data_3IMK # _entry.id 3IMK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3IMK pdb_00003imk 10.2210/pdb3imk/pdb RCSB RCSB054598 ? ? WWPDB D_1000054598 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 392645 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3IMK _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-08-10 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of Putative molybdenum carrier protein (YP_461806.1) from SYNTROPHUS ACIDITROPHICUS SB at 1.45 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3IMK _cell.length_a 41.250 _cell.length_b 59.255 _cell.length_c 64.953 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3IMK _symmetry.Int_Tables_number 19 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative molybdenum carrier protein' 17463.334 1 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 3 non-polymer syn '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 195.237 1 ? ? ? ? 4 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 1 ? ? ? ? 5 non-polymer syn '1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE' 266.331 1 ? ? ? ? 6 water nat water 18.015 203 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)DEKPAITKIISGGQTGADRAALDFAIKHHIPYGGWVPKGRLAEGGRVPETYQLQE(MSE)PTSDYSKRTEKNVL DSDGTLIISHGILKGGSALTEFFAEQYKKPCLHIDLDRISIEDAATLINSWTVSHHIQVLNIAGPRAGKDPEIYQAT (MSE)DLLEVFLA ; _entity_poly.pdbx_seq_one_letter_code_can ;GMDEKPAITKIISGGQTGADRAALDFAIKHHIPYGGWVPKGRLAEGGRVPETYQLQEMPTSDYSKRTEKNVLDSDGTLII SHGILKGGSALTEFFAEQYKKPCLHIDLDRISIEDAATLINSWTVSHHIQVLNIAGPRAGKDPEIYQATMDLLEVFLA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 392645 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 ASP n 1 4 GLU n 1 5 LYS n 1 6 PRO n 1 7 ALA n 1 8 ILE n 1 9 THR n 1 10 LYS n 1 11 ILE n 1 12 ILE n 1 13 SER n 1 14 GLY n 1 15 GLY n 1 16 GLN n 1 17 THR n 1 18 GLY n 1 19 ALA n 1 20 ASP n 1 21 ARG n 1 22 ALA n 1 23 ALA n 1 24 LEU n 1 25 ASP n 1 26 PHE n 1 27 ALA n 1 28 ILE n 1 29 LYS n 1 30 HIS n 1 31 HIS n 1 32 ILE n 1 33 PRO n 1 34 TYR n 1 35 GLY n 1 36 GLY n 1 37 TRP n 1 38 VAL n 1 39 PRO n 1 40 LYS n 1 41 GLY n 1 42 ARG n 1 43 LEU n 1 44 ALA n 1 45 GLU n 1 46 GLY n 1 47 GLY n 1 48 ARG n 1 49 VAL n 1 50 PRO n 1 51 GLU n 1 52 THR n 1 53 TYR n 1 54 GLN n 1 55 LEU n 1 56 GLN n 1 57 GLU n 1 58 MSE n 1 59 PRO n 1 60 THR n 1 61 SER n 1 62 ASP n 1 63 TYR n 1 64 SER n 1 65 LYS n 1 66 ARG n 1 67 THR n 1 68 GLU n 1 69 LYS n 1 70 ASN n 1 71 VAL n 1 72 LEU n 1 73 ASP n 1 74 SER n 1 75 ASP n 1 76 GLY n 1 77 THR n 1 78 LEU n 1 79 ILE n 1 80 ILE n 1 81 SER n 1 82 HIS n 1 83 GLY n 1 84 ILE n 1 85 LEU n 1 86 LYS n 1 87 GLY n 1 88 GLY n 1 89 SER n 1 90 ALA n 1 91 LEU n 1 92 THR n 1 93 GLU n 1 94 PHE n 1 95 PHE n 1 96 ALA n 1 97 GLU n 1 98 GLN n 1 99 TYR n 1 100 LYS n 1 101 LYS n 1 102 PRO n 1 103 CYS n 1 104 LEU n 1 105 HIS n 1 106 ILE n 1 107 ASP n 1 108 LEU n 1 109 ASP n 1 110 ARG n 1 111 ILE n 1 112 SER n 1 113 ILE n 1 114 GLU n 1 115 ASP n 1 116 ALA n 1 117 ALA n 1 118 THR n 1 119 LEU n 1 120 ILE n 1 121 ASN n 1 122 SER n 1 123 TRP n 1 124 THR n 1 125 VAL n 1 126 SER n 1 127 HIS n 1 128 HIS n 1 129 ILE n 1 130 GLN n 1 131 VAL n 1 132 LEU n 1 133 ASN n 1 134 ILE n 1 135 ALA n 1 136 GLY n 1 137 PRO n 1 138 ARG n 1 139 ALA n 1 140 GLY n 1 141 LYS n 1 142 ASP n 1 143 PRO n 1 144 GLU n 1 145 ILE n 1 146 TYR n 1 147 GLN n 1 148 ALA n 1 149 THR n 1 150 MSE n 1 151 ASP n 1 152 LEU n 1 153 LEU n 1 154 GLU n 1 155 VAL n 1 156 PHE n 1 157 LEU n 1 158 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SYNAS_17590, SYN_02013, YP_461806.