HEADER LYASE 10-AUG-09 3IMN TITLE CRYSTAL STRUCTURE OF HEPARIN LYASE I FROM BACTEROIDES THETAIOTAOMICRON COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPARIN LYASE I; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 818; SOURCE 4 STRAIN: WAL 2926; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22 KEYWDS JELLY ROLL, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.H.HAN,K.S.RYU,Y.H.JEON REVDAT 4 20-MAR-24 3IMN 1 REMARK REVDAT 3 04-OCT-17 3IMN 1 REMARK REVDAT 2 08-DEC-09 3IMN 1 JRNL REVDAT 1 29-SEP-09 3IMN 0 JRNL AUTH Y.H.HAN,M.L.GARRON,H.Y.KIM,W.S.KIM,Z.ZHANG,K.S.RYU,D.SHAYA, JRNL AUTH 2 Z.XIAO,C.CHEONG,Y.S.KIM,R.J.LINHARDT,Y.H.JEON,M.CYGLER JRNL TITL STRUCTURAL SNAPSHOTS OF HEPARIN DEPOLYMERIZATION BY HEPARIN JRNL TITL 2 LYASE I JRNL REF J.BIOL.CHEM. V. 284 34019 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19801541 JRNL DOI 10.1074/JBC.M109.025338 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 40417 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2052 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2099 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2973 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 259 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.36000 REMARK 3 B22 (A**2) : -1.33000 REMARK 3 B33 (A**2) : -0.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.51000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.380 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3072 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4157 ; 2.087 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 371 ; 7.091 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;36.437 ;24.414 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 527 ;15.722 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;20.771 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 430 ; 0.191 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2343 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1848 ; 1.402 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2985 ; 2.297 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1224 ; 3.336 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1172 ; 5.210 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3IMN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054601. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-06; 28-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : PAL/PLS; PAL/PLS REMARK 200 BEAMLINE : 4A; 6B REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000; 0.97905, 0.97924, REMARK 200 0.97136 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210; BRUKER AXIOM REMARK 200 200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40417 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 58.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 55.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.17800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA CITRATE PH 5.5, 2.0M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.46050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.35600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.46050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.35600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 THR A 3 REMARK 465 ALA A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 226 O1 SO4 A 382 1.93 REMARK 500 CE2 TYR A 273 O HOH A 635 2.07 REMARK 500 NZ LYS A 306 OE2 GLU A 347 2.12 REMARK 500 CD2 LEU A 377 O HOH A 613 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 61 CE2 TYR A 61 CD2 0.094 REMARK 500 CYS A 256 CB CYS A 256 SG -0.099 REMARK 500 GLU A 375 CB GLU A 375 CG -0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 8 102.19 -170.58 REMARK 500 LYS A 185 -104.94 47.26 REMARK 500 ASP A 204 158.54 -20.09 REMARK 500 ASN A 206 44.07 -98.87 REMARK 500 LEU A 216 130.80 -32.78 REMARK 500 SER A 271 -166.30 -120.29 REMARK 500 TYR A 280 142.83 -170.21 REMARK 500 LYS A 306 -124.79 56.