0226 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 3.5122 L22: 1.8192 REMARK 3 L33: 1.8053 L12: 0.1154 REMARK 3 L13: 0.4675 L23: 0.1489 REMARK 3 S TENSOR REMARK 3 S11: 0.0189 S12: 0.2046 S13: 0.0491 REMARK 3 S21: -0.0376 S22: -0.0262 S23: -0.2154 REMARK 3 S31: 0.0270 S32: 0.0635 S33: 0.0073 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 217 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2710 -27.7430 60.2010 REMARK 3 T TENSOR REMARK 3 T11: 0.0847 T22: 0.1350 REMARK 3 T33: 0.0507 T12: -0.0122 REMARK 3 T13: -0.0237 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 1.9280 L22: 2.3037 REMARK 3 L33: 3.0494 L12: 0.2492 REMARK 3 L13: -0.6613 L23: -0.5270 REMARK 3 S TENSOR REMARK 3 S11: -0.0493 S12: -0.0252 S13: 0.0042 REMARK 3 S21: 0.0669 S22: -0.0109 S23: -0.1124 REMARK 3 S31: 0.0427 S32: 0.0779 S33: 0.0603 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IM5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054583. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15222 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 80.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.38100 REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.38200 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: RYR2 NTD V186M MUTANT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5-1.5M SODIUM MALONATE, PH 4.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 77.48550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.51500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 77.48550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.51500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 ALA A 4 REMARK 465 GLY A 5 REMARK 465 GLU A 6 REMARK 465 GLY A 7 REMARK 465 GLU A 8 REMARK 465 ASP A 9 REMARK 465 GLU A 10 REMARK 465 ILE A 11 REMARK 465 ASN A 54 REMARK 465 SER A 55 REMARK 465 LYS A 56 REMARK 465 ASN A 57 REMARK 465 GLU A 87 REMARK 465 LYS A 88 REMARK 465 SER A 89 REMARK 465 GLU A 90 REMARK 465 GLY A 91 REMARK 465 GLN A 92 REMARK 465 VAL A 93 REMARK 465 ASP A 94 REMARK 465 VAL A 95 REMARK 465 GLU A 96 REMARK 465 LYS A 97 REMARK 465 TRP A 98 REMARK 465 LYS A 99 REMARK 465 PHE A 100 REMARK 465 MET A 101 REMARK 465 MET A 102 REMARK 465 LYS A 103 REMARK 465 THR A 104 REMARK 465 ALA A 105 REMARK 465 GLN A 106 REMARK 465 GLY A 107 REMARK 465 GLY A 108 REMARK 465 GLY A 109 REMARK 465 ARG A 137 REMARK 465 SER A 138 REMARK 465 SER A 139 REMARK 465 THR A 140 REMARK 465 ASP A 141 REMARK 465 LYS A 142 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 ALA B 4 REMARK 465 GLY B 5 REMARK 465 GLU B 6 REMARK 465 GLY B 7 REMARK 465 GLU B 8 REMARK 465 ASP B 9 REMARK 465 GLU B 10 REMARK 465 ILE B 11 REMARK 465 HIS B 29 REMARK 465 LYS B 30 REMARK 465 GLU B 87 REMARK 465 LYS B 88 REMARK 465 SER B 89 REMARK 465 GLU B 90 REMARK 465 GLY B 91 REMARK 465 GLN B 92 REMARK 465 VAL B 93 REMARK 465 ASP B 94 REMARK 465 VAL B 95 REMARK 465 GLU B 96 REMARK 465 LYS B 97 REMARK 465 LYS B 99 REMARK 465 PHE B 100 REMARK 465 MET B 101 REMARK 465 MET B 102 REMARK 465 LYS B 103 REMARK 465 THR B 104 REMARK 465 ALA B 105 REMARK 