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Syntrophus aciditrophicus SB' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 56780 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q2LU76_SYNAS _struct_ref.pdbx_db_accession Q2LU76 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDEKPAITKIISGGQTGADRAALDFAIKHHIPYGGWVPKGRLAEGGRVPETYQLQEMPTSDYSKRTEKNVLDSDGTLIIS HGILKGGSALTEFFAEQYKKPCLHIDLDRISIEDAATLINSWTVSHHIQVLNIAGPRAGKDPEIYQATMDLLEVFLA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3IMK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 158 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q2LU76 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 157 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 157 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3IMK _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q2LU76 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MES non-polymer . '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' ? 'C6 H13 N O4 S' 195.237 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PG6 non-polymer . '1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE' ? 'C12 H26 O6' 266.331 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3IMK # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 45.88 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '10.0000% Glycerol, 5.0000% PEG-1000, 30.0000% PEG-600, 0.1M MES pH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2009-05-13 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97936 1.0 3 0.97922 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91837,0.97936,0.97922 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3IMK _reflns.d_resolution_high 1.45 _reflns.d_resolution_low 28.479 _reflns.number_obs 28613 _reflns.pdbx_Rmerge_I_obs 0.050 _reflns.pdbx_netI_over_sigmaI 15.200 _reflns.percent_possible_obs 98.400 _reflns.B_iso_Wilson_estimate 15.264 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.45 1.50 15970 ? 4895 0.593 2.3 ? ? ? ? ? 93.30 1 1 1.50 1.56 18089 ? 5366 0.406 3.3 ? ? ? ? ? 98.10 2 1 1.56 1.63 18195 ? 5400 0.313 4.3 ? ? ? ? ? 99.10 3 1 1.63 1.72 19242 ? 5686 0.230 5.8 ? ? ? ? ? 98.90 4 1 1.72 1.83 18507 ? 5449 0.150 8.4 ? ? ? ? ? 99.20 5 1 1.83 1.97 18219 ? 5363 0.096 12.5 ? ? ? ? ? 99.20 6 1 1.97 2.17 18430 ? 5425 0.058 18.9 ? ? ? ? ? 99.20 7 1 2.17 2.48 18156 ? 5333 0.040 24.7 ? ? ? ? ? 99.20 8 1 2.48 3.12 18466 ? 5382 0.032 31.4 ? ? ? ? ? 99.10 9 1 3.12 28.479 18430 ? 5419 0.027 39.7 ? ? ? ? ? 98.50 10 1 # _refine.entry_id 3IMK _refine.ls_d_res_high 1.450 _refine.ls_d_res_low 28.479 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.890 _refine.ls_number_reflns_obs 28572 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 4. GLYCEROL (GOL), 2-(N-MORPHOLINO)-ETHANESULFONIC ACID (MES) AND PEG1000 OR PEG600 FRAGMENT(PG4 AND PG6) MOLECULES ARE MODELED BASED ON CRYSTALLIZATION CONDITION. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.154 _refine.ls_R_factor_R_work 0.152 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.177 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1450 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 17.087 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.390 _refine.aniso_B[2][2] -0.100 _refine.aniso_B[3][3] -0.290 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.971 _refine.correlation_coeff_Fo_to_Fc_free 0.964 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.061 _refine.pdbx_overall_ESU_R_Free 0.062 _refine.overall_SU_ML 0.036 _refine.overall_SU_B 1.835 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 58.09 _refine.B_iso_min 8.25 _refine.occupancy_max 1.00 _refine.occupancy_min 0.30 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1208 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 55 _refine_hist.number_atoms_solvent 203 _refine_hist.number_atoms_total 1466 _refine_hist.d_res_high 1.450 _refine_hist.d_res_low 28.479 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1351 0.016 0.021 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 933 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 1816 1.515 1.998 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 2293 0.942 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 166 5.214 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 55 34.395 24.545 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 215 10.987 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 6 8.099 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 195 0.096 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 1462 0.008 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 246 0.001 0.020 ? ? r_nbd_refined 'X-RAY DIFFRACTION' 272 0.227 0.200 ? ? r_nbd_other 'X-RAY DIFFRACTION' 937 0.190 0.200 ? ? r_nbtor_refined 'X-RAY DIFFRACTION' 654 0.174 0.200 ? ? r_nbtor_other 'X-RAY DIFFRACTION' 605 0.088 0.200 ? ? r_xyhbond_nbd_refined 'X-RAY DIFFRACTION' 136 0.146 0.200 ? ? r_symmetry_vdw_refined 'X-RAY DIFFRACTION' 11 0.104 0.200 ? ? r_symmetry_vdw_other 'X-RAY DIFFRACTION' 28 0.224 0.200 ? ? r_symmetry_hbond_refined 'X-RAY DIFFRACTION' 23 0.131 0.200 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 886 1.649 3.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 332 0.388 3.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1311 2.161 5.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 583 3.868 8.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 505 5.211 11.000 ? ? # _refine_ls_shell.d_res_high 1.450 _refine_ls_shell.d_res_low 1.488 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 93.660 _refine_ls_shell.number_reflns_R_work 1854 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.237 _refine_ls_shell.R_factor_R_free 0.269 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 110 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1964 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3IMK _struct.title 'Crystal structure of Putative molybdenum carrier protein (YP_461806.1) from SYNTROPHUS ACIDITROPHICUS SB at 1.45 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;YP_461806.1, Putative molybdenum carrier protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function, METAL BINDING PROTEIN ; _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' _struct_keywords.entry_id 3IMK # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 6 ? # _struct_biol.id 1 _struct_biol.details 'ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A MONOMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 18 ? HIS A 30 ? GLY A 17 HIS A 29 1 ? 13 HELX_P HELX_P2 2 PRO A 39 ? LEU A 43 ? PRO A 38 LEU A 42 5 ? 5 HELX_P HELX_P3 3 ASP A 62 ? ASP A 73 ? ASP A 61 ASP A 72 1 ? 12 HELX_P HELX_P4 4 LYS A 86 ? TYR A 99 ? LYS A 85 TYR A 98 1 ? 14 HELX_P HELX_P5 5 SER A 112 ? HIS A 127 ? SER A 111 HIS A 126 1 ? 16 HELX_P HELX_P6 6 GLU A 144 ? ALA A 158 ? GLU A 143 ALA A 157 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 C ? ? ? 