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 385 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 222 OE1 REMARK 620 2 GLU A 222 OE2 49.1 REMARK 620 3 TRP A 248 O 115.7 80.0 REMARK 620 4 ASN A 345 O 149.4 147.0 94.9 REMARK 620 5 ASP A 346 OD1 70.8 99.2 168.5 79.5 REMARK 620 6 HOH A 621 O 107.7 71.2 83.7 75.9 85.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 379 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 380 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 381 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 382 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 383 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 384 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 385 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3IN9 RELATED DB: PDB REMARK 900 HEPARIN LYASE I COMPLEXED WITH DISACCHARIDE HEPARIN REMARK 900 RELATED ID: 3INA RELATED DB: PDB REMARK 900 HEPARIN LYASE I H151A MUTANT COMPLEXED WITH A DODECASACCHARIDE REMARK 900 HEPARIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE IS NO UNP REFERENCE SEQUENCE DATABASE FOR THIS REMARK 999 PROTEIN AT THE TIME OF PROCESSING. REMARK 999 THE TWO RESIDUES AT THE C-TERMINAL OF THE SEQUENCE, LEU 377 REMARK 999 AND GLU 378, ARE EXPRESSION TAGS. DBREF 3IMN A 1 378 PDB 3IMN 3IMN 1 378 SEQRES 1 A 378 MET LEU THR ALA GLN THR LYS ASN THR GLN THR LEU MET SEQRES 2 A 378 PRO LEU THR GLU ARG VAL ASN VAL GLN ALA ASP SER ALA SEQRES 3 A 378 ARG ILE ASN GLN ILE ILE ASP GLY CYS TRP VAL ALA VAL SEQRES 4 A 378 GLY THR ASN LYS PRO HIS ALA ILE GLN ARG ASP PHE THR SEQRES 5 A 378 ASN LEU PHE ASP GLY LYS PRO SER TYR ARG PHE GLU LEU SEQRES 6 A 378 LYS THR GLU ASP ASN THR LEU GLU GLY TYR ALA LYS GLY SEQRES 7 A 378 GLU THR LYS GLY ARG ALA GLU PHE SER TYR CYS TYR ALA SEQRES 8 A 378 THR SER ASP ASP PHE LYS GLY LEU PRO ALA ASP VAL TYR SEQRES 9 A 378 GLN LYS ALA GLN ILE THR LYS THR VAL TYR HIS HIS GLY SEQRES 10 A 378 LYS GLY ALA CYS PRO GLN GLY SER SER ARG ASP TYR GLU SEQRES 11 A 378 PHE SER VAL TYR ILE PRO SER SER LEU ASP SER ASN VAL SEQRES 12 A 378 SER THR ILE PHE ALA GLN TRP HIS GLY MET PRO ASP ARG SEQRES 13 A 378 THR LEU VAL GLN THR PRO GLN GLY GLU VAL LYS LYS LEU SEQRES 14 A 378 THR VAL ASP GLU PHE VAL GLU LEU GLU LYS THR THR PHE SEQRES 15 A 378 PHE LYS LYS ASN ALA GLY HIS GLU LYS VAL VAL ARG LEU SEQRES 16 A 378 ASP LYS GLN GLY ASN PRO MET LYS ASP LYS ASN GLY LYS SEQRES 17 A 378 PRO VAL TYR LYS ALA GLY LYS LEU ASN GLY TRP LEU VAL SEQRES 18 A 378 GLU GLN GLY GLY TYR PRO PRO LEU ALA PHE GLY PHE SER SEQRES 19 A 378 GLY GLY LEU PHE TYR ILE LYS ALA ASN SER ASP ARG LYS SEQRES 20 A 378 TRP LEU THR ASP LYS ASP ASP ARG CYS ASN ALA ASN PRO SEQRES 21 A 378 GLY LYS THR PRO VAL MET LYS PRO LEU THR SER GLU TYR SEQRES 22 A 378 LYS ALA SER THR ILE ALA TYR LYS LEU PRO PHE ALA ASP SEQRES 23 A 378 PHE PRO LYS ASP CYS TRP ILE THR PHE ARG VAL HIS ILE SEQRES 24 A 378 ASP TRP THR VAL TYR GLY LYS GLU ALA GLU THR ILE VAL SEQRES 25 A 378 LYS