465 GLN B 106 REMARK 465 GLY B 107 REMARK 465 GLY B 108 REMARK 465 GLY B 109 REMARK 465 ARG B 137 REMARK 465 SER B 138 REMARK 465 SER B 139 REMARK 465 THR B 140 REMARK 465 ASP B 141 REMARK 465 LYS B 142 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 12 CG CD OE1 NE2 REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 PHE A 42 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 45 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 58 CG1 CG2 REMARK 470 HIS A 110 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 111 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 125 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 143 CG CD1 CD2 REMARK 470 ASP A 152 CG OD1 OD2 REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 GLU A 171 CG CD OE1 OE2 REMARK 470 GLU A 189 CG CD OE1 OE2 REMARK 470 ILE A 217 CG1 CG2 CD1 REMARK 470 GLN B 12 CG CD OE1 NE2 REMARK 470 GLU B 31 CG CD OE1 OE2 REMARK 470 PHE B 42 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 55 OG REMARK 470 LYS B 56 CG CD CE NZ REMARK 470 TRP B 98 N CA C O REMARK 470 HIS B 110 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 111 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 125 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU B 143 CG CD1 CD2 REMARK 470 LYS B 167 CG CD CE NZ REMARK 470 GLN B 168 CG CD OE1 NE2 REMARK 470 ASN B 198 CG OD1 ND2 REMARK 470 ILE B 217 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 143 NH1 ARG A 190 2.08 REMARK 500 O LEU B 143 NH1 ARG B 190 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 17 -8.20 78.71 REMARK 500 ASN A 198 -70.56 -33.23 REMARK 500 ASP B 17 -9.36 79.86 REMARK 500 SER B 199 -7.01 -140.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ILA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RYANODINE RECEPTOR 1 VARIANT OF THE SAME REMARK 900 DOMAIN REMARK 900 RELATED ID: 3IM6 RELATED DB: PDB REMARK 900 RELATED ID: 3IM7 RELATED DB: PDB DBREF 3IM5 A 1 217 UNP Q9ERN6 Q9ERN6_MOUSE 1 217 DBREF 3IM5 B 1 217 UNP Q9ERN6 Q9ERN6_MOUSE 1 217 SEQRES 1 A 217 MET ALA ASP ALA GLY GLU GLY GLU ASP GLU ILE GLN PHE SEQRES 2 A 217 LEU ARG THR ASP ASP GLU VAL VAL LEU GLN CYS THR ALA SEQRES 3 A 217 THR ILE HIS LYS GLU GLN GLN LYS LEU CYS LEU ALA ALA SEQRES 4 A 217 GLU GLY PHE GLY ASN ARG LEU CYS PHE LEU GLU SER THR SEQRES 5 A 217 SER ASN SER LYS ASN VAL PRO PRO ASP LEU SER ILE CYS SEQRES 6 A 217 THR PHE VAL LEU GLU GLN SER LEU SER VAL ARG ALA LEU SEQRES 7 A 217 GLN GLU MET LEU ALA ASN THR VAL GLU LYS SER GLU GLY SEQRES 8 A 217 GLN VAL ASP VAL GLU LYS TRP LYS PHE MET MET LYS THR SEQRES 9 A 217 ALA GLN GLY GLY GLY HIS ARG THR LEU LEU TYR GLY HIS SEQRES 10 A 217 ALA ILE LEU LEU ARG HIS SER TYR SER GLY MET TYR LEU SEQRES 11 A 217 CYS CYS LEU SER THR SER ARG SER SER THR ASP LYS LEU SEQRES 12 A 217 ALA PHE ASP VAL GLY LEU GLN GLU ASP THR THR GLY GLU SEQRES 13 A 217 ALA CYS TRP TRP THR ILE HIS PRO ALA SER LYS GLN ARG SEQRES 14 A 217 SER GLU GLY GLU LYS VAL ARG VAL GLY ASP ASP LEU ILE SEQRES 15 A 217 LEU VAL SER VAL SER SER GLU ARG TYR LEU HIS LEU SER SEQRES 16 A 217 TYR GLY ASN SER SER