1_555 A MSE 2 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A ASP 3 N ? ? A MSE 1 A ASP 2 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale3 covale both ? A GLU 57 C ? ? ? 1_555 A MSE 58 N ? ? A GLU 56 A MSE 57 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale4 covale both ? A MSE 58 C ? ? ? 1_555 A PRO 59 N ? ? A MSE 57 A PRO 58 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale5 covale both ? A THR 149 C ? ? ? 1_555 A MSE 150 N A ? A THR 148 A MSE 149 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale6 covale both ? A THR 149 C ? ? ? 1_555 A MSE 150 N B ? A THR 148 A MSE 149 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale7 covale both ? A MSE 150 C A ? ? 1_555 A ASP 151 N ? ? A MSE 149 A ASP 150 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale8 covale both ? A MSE 150 C B ? ? 1_555 A ASP 151 N ? ? A MSE 149 A ASP 150 1_555 ? ? ? ? ? ? ? 1.330 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 34 ? GLY A 35 ? TYR A 33 GLY A 34 A 2 LYS A 10 ? ILE A 12 ? LYS A 9 ILE A 11 A 3 VAL A 131 ? ALA A 135 ? VAL A 130 ALA A 134 A 4 GLY A 76 ? SER A 81 ? GLY A 75 SER A 80 A 5 CYS A 103 ? ASP A 107 ? CYS A 102 ASP A 106 B 1 TRP A 37 ? VAL A 38 ? TRP A 36 VAL A 37 B 2 GLN A 56 ? GLU A 57 ? GLN A 55 GLU A 56 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 35 ? O GLY A 34 N ILE A 11 ? N ILE A 10 A 2 3 N LYS A 10 ? N LYS A 9 O LEU A 132 ? O LEU A 131 A 3 4 O ASN A 133 ? O ASN A 132 N LEU A 78 ? N LEU A 77 A 4 5 N ILE A 79 ? N ILE A 78 O ILE A 106 ? O ILE A 105 B 1 2 N VAL A 38 ? N VAL A 37 O GLN A 56 ? O GLN A 55 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 158 ? 10 'BINDING SITE FOR RESIDUE GOL A 158' AC2 Software A GOL 159 ? 8 'BINDING SITE FOR RESIDUE GOL A 159' AC3 Software A MES 160 ? 6 'BINDING SITE FOR RESIDUE MES A 160' AC4 Software A PG4 161 ? 5 'BINDING SITE FOR RESIDUE PG4 A 161' AC5 Software A PG6 162 ? 3 'BINDING SITE FOR RESIDUE PG6 A 162' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 GLY A 14 ? GLY A 13 . ? 1_555 ? 2 AC1 10 ASP A 20 ? ASP A 19 . ? 1_555 ? 3 AC1 10 ARG A 66 ? ARG A 65 . ? 1_555 ? 4 AC1 10 GLY A 88 ? GLY A 87 . ? 1_555 ? 5 AC1 10 SER A 89 ? SER A 88 . ? 1_555 ? 6 AC1 10 THR A 92 ? THR A 91 . ? 1_555 ? 7 AC1 10 ALA A 135 ? ALA A 134 . ? 1_555 ? 8 AC1 10 GLY A 136 ? GLY A 135 . ? 1_555 ? 9 AC1 10 HOH G . ? HOH A 211 . ? 1_555 ? 10 AC1 10 HOH G . ? HOH A 342 . ? 1_555 ? 11 AC2 8 LYS A 5 ? LYS A 4 . ? 4_455 ? 12 AC2 8 PRO A 6 ? PRO A 5 . ? 4_455 ? 13 AC2 8 HIS A 105 ? HIS A 104 . ? 1_555 ? 14 AC2 8 ASP A 107 ? ASP A 106 . ? 1_555 ? 15 AC2 8 LEU A 119 ? LEU A 118 . ? 1_555 ? 16 AC2 8 HOH G . ? HOH A 183 . ? 1_555 ? 17 AC2 8 HOH G . ? HOH A 354 . ? 1_555 ? 18 AC2 8 HOH G . ? HOH A 363 . ? 1_555 ? 19 AC3 6 THR A 17 ? THR A 16 . ? 1_555 ? 20 AC3 6 GLY A 18 ? GLY A 17 . ? 1_555 ? 21 AC3 6 ALA A 139 ? ALA A 138 . ? 1_555 ? 22 AC3 6 TYR A 146 ? TYR A 145 . ? 1_555 ? 23 AC3 6 HOH G . ? HOH A 246 . ? 1_555 ? 24 AC3 6 HOH G . ? HOH A 345 . ? 1_555 ? 25 AC4 5 MSE A 2 ? MSE A 1 . ? 4_555 ? 26 AC4 5 LYS A 10 ? LYS A 9 . ? 1_555 ? 27 AC4 5 TYR A 34 ? TYR A 33 . ? 1_555 ? 28 AC4 5 ASP A 73 ? ASP A 72 . ? 1_555 ? 29 AC4 5 HOH G . ? HOH A 206 . ? 1_555 ? 30 AC5 3 TRP A 37 ? TRP A 36 . ? 1_555 ? 31 AC5 3 LYS A 69 ? LYS A 68 . ? 1_555 ? 32 AC5 3 ASP A 73 ? ASP A 72 . ? 