PRO GLY MET LEU ASP VAL ARG MET ASP TYR GLN GLU SEQRES 26 A 378 GLN GLY LYS LYS VAL SER LYS HIS ILE VAL ASN ASN GLU SEQRES 27 A 378 LYS ILE LEU ILE GLY ARG ASN ASP GLU ASP GLY TYR TYR SEQRES 28 A 378 PHE LYS PHE GLY ILE TYR ARG VAL GLY ASP SER THR VAL SEQRES 29 A 378 PRO VAL CYS TYR ASN LEU ALA GLY TYR SER GLU ARG LEU SEQRES 30 A 378 GLU HET SO4 A 379 5 HET SO4 A 380 5 HET SO4 A 381 5 HET SO4 A 382 5 HET SO4 A 383 5 HET SO4 A 384 5 HET CA A 385 1 HETNAM SO4 SULFATE ION HETNAM CA CALCIUM ION FORMUL 2 SO4 6(O4 S 2-) FORMUL 8 CA CA 2+ FORMUL 9 HOH *259(H2 O) HELIX 1 1 ARG A 27 ILE A 31 5 5 HELIX 2 2 LYS A 43 HIS A 45 5 3 HELIX 3 3 THR A 92 PHE A 96 5 5 HELIX 4 4 ALA A 101 THR A 110 1 10 HELIX 5 5 THR A 112 GLY A 117 5 6 HELIX 6 6 THR A 170 THR A 180 1 11 HELIX 7 7 ALA A 285 PHE A 287 5 3 HELIX 8 8 LYS A 306 GLU A 309 5 4 SHEET 1 A 8 LEU A 12 PRO A 14 0 SHEET 2 A 8 ILE A 47 PHE A 55 -1 O ARG A 49 N MET A 13 SHEET 3 A 8 LYS A 58 LEU A 65 -1 O SER A 60 N ASP A 50 SHEET 4 A 8 VAL A 366 ARG A 376 -1 O TYR A 368 N PHE A 63 SHEET 5 A 8 SER A 126 TYR A 134 -1 N SER A 132 O ALA A 371 SHEET 6 A 8 TRP A 292 ASP A 300 -1 O ILE A 293 N VAL A 133 SHEET 7 A 8 GLY A 315 GLU A 325 -1 O ASP A 318 N HIS A 298 SHEET 8 A 8 LYS A 328 ILE A 340 -1 O LYS A 332 N MET A 321 SHEET 1 B 8 VAL A 37 GLY A 40 0 SHEET 2 B 8 THR A 80 SER A 87 -1 O GLU A 85 N VAL A 39 SHEET 3 B 8 TYR A 350 ARG A 358 -1 O PHE A 354 N PHE A 86 SHEET 4 B 8 THR A 145 HIS A 151 -1 N HIS A 151 O TYR A 351 SHEET 5 B 8 LEU A 229 SER A 234 -1 O PHE A 231 N ALA A 148 SHEET 6 B 8 LEU A 237 ASP A 245 -1 O TYR A 239 N GLY A 232 SHEET 7 B 8 LYS A 274 PRO A 283 -1 O LEU A 282 N PHE A 238 SHEET 8 B 8 LEU A 269 THR A 270 -1 N LEU A 269 O SER A 276 SHEET 1 C 3 VAL A 37 GLY A 40 0 SHEET 2 C 3 THR A 80 SER A 87 -1 O GLU A 85 N VAL A 39 SHEET 3 C 3 LEU A 72 GLU A 73 -1 N LEU A 72 O LYS A 81 SHEET 1 D 6 ALA A 120 CYS A 121 0 SHEET 2 D 6 TYR A 350 ARG A 358 -1 O TYR A 350 N CYS A 121 SHEET 3 D 6 THR A 145 HIS A 151 -1 N HIS A 151 O TYR A 351 SHEET 4 D 6 LEU A 229 SER A 234 -1 O PHE A 231 N ALA A 148 SHEET 5 D 6 LEU A 237 ASP A 245 -1 O TYR A 239 N GLY A 232 SHEET 6 D 6 GLY A 343 ARG A 344 1 O GLY A 343 N ASN A 243 SHEET 1 E 5 VAL A 166 LYS A 168 0 SHEET 2 E 5 LEU A 158 GLN A 160 -1 N VAL A 159 O LYS A 167 SHEET 3 E 5 TYR A 211 VAL A 221 -1 O LEU A 220 N GLN A 160 SHEET 4 E 5 ALA A 187 VAL A 193 -1 N GLY A 188 O TRP A 219 SHEET 5 E 5 THR A 181 LYS A 184 -1 N PHE A 182 O HIS A 189 SHEET 1 F 2 VAL A 303 TYR A 304 0 SHEET 2 F 2 ILE A 311 LYS A 313 -1 O LYS A 313 N VAL A 303 LINK OE1 GLU A 222 CA CA A 385 1555 1555 2.78 LINK OE2 GLU A 222 CA CA A 385 1555 1555 2.52 LINK O TRP A 248 CA CA A 385 1555 1555 2.38 LINK O ASN A 345 CA CA A 385 1555 1555 2.62 LINK OD1 ASP A 346 CA CA A 385 1555 1555 2.39 LINK CA CA A 385 O HOH A 621 1555 1555 2.47 SITE 1 AC1 7 GLN A 22 HIS A 151 PRO A 154 ARG A 156 SITE 2 AC1 7 GLN A 223 GLY A 224 HOH A 503 SITE 1 AC2 5 ARG A 27 ILE A 28 SER A 93 HOH A 444 SITE 2 AC2 5 HOH A 622 SITE 1 AC3 4 LYS A 58 ASP A 140 SER A 141 HOH A 572 SITE 1 AC4 3 TYR A 226 ARG A 255 ASN A 257 SITE 1 AC5 4 LYS A 97 GLY A 98 PRO A 314 LYS A 339 SITE 1 AC6 2 ARG A 62 HOH A 548 SITE 1 AC7 5 GLU A 222 TRP A 248 ASN A 345 ASP A 346 SITE 2 AC7 5 HOH A 621 CRYST1 116.921 68.712 61.306 90.00 105.90 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008553 0.000000 0.002436 0.00000 SCALE2 0.000000 0.014553 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016961 0.00000