TRP HIS VAL ASP ALA ALA PHE GLN SEQRES 17 A 217 GLN THR LEU TRP SER VAL ALA PRO ILE SEQRES 1 B 217 MET ALA ASP ALA GLY GLU GLY GLU ASP GLU ILE GLN PHE SEQRES 2 B 217 LEU ARG THR ASP ASP GLU VAL VAL LEU GLN CYS THR ALA SEQRES 3 B 217 THR ILE HIS LYS GLU GLN GLN LYS LEU CYS LEU ALA ALA SEQRES 4 B 217 GLU GLY PHE GLY ASN ARG LEU CYS PHE LEU GLU SER THR SEQRES 5 B 217 SER ASN SER LYS ASN VAL PRO PRO ASP LEU SER ILE CYS SEQRES 6 B 217 THR PHE VAL LEU GLU GLN SER LEU SER VAL ARG ALA LEU SEQRES 7 B 217 GLN GLU MET LEU ALA ASN THR VAL GLU LYS SER GLU GLY SEQRES 8 B 217 GLN VAL ASP VAL GLU LYS TRP LYS PHE MET MET LYS THR SEQRES 9 B 217 ALA GLN GLY GLY GLY HIS ARG THR LEU LEU TYR GLY HIS SEQRES 10 B 217 ALA ILE LEU LEU ARG HIS SER TYR SER GLY MET TYR LEU SEQRES 11 B 217 CYS CYS LEU SER THR SER ARG SER SER THR ASP LYS LEU SEQRES 12 B 217 ALA PHE ASP VAL GLY LEU GLN GLU ASP THR THR GLY GLU SEQRES 13 B 217 ALA CYS TRP TRP THR ILE HIS PRO ALA SER LYS GLN ARG SEQRES 14 B 217 SER GLU GLY GLU LYS VAL ARG VAL GLY ASP ASP LEU ILE SEQRES 15 B 217 LEU VAL SER VAL SER SER GLU ARG TYR LEU HIS LEU SER SEQRES 16 B 217 TYR GLY ASN SER SER TRP HIS VAL ASP ALA ALA PHE GLN SEQRES 17 B 217 GLN THR LEU TRP SER VAL ALA PRO ILE FORMUL 3 HOH *34(H2 O) HELIX 1 1 LEU A 62 ILE A 64 5 3 HELIX 2 2 SER A 74 VAL A 86 1 13 HELIX 3 3 LEU B 62 CYS B 65 5 4 HELIX 4 4 SER B 74 VAL B 86 1 13 SHEET 1 A 9 PHE A 48 SER A 51 0 SHEET 2 A 9 GLU A 31 ALA A 38 -1 N ALA A 38 O PHE A 48 SHEET 3 A 9 GLU A 19 ILE A 28 -1 N ALA A 26 O GLN A 33 SHEET 4 A 9 TRP A 212 PRO A 216 -1 O SER A 213 N GLN A 23 SHEET 5 A 9 ASP A 180 SER A 185 -1 N LEU A 181 O TRP A 212 SHEET 6 A 9 TRP A 159 PRO A 164 -1 N HIS A 163 O ILE A 182 SHEET 7 A 9 ALA A 118 HIS A 123 -1 N ILE A 119 O TRP A 160 SHEET 8 A 9 THR A 66 LEU A 73 -1 N LEU A 73 O ALA A 118 SHEET 9 A 9 GLU A 19 ILE A 28 -1 N VAL A 20 O PHE A 67 SHEET 1 B 4 TYR A 129 CYS A 132 0 SHEET 2 B 4 PHE A 145 GLN A 150 -1 O GLY A 148 N CYS A 131 SHEET 3 B 4 TRP A 201 ALA A 206 -1 O ALA A 205 N PHE A 145 SHEET 4 B 4 TYR A 191 TYR A 196 -1 N TYR A 191 O ALA A 206 SHEET 1 C 9 PHE B 48 SER B 51 0 SHEET 2 C 9 GLN B 33 ALA B 38 -1 N ALA B 38 O PHE B 48 SHEET 3 C 9 GLU B 19 ALA B 26 -1 N ALA B 26 O GLN B 33 SHEET 4 C 9 LEU B 211 PRO B 216 -1 O SER B 213 N GLN B 23 SHEET 5 C 9 ASP B 180 SER B 185 -1 N LEU B 181 O TRP B 212 SHEET 6 C 9 TRP B 160 PRO B 164 -1 N HIS B 163 O ILE B 182 SHEET 7 C 9 ALA B 118 HIS B 123 -1 N ILE B 119 O TRP B 160 SHEET 8 C 9 PHE B 67 LEU B 73 -1 N LEU B 73 O ALA B 118 SHEET 9 C 9 GLU B 19 ALA B 26 -1 N VAL B 20 O PHE B 67 SHEET 1 D 4 TYR B 129 CYS B 132 0 SHEET 2 D 4 PHE B 145 GLN B 150 -1 O GLY B 148 N CYS B 131 SHEET 3 D 4 TRP B 201 ALA B 206 -1 O ALA B 205 N PHE B 145 SHEET 4 D 4 TYR B 191 TYR B 196 -1 N HIS B 193 O ASP B 204 SSBOND 1 CYS A 36 CYS A 65 1555 1555 2.08 SSBOND 2 CYS B 36 CYS B 65 1555 1555 2.05 CRYST1 154.971 39.030 107.623 90.00 131.81 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006453 0.000000 0.005772 0.00000 SCALE2 0.000000 0.025621 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012466 0.00000