1_555 ? # _atom_sites.entry_id 3IMK _atom_sites.fract_transf_matrix[1][1] 0.024242 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016876 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015396 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 ASP 3 2 2 ASP ASP A . n A 1 4 GLU 4 3 3 GLU GLU A . n A 1 5 LYS 5 4 4 LYS LYS A . n A 1 6 PRO 6 5 5 PRO PRO A . n A 1 7 ALA 7 6 6 ALA ALA A . n A 1 8 ILE 8 7 7 ILE ILE A . n A 1 9 THR 9 8 8 THR THR A . n A 1 10 LYS 10 9 9 LYS LYS A . n A 1 11 ILE 11 10 10 ILE ILE A . n A 1 12 ILE 12 11 11 ILE ILE A . n A 1 13 SER 13 12 12 SER SER A . n A 1 14 GLY 14 13 13 GLY GLY A . n A 1 15 GLY 15 14 14 GLY GLY A . n A 1 16 GLN 16 15 15 GLN GLN A . n A 1 17 THR 17 16 16 THR THR A . n A 1 18 GLY 18 17 17 GLY GLY A . n A 1 19 ALA 19 18 18 ALA ALA A . n A 1 20 ASP 20 19 19 ASP ASP A . n A 1 21 ARG 21 20 20 ARG ARG A . n A 1 22 ALA 22 21 21 ALA ALA A . n A 1 23 ALA 23 22 22 ALA ALA A . n A 1 24 LEU 24 23 23 LEU LEU A . n A 1 25 ASP 25 24 24 ASP ASP A . n A 1 26 PHE 26 25 25 PHE PHE A . n A 1 27 ALA 27 26 26 ALA ALA A . n A 1 28 ILE 28 27 27 ILE ILE A . n A 1 29 LYS 29 28 28 LYS LYS A . n A 1 30 HIS 30 29 29 HIS HIS A . n A 1 31 HIS 31 30 30 HIS HIS A . n A 1 32 ILE 32 31 31 ILE ILE A . n A 1 33 PRO 33 32 32 PRO PRO A . n A 1 34 TYR 34 33 33 TYR TYR A . n A 1 35 GLY 35 34 34 GLY GLY A . n A 1 36 GLY 36 35 35 GLY GLY A . n A 1 37 TRP 37 36 36 TRP TRP A . n A 1 38 VAL 38 37 37 VAL VAL A . n A 1 39 PRO 39 38 38 PRO PRO A . n A 1 40 LYS 40 39 39 LYS LYS A . n A 1 41 GLY 41 40 40 GLY GLY A . n A 1 42 ARG 42 41 41 ARG ARG A . n A 1 43 LEU 43 42 42 LEU LEU A . n A 1 44 ALA 44 43 43 ALA ALA A . n A 1 45 GLU 45 44 44 GLU GLU A . n A 1 46 GLY 46 45 45 GLY GLY A . n A 1 47 GLY 47 46 46 GLY GLY A . n A 1 48 ARG 48 47 47 ARG ARG A . n A 1 49 VAL 49 48 48 VAL VAL A . n A 1 50 PRO 50 49 49 PRO PRO A . n A 1 51 GLU 51 50 50 GLU GLU A . n A 1 52 THR 52 51 51 THR THR A . n A 1 53 TYR 53 52 52 TYR TYR A . n A 1 54 GLN 54 53 53 GLN GLN A . n A 1 55 LEU 55 54 54 LEU LEU A . n A 1 56 GLN 56 55 55 GLN GLN A . n A 1 57 GLU 57 56 56 GLU GLU A . n A 1 58 MSE 58 57 57 MSE MSE A . n A 1 59 PRO 59 58 58 PRO PRO A . n A 1 60 THR 60 59 59 THR THR A . n A 1 61 SER 61 60 60 SER SER A . n A 1 62 ASP 62 61 61 ASP ASP A . n A 1 63 TYR 63 62 62 TYR TYR A . n A 1 64 SER 64 63 63 SER SER A . n A 1 65 LYS 65 64 64 LYS LYS A . n A 1 66 ARG 66 65 65 ARG ARG A . n A 1 67 THR 67 66 66 THR THR A . n A 1 68 GLU 68 67 67 GLU GLU A . n A 1 69 LYS 69 68 68 LYS LYS A . n A 1 70 ASN 70 69 69 ASN ASN A . n A 1 71 VAL 71 70 70 VAL VAL A . n A 1 72 LEU 72 71 71 LEU LEU A . n A 1 73 ASP 73 72 72 ASP ASP A . n A 1 74 SER 74 73 73 SER SER A . n A 1 75 ASP 75 74 74 ASP ASP A . n A 1 76 GLY 76 75 75 GLY GLY A . n A 1 77 THR 77 76 76 THR THR A . n A 1 78 LEU 78 77 77 LEU LEU A . n A 1 79 ILE 79 78 78 ILE ILE A . n A 1 80 ILE 80 79 79 ILE ILE A . n A 1 81 SER 81 80 80 SER SER A . n A 1 82 HIS 82 81 81 HIS HIS A . n A 1 83 GLY 83 82 82 GLY GLY A . n A 1 84 ILE 84 83 83 ILE ILE A . n A 1 85 LEU 85 84 84 LEU LEU A . n A 1 86 LYS 86 85 85 LYS LYS A . n A 1 87 GLY 87 86 86 GLY GLY A . n A 1 88 GLY 88 87 87 GLY GLY A . n A 1 89 SER 89 88 88 SER SER A . n A 1 90 ALA 90 89 89 ALA ALA A . n A 1 91 LEU 91 90 90 LEU LEU A . n A 1 92 THR 92 91 91 THR THR A . n A 1 93 GLU 93 92 92 GLU GLU A . n A 1 94 PHE 94 93 93 PHE PHE A . n A 1 95 PHE 95 94 94 PHE PHE A . n A 1 96 ALA 96 95 95 ALA ALA A . n A 1 97 GLU 97 96 96 GLU GLU A . n A 1 98 GLN 98 97 97 GLN GLN A . n A 1 99 TYR 99 98 98 TYR TYR A . n A 1 100 LYS 100 99 99 LYS LYS A . n A 1 101 LYS 101 100 100 LYS LYS A . n A 1 102 PRO 102 101 101 PRO PRO A . n A 1 103 CYS 103 102 102 CYS CYS A . n A 1 104 LEU 104 103 103 LEU LEU A . n A 1 105 HIS 105 104 104 HIS HIS A . n A 1 106 ILE 106 105 105 ILE ILE A . n A 1 107 ASP 107 106 106 ASP ASP A . n A 1 108 LEU 108 107 107 LEU LEU A . n A 1 109 ASP 109 108 108 ASP ASP A . n A 1 110 ARG 110 109 109 ARG ARG A . n A 1 111 ILE 111 110 110 ILE ILE A . n A 1 112 SER 112 111 111 SER SER A . n A 1 113 ILE 113 112 112 ILE ILE A . n A 1 114 GLU 114 113 113 GLU GLU A . n A 1 115 ASP 115 114 114 ASP ASP A . n A 1 116 ALA 116 115 115 ALA ALA A . n A 1 117 ALA 117 116 116 ALA ALA A . n A 1 118 THR 118 117 117 THR THR A . n A 1 119 LEU 119 118 118 LEU LEU A . n A 1 120 ILE 120 119 119 ILE ILE A . n A 1 121 ASN 121 120 120 ASN ASN A . n A 1 122 SER 122 121 121 SER SER A . n A 1 123 TRP 123 122 122 TRP TRP A . n A 1 124 THR 124 123 123 THR THR A . n A 1 125 VAL 125 124 124 VAL VAL A . n A 1 126 SER 126 125 125 SER SER A . n A 1 127 HIS 127 126 126 HIS HIS A . n A 1 128 HIS 128 127 127 HIS HIS A . n A 1 129 ILE 129 128 128 ILE ILE A . n A 1 130 GLN 130 129 129 GLN GLN A . n A 1 131 VAL 131 130 130 VAL VAL A . n A 1 132 LEU 132 131 131 LEU LEU A . n A 1 133 ASN 133 132 132 ASN ASN A . n A 1 134 ILE 134 133 133 ILE ILE A . n A 1 135 ALA 135 134 134 ALA ALA A . n A 1 136 GLY 136 135 135 GLY GLY A . n A 1 137 PRO 137 136 136 PRO PRO A . n A 1 138 ARG 138 137 137 ARG ARG A . n A 1 139 ALA 139 138 138 ALA ALA A . n A 1 140 GLY 140 139 139 GLY GLY A . n A 1 141 LYS 141 140 140 LYS LYS A . n A 1 142 ASP 142 141 141 ASP ASP A . n A 1 143 PRO 143 142 142 PRO PRO A . n A 1 144 GLU 144 143 143 GLU GLU A . n A 1 145 ILE 145 144 144 ILE ILE A . n A 1 146 TYR 146 145 145 TYR TYR A . n A 1 147 GLN 147 146 146 GLN GLN A . n A 1 148 ALA 148 147 147 ALA ALA A . n A 1 149 THR 149 148 148 THR THR A . n A 1 150 MSE 150 149 149 MSE MSE A . n A 1 151 ASP 151 150 150 ASP ASP A . n A 1 152 LEU 152 151 151 LEU LEU A . n A 1 153 LEU 153 152 152 LEU LEU A . n A 1 154 GLU 154 153 153 GLU GLU A . n A 1 155 VAL 155 154 154 VAL VAL A . n A 1 156 PHE 156 155 155 PHE PHE A . n A 1 157 LEU 157 156 156 LEU LEU A . n A 1 158 ALA 158 157 157 ALA ALA A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 158 1 GOL GOL A . C 2 GOL 1 159 2 GOL GOL A . D 3 MES 1 160 3 MES MES A . E 4 PG4 1 161 4 PG4 PG4 A . F 5 PG6 1 162 5 PG6 PG6 A . G 6 HOH 1 163 163 HOH HOH A . G 6 HOH 2 164 164 HOH HOH A . G 6 HOH 3 165 165 HOH HOH A . G 6 HOH 4 166 166 HOH HOH A . G 6 HOH 5 167 167 HOH HOH A . G 6 HOH 6 168 168 HOH HOH A . G 6 HOH 7 169 169 HOH HOH A . G 6 HOH 8 170 170 HOH HOH A . G 6 HOH 9 171 171 HOH HOH A . G 6 HOH 10 172 172 HOH HOH A . G 6 HOH 11 173 173 HOH HOH A . G 6 HOH 12 174 174 HOH HOH A . G 6 HOH 13 175 175 HOH HOH A . G 6 HOH 14 176 176 HOH HOH A . G 6 HOH 15 177 177 HOH HOH A . G 6 HOH 16 178 178 HOH HOH A . G 6 HOH 17 179 179 HOH HOH A . G 6 HOH 18 180 180 HOH HOH A . G 6 HOH 19 181 181 HOH HOH A . G 6 HOH 20 182 182 HOH HOH A . G 6 HOH 21 183 183 HOH HOH A . G 6 HOH 22 184 184 HOH HOH A . G 6 HOH 23 185 185 HOH HOH A . G 6 HOH 24 186 186 HOH HOH A . G 6 HOH 25 187 187 HOH HOH A . G 6 HOH 26 188 188 HOH HOH A . G 6 HOH 27 189 189 HOH HOH A . G 6 HOH 28 190 190 HOH HOH A . G 6 HOH 29 191 191 HOH HOH A . G 6 HOH 30 192 192 HOH HOH A . G 6 HOH 31 193 193 HOH HOH A . G 6 HOH 32 194 194 HOH HOH A . G 6 HOH 33 195 195 HOH HOH A . G 6 HOH 34 196 196 HOH HOH A . G 6 HOH 35 197 197 HOH HOH A . G 6 HOH 36 198 198 HOH HOH A . G 6 HOH 37 199 199 HOH HOH A . G 6 HOH 38 200 200 HOH HOH A . G 6 HOH 39 201 201 HOH HOH A . G 6 HOH 40 202 202 HOH HOH A . G 6 HOH 41 203 203 HOH HOH A . G 6 HOH 42 204 204 HOH HOH A . G 6 HOH 43 205 205 HOH HOH A . G 6 HOH 44 206 206 HOH HOH A . G 6 HOH 45 207 207 HOH HOH A . G 6 HOH 46 208 208 HOH HOH A . G 6 HOH 47 209 6 HOH HOH A . G 6 HOH 48 210 7 HOH HOH A . G 6 HOH 49 211 8 HOH HOH A . G 6 HOH 50 212 9 HOH HOH A . G 6 HOH 51 213 10 HOH HOH A . G 6 HOH 52 214 11 HOH HOH A . G 6 HOH 53 215 12 HOH HOH A . G 6 HOH 54 216 13 HOH HOH A . G 6 HOH 55 217 14 HOH HOH A . G 6 HOH 56 218 15 HOH HOH A . G 6 HOH 57 219 16 HOH HOH A . G 6 HOH 58 220 17 HOH HOH A . G 6 HOH 59 221 18 HOH HOH A . G 6 HOH 60 222 19 HOH HOH A . G 6 HOH 61 223 20 HOH HOH A . G 6 HOH 62 224 21 HOH HOH A . G 6 HOH 63 225 22 HOH HOH A . G 6 HOH 64 226 23 HOH HOH A . G 6 HOH 65 227 24 HOH HOH A . G 6 HOH 66 228 25 HOH HOH A . G 6 HOH 67 229 26 HOH HOH A . G 6 HOH 68 230 27 HOH HOH A . G 6 HOH 69 231 28 HOH HOH A . G 6 HOH 70 232 29 HOH HOH A . G 6 HOH 71 233 30 HOH HOH A . G 6 HOH 72 234 31 HOH HOH A . G 6 HOH 73 235 32 HOH HOH A . G 6 HOH 74 236 33 HOH HOH A . G 6 HOH 75 237 34 HOH HOH A . G 6 HOH 76 238 35 HOH HOH A . G 6 HOH 77 239 36 HOH HOH A . G 6 HOH 78 240 37 HOH HOH A . G 6 HOH 79 241 38 HOH HOH A . G 6 HOH 80 242 39 HOH HOH A . G 6 HOH 81 243 40 HOH HOH A . G 6 HOH 82 244 41 HOH HOH A . G 6 HOH 83 245 42 HOH HOH A . G 6 HOH 84 246 43 HOH HOH A . G 6 HOH 85 247 44 HOH HOH A . G 6 HOH 86 248 45 HOH HOH A . G 6 HOH 87 249 46 HOH HOH A . G 6 HOH 88 250 47 HOH HOH A . G 6 HOH 89 251 48 HOH HOH A . G 6 HOH 90 252 49 HOH HOH A . G 6 HOH 91 253 50 HOH HOH A . G 6 HOH 92 254 51 HOH HOH A . G 6 HOH 93 255 52 HOH HOH A . G 6 HOH 94 256 53 HOH HOH A . G 6 HOH 95 257 54 HOH HOH A . G 6 HOH 96 258 55 HOH HOH A . G 6 HOH 97 259 56 HOH HOH A . G 6 HOH 98 260 57 HOH HOH A . G 6 HOH 99 261 58 HOH HOH A . G 6 HOH 100 262 59 HOH HOH A . G 6 HOH 101 263 60 HOH HOH A . G 6 HOH 102 264 61 HOH HOH A . G 6 HOH 103 265 62 HOH HOH A . G 6 HOH 104 266 63 HOH HOH A . G 6 HOH 105 267 64 HOH HOH A . G 6 HOH 106 268 65 HOH HOH A . G 6 HOH 107 269 66 HOH HOH A . G 6 HOH 108 270 67 HOH HOH A . G 6 HOH 109 271 68 HOH HOH A . G 6 HOH 110 272 69 HOH HOH A . G 6 HOH 111 273 70 HOH HOH A . G 6 HOH 112 274 71 HOH HOH A . G 6 HOH 113 275 72 HOH HOH A . G 6 HOH 114 276 73 HOH HOH A . G 6 HOH 115 277 74 HOH HOH A . G 6 HOH 116 278 75 HOH HOH A . G 6 HOH 117 279 76 HOH HOH A . G 6 HOH 118 280 77 HOH HOH A . G 6 HOH 119 281 78 HOH HOH A . G 6 HOH 120 282 79 HOH HOH A . G 6 HOH 121 283 80 HOH HOH A . G 6 HOH 122 284 81 HOH HOH A . G 6 HOH 123 285 82 HOH HOH A . G 6 HOH 124 286 83 HOH HOH A . G 6 HOH 125 287 84 HOH HOH A . G 6 HOH 126 288 85 HOH HOH A . G 6 HOH 127 289 86 HOH HOH A . G 6 HOH 128 290 87 HOH HOH A . G 6 HOH 129 291 88 HOH HOH A . G 6 HOH 130 292 89 HOH HOH A . G 6 HOH 131 293 90 HOH HOH A . G 6 HOH 132 294 91 HOH HOH A . G 6 HOH 133 295 92 HOH HOH A . G 6 HOH 134 296 93 HOH HOH A . G 6 HOH 135 297 94 HOH HOH A . G 6 HOH 136 298 95 HOH HOH A . G 6 HOH 137 299 96 HOH HOH A . G 6 HOH 138 300 97 HOH HOH A . G 6 HOH 139 301 98 HOH HOH A . G 6 HOH 140 302 99 HOH HOH A . G 6 HOH 141 303 100 HOH HOH A . G 6 HOH 142 304 101 HOH HOH A . G 6 HOH 143 305 102 HOH HOH A . G 6 HOH 144 306 103 HOH HOH A . G 6 HOH 145 307 104 HOH HOH A . G 6 HOH 146 308 105 HOH HOH A . G 6 HOH 147 309 106 HOH HOH A . G 6 HOH 148 310 107 HOH HOH A . G 6 HOH 149 311 108 HOH HOH A . G 6 HOH 150 312 109 HOH HOH A . G 6 HOH 151 313 110 HOH HOH A . G 6 HOH 152 314 111 HOH HOH A . G 6 HOH 153 315 112 HOH HOH A . G 6 HOH 154 316 113 HOH HOH A . G 6 HOH 155 317 114 HOH HOH A . G 6 HOH 156 318 115 HOH HOH A . G 6 HOH 157 319 116 HOH HOH A . G 6 HOH 158 320 117 HOH HOH A . G 6 HOH 159 321 118 HOH HOH A . G 6 HOH 160 322 119 HOH HOH A . G 6 HOH 161 323 120 HOH HOH A . G 6 HOH 162 324 121 HOH HOH A . G 6 HOH 163 325 122 HOH HOH A . G 6 HOH 164 326 123 HOH HOH A . G 6 HOH 165 327 124 HOH HOH A . G 6 HOH 166 328 125 HOH HOH A . G 6 HOH 167 329 126 HOH HOH A . G 6 HOH 168 330 127 HOH HOH A . G 6 HOH 169 331 128 HOH HOH A . G 6 HOH 170 332 129 HOH HOH A . G 6 HOH 171 333 130 HOH HOH A . G 6 HOH 172 334 131 HOH HOH A . G 6 HOH 173 335 132 HOH HOH A . G 6 HOH 174 336 133 HOH HOH A . G 6 HOH 175 337 134 HOH HOH A . G 6 HOH 176 338 135 HOH HOH A . G 6 HOH 177 339 136 HOH HOH A . G 6 HOH 178 340 137 HOH HOH A . G 6 HOH 179 341 138 HOH HOH A . G 6 HOH 180 342 139 HOH HOH A . G 6 HOH 181 343 140 HOH HOH A . G 6 HOH 182 344 141 HOH HOH A . G 6 HOH 183 345 142 HOH HOH A . G 6 HOH 184 346 143 HOH HOH A . G 6 HOH 185 347 144 HOH HOH A . G 6 HOH 186 348 145 HOH HOH A . G 6 HOH 187 349 146 HOH HOH A . G 6 HOH 188 350 147 HOH HOH A . G 6 HOH 189 351 148 HOH HOH A . G 6 HOH 190 352 149 HOH HOH A . G 6 HOH 191 353 150 HOH HOH A . G 6 HOH 192 354 151 HOH HOH A . G 6 HOH 193 355 152 HOH HOH A . G 6 HOH 194 356 153 HOH HOH A . G 6 HOH 195 357 154 HOH HOH A . G 6 HOH 196 358 155 HOH HOH A . G 6 HOH 197 359 156 HOH HOH A . G 6 HOH 198 360 157 HOH HOH A . G 6 HOH 199 361 158 HOH HOH A . G 6 HOH 200 362 159 HOH HOH A . G 6 HOH 201 363 160 HOH HOH A . G 6 HOH 202 364 161 HOH HOH A . G 6 HOH 203 365 162 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 58 A MSE 57 ? MET SELENOMETHIONINE 3 A MSE 150 A MSE 149 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-08-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 24.4983 _pdbx_refine_tls.origin_y 2.9987 _pdbx_refine_tls.origin_z -7.8432 _pdbx_refine_tls.T[1][1] -0.0393 _pdbx_refine_tls.T[2][2] -0.0261 _pdbx_refine_tls.T[3][3] -0.0335 _pdbx_refine_tls.T[1][2] -0.0084 _pdbx_refine_tls.T[1][3] -0.0029 _pdbx_refine_tls.T[2][3] -0.0017 _pdbx_refine_tls.L[1][1] 0.6397 _pdbx_refine_tls.L[2][2] 1.0363 _pdbx_refine_tls.L[3][3] 0.8597 _pdbx_refine_tls.L[1][2] -0.2603 _pdbx_refine_tls.L[1][3] -0.1236 _pdbx_refine_tls.L[2][3] 0.3790 _pdbx_refine_tls.S[1][1] -0.0158 _pdbx_refine_tls.S[2][2] 0.0560 _pdbx_refine_tls.S[3][3] -0.0402 _pdbx_refine_tls.S[1][2] 0.0130 _pdbx_refine_tls.S[1][3] 0.0159 _pdbx_refine_tls.S[2][3] -0.0114 _pdbx_refine_tls.S[2][1] -0.0070 _pdbx_refine_tls.S[3][1] 0.0504 _pdbx_refine_tls.S[3][2] -0.0258 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 157 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHARP . ? ? ? ? phasing ? ? ? 8 # _pdbx_entry_details.entry_id 3IMK _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ALA _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 6 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -112.36 _pdbx_validate_torsion.psi 74.82 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 2 ? CG ? A ASP 3 CG 2 1 Y 1 A ASP 2 ? OD1 ? A ASP 3 OD1 3 1 Y 1 A ASP 2 ? OD2 ? A ASP 3 OD2 4 1 Y 1 A LYS 4 ? CD ? A LYS 5 CD 5 1 Y 1 A LYS 4 ? CE ? A LYS 5 CE 6 1 Y 1 A LYS 4 ? NZ ? A LYS 5 NZ 7 1 Y 1 A LYS 85 ? CD ? A LYS 86 CD 8 1 Y 1 A LYS 85 ? CE ? A LYS 86 CE 9 1 Y 1 A LYS 85 ? NZ ? A LYS 86 NZ 10 1 Y 1 A LYS 99 ? CE ? A LYS 100 CE 11 1 Y 1 A LYS 99 ? NZ ? A LYS 100 NZ # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' MES 4 'TETRAETHYLENE GLYCOL' PG4 5 '1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE' PG6 6 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #