HEADER TRANSFERASE/DNA 11-AUG-09 3IN5 TITLE STRUCTURE OF HUMAN DNA POLYMERASE KAPPA INSERTING DATP OPPOSITE AN 8- TITLE 2 OXOG DNA LESION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE KAPPA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 19-526; COMPND 5 SYNONYM: DINB PROTEIN, DINP; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*GP*G*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*(DOC))-3'); COMPND 10 CHAIN: P, Q; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: DNA PRIMER STRAND; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*C*CP*TP*AP*(8OG) COMPND 15 P*GP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'); COMPND 16 CHAIN: T, U; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: DNA TEMPLATE STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DINB1, POLK; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BJ5464; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES KEYWDS ALTERNATIVE SPLICING, DNA DAMAGE, DNA REPAIR, DNA REPLICATION, DNA KEYWDS 2 SYNTHESIS, DNA-BINDING, DNA-DIRECTED DNA POLYMERASE, MAGNESIUM, KEYWDS 3 METAL-BINDING, MUTATOR PROTEIN, NUCLEOTIDYLTRANSFERASE, NUCLEUS, KEYWDS 4 PHOSPHOPROTEIN, POLYMORPHISM, SCHIFF BASE, TRANSFERASE, ZINC, ZINC- KEYWDS 5 FINGER, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.D.SILVERSTEIN,R.VASQUEZ-DEL CARPIO,A.K.AGGARWAL REVDAT 2 06-SEP-23 3IN5 1 REMARK LINK REVDAT 1 08-SEP-09 3IN5 0 SPRSDE 08-SEP-09 3IN5 3HED JRNL AUTH R.VASQUEZ-DEL CARPIO,T.D.SILVERSTEIN,S.LONE,M.K.SWAN, JRNL AUTH 2 J.R.CHOUDHURY,R.E.JOHNSON,S.PRAKASH,L.PRAKASH,A.K.AGGARWAL JRNL TITL STRUCTURE OF HUMAN DNA POLYMERASE KAPPA INSERTING DATP JRNL TITL 2 OPPOSITE AN 8-OXOG DNA LESION JRNL REF PLOS ONE V. 4 E5766 2009 JRNL REFN ESSN 1932-6203 JRNL PMID 19492058 JRNL DOI 10.1371/JOURNAL.PONE.0005766 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31139 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1640 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2264 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6750 REMARK 3 NUCLEIC ACID ATOMS : 1056 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.18000 REMARK 3 B22 (A**2) : 1.33000 REMARK 3 B33 (A**2) : -4.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.449 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.326 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.790 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.907 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.858 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8111 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5150 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11192 ; 1.567 ; 2.144 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12639 ; 0.964 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 873 ; 5.589 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 300 ;37.408 ;24.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1241 ;19.639 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;21.503 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1278 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8203 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1447 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4369 ; 0.514 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1755 ; 0.059 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7006 ; 0.979 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3742 ; 1.196 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4185 ; 2.131 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IN5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054619. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.100 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34388 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12100 REMARK 200 FOR THE DATA SET : 26.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2OH2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 5000 MONOMETHYL ETHER, 0.2M REMARK 280 POTASSIUM ACETATE, 0.1M SODIUM CHLORIDE, 0.1M SODIUM CACODYLATE, REMARK 280 PH 6.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.64650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 108.64650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.42300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.24000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 58.42300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.24000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 108.64650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 58.42300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.24000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 108.64650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 58.42300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.24000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Q, U REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 19 REMARK 465 GLY A 20 REMARK 465 LEU A 21 REMARK 465 ASN A 22 REMARK 465 ASP A 23 REMARK 465 ASN A 24 REMARK 465 MET A 225 REMARK 465 GLY A 226 REMARK 465 SER A 227 REMARK 465 SER A 228 REMARK 465 VAL A 229 REMARK 465 GLU A 230 REMARK 465 ASN A 231 REMARK 465 ASP A 232 REMARK 465 ASN A 233 REMARK 465 PRO A 234 REMARK 465 GLY A 235 REMARK 465 LYS A 236 REMARK 465 GLU A 237 REMARK 465 VAL A 238 REMARK 465 ASN A 239 REMARK 465 LYS A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLU A 243 REMARK 465 HIS A 244 REMARK 465 GLU A 245 REMARK 465 ARG A 246 REMARK 465 SER A 247 REMARK 465 ILE A 248 REMARK 465 SER A 249 REMARK 465 PRO A 250 REMARK 465 LEU A 251 REMARK 465 LEU A 252 REMARK 465 PHE A 253 REMARK 465 GLU A 254 REMARK 465 GLU A 255 REMARK 465 SER A 256 REMARK 465 PRO A 257 REMARK 465 SER A 258 REMARK 465 ASP A 259 REMARK 465 VAL A 260 REMARK 465 GLN A 261 REMARK 465 PRO A 262 REMARK 465 PRO A 263 REMARK 465 GLY A 264 REMARK 465 ASP A 265 REMARK 465 PRO A 266 REMARK 465 PHE A 267 REMARK 465 GLN A 268 REMARK 465 VAL A 269 REMARK 465 ASN A 270 REMARK 465 PHE A 271 REMARK 465 GLU A 272 REMARK 465 GLU A 273 REMARK 465 GLN A 274 REMARK 465 ASN A 275 REMARK 465 ASN A 276 REMARK 465 PRO A 277 REMARK 465 GLN A 278 REMARK 465 ILE A 279 REMARK 465 LEU A 280 REMARK 465 GLU A 519 REMARK 465 GLU A 520 REMARK 465 ASP A 521 REMARK 465 ARG A 522 REMARK 465 LYS A 523 REMARK 465 HIS A 524 REMARK 465 GLN A 525 REMARK 465 GLN A 526 REMARK 465 MET B 19 REMARK 465 GLY B 20 REMARK 465 LEU B 21 REMARK 465 LYS B 224 REMARK 465 MET B 225 REMARK 465 GLY B 226 REMARK 465 SER B 227 REMARK 465 SER B 228 REMARK 465 VAL B 229 REMARK 465 GLU B 230 REMARK 465 ASN B 231 REMARK 465 ASP B 232 REMARK 465 ASN B 233 REMARK 465 PRO B 234 REMARK 465 GLY B 235 REMARK 465 LYS B 236 REMARK 465 GLU B 237 REMARK 465 VAL B 238 REMARK 465 ASN B 239 REMARK 465 LYS B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 465 GLU B 243 REMARK 465 HIS B 244 REMARK 465 GLU B 245 REMARK 465 ARG B 246 REMARK 465 SER B 247 REMARK 465 ILE B 248 REMARK 465 SER B 249 REMARK 465 PRO B 250 REMARK 465 LEU B 251 REMARK 465 LEU B 252 REMARK 465 PHE B 253 REMARK 465 GLU B 254 REMARK 465 GLU B 255 REMARK 465 SER B 256 REMARK 465 PRO B 257 REMARK 465 SER B 258 REMARK 465 ASP B 259 REMARK 465 VAL B 260 REMARK 465 GLN B 261 REMARK 465 PRO B 262 REMARK 465 PRO B 263 REMARK 465 GLY B 264 REMARK 465 ASP B 265 REMARK 465 PRO B 266 REMARK 465 PHE B 267 REMARK 465 GLN B 268 REMARK 465 VAL B 269 REMARK 465 ASN B 270 REMARK 465 PHE B 271 REMARK 465 GLU B 272 REMARK 465 GLU B 273 REMARK 465 GLN B 274 REMARK 465 ASN B 275 REMARK 465 ASN B 276 REMARK 465 PRO B 277 REMARK 465 GLN B 278 REMARK 465 ILE B 279 REMARK 465 LEU B 280 REMARK 465 GLN B 281 REMARK 465 ASN B 282 REMARK 465 SER B 283 REMARK 465 GLU B 519 REMARK 465 GLU B 520 REMARK 465 ASP B 521 REMARK 465 ARG B 522 REMARK 465 LYS B 523 REMARK 465 HIS B 524 REMARK 465 GLN B 525 REMARK 465 GLN B 526 REMARK 465 DG P 1 REMARK 465 DG P 2 REMARK 465 DC T 1 REMARK 465 DC T 17 REMARK 465 DC T 18 REMARK 465 DG Q 1 REMARK 465 DC U 1 REMARK 465 DC U 2 REMARK 465 DT U 3 REMARK 465 DC U 18 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 MET A 28 CG SD CE REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 GLN A 59 CG CD OE1 NE2 REMARK 470 ARG A 88 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 ARG A 145 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 149 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 216 CG CD OE1 OE2 REMARK 470 PHE A 222 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 LYS A 359 CG CD CE NZ REMARK 470 SER A 388 OG REMARK 470 ARG A 409 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 412 CG CD OE1 OE2 REMARK 470 LYS A 414 CG CD CE NZ REMARK 470 ASP B 23 CG OD1 OD2 REMARK 470 ASN B 24 CG OD1 ND2 REMARK 470 GLU B 34 CG CD OE1 OE2 REMARK 470 LYS B 35 CG CD CE NZ REMARK 470 LYS B 38 CG CD CE NZ REMARK 470 GLU B 42 CG CD OE1 OE2 REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 GLN B 59 CG CD OE1 NE2 REMARK 470 ARG B 88 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 115 CG1 CG2 REMARK 470 GLU B 122 CG CD OE1 OE2 REMARK 470 LYS B 124 CG CD CE NZ REMARK 470 ASP B 125 CG OD1 OD2 REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 ARG B 145 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 158 CG CD CE NZ REMARK 470 GLN B 163 CG CD OE1 NE2 REMARK 470 ARG B 175 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 179 CG CD CE NZ REMARK 470 LYS B 182 CG CD CE NZ REMARK 470 LYS B 206 CG CD CE NZ REMARK 470 ASP B 217 CG OD1 OD2 REMARK 470 ARG B 220 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 222 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE B 223 CG1 CG2 CD1 REMARK 470 VAL B 284 CG1 CG2 REMARK 470 VAL B 285 CG1 CG2 REMARK 470 LYS B 359 CG CD CE NZ REMARK 470 ARG B 409 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 410 CG OD1 OD2 REMARK 470 GLU B 412 CG CD OE1 OE2 REMARK 470 GLU B 429 CG CD OE1 OE2 REMARK 470 LYS B 448 CG CD CE NZ REMARK 470 ARG B 450 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 489 CG CD CE NZ REMARK 470 PHE B 500 CG CD1 CD2 CE1 CE2 CZ REMARK 470 DG P 3 P OP1 OP2 REMARK 470 DC T 2 P OP1 OP2 REMARK 470 DG Q 2 P OP1 OP2 REMARK 470 DA U 4 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 141 O3G ATP B 2 2.09 REMARK 500 O TRP B 214 NH2 ARG B 219 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 389 CD GLU B 389 OE2 0.086 REMARK 500 DT P 12 O3' DT P 12 C3' -0.061 REMARK 500 DG T 6 O3' DG T 6 C3' -0.038 REMARK 500 DA Q 6 O3' DA Q 6 C3' -0.043 REMARK 500 DC Q 11 O3' DC Q 11 C3' -0.049 REMARK 500 DT Q 12 O3' DT Q 12 C3' -0.057 REMARK 500 DA U 4 C5' DA U 4 C4' 0.052 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 211 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG P 3 C3' - O3' - P ANGL. DEV. = 8.8 DEGREES REMARK 500 DG P 4 O4' - C1' - N9 ANGL. DEV. = 5.6 DEGREES REMARK 500 DG P 5 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DA P 6 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DG P 8 O4' - C1' - N9 ANGL. DEV. = -4.4 DEGREES REMARK 500 DC P 11 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT P 12 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC T 2 C4' - C3' - C2' ANGL. DEV. = -4.3 DEGREES REMARK 500 DC T 2 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES REMARK 500 DC T 2 O4' - C1' - C2' ANGL. DEV. = -5.6 DEGREES REMARK 500 DC T 2 O4' - C1' - N1 ANGL. DEV. = 8.3 DEGREES REMARK 500 DC T 2 C3' - O3' - P ANGL. DEV. = 9.1 DEGREES REMARK 500 DT T 3 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DA T 4 C3' - O3' - P ANGL. DEV. = 9.6 DEGREES REMARK 500 DG T 6 O4' - C4' - C3' ANGL. DEV. = -3.4 DEGREES REMARK 500 DG T 6 O4' - C1' - N9 ANGL. DEV. = -5.4 DEGREES REMARK 500 DA T 7 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT T 9 N3 - C4 - O4 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC T 10 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT T 12 O4' - C1' - N1 ANGL. DEV. = 7.6 DEGREES REMARK 500 DT T 12 N3 - C4 - O4 ANGL. DEV. = 4.4 DEGREES REMARK 500 DC T 14 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC T 15 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 DC T 16 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG Q 2 C3' - O3' - P ANGL. DEV. = 10.8 DEGREES REMARK 500 DA Q 6 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DA Q 6 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT Q 12 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DA U 4 O4' - C4' - C3' ANGL. DEV. = -6.9 DEGREES REMARK 500 DA U 4 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA U 7 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG U 8 O4' - C1' - N9 ANGL. DEV. = 7.0 DEGREES REMARK 500 DT U 12 O4' - C1' - N1 ANGL. DEV. = 7.6 DEGREES REMARK 500 DT U 13 N3 - C4 - O4 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 29 -165.89 -108.80 REMARK 500 LYS A 45 -72.52 -33.15 REMARK 500 GLN A 73 47.13 -108.73 REMARK 500 ALA A 110 58.04 32.66 REMARK 500 MET A 135 134.05 177.16 REMARK 500 ALA A 151 -2.27 59.40 REMARK 500 PRO A 190 -17.73 -46.70 REMARK 500 SER A 196 -175.97 -171.75 REMARK 500 SER A 283 148.70 -177.53 REMARK 500 THR A 306 -13.53 91.41 REMARK 500 PHE A 345 -72.18 -71.20 REMARK 500 ILE A 346 -45.39 -29.30 REMARK 500 ALA A 381 -73.07 -53.62 REMARK 500 ASP A 410 -149.62 -71.23 REMARK 500 GLU A 412 124.90 73.56 REMARK 500 GLU A 424 140.50 -37.83 REMARK 500 LEU A 438 -70.21 -68.30 REMARK 500 ARG A 450 56.65 39.29 REMARK 500 ASN A 462 173.63 -53.32 REMARK 500 VAL A 474 -88.17 -85.05 REMARK 500 SER A 475 -10.72 158.72 REMARK 500 SER A 476 -106.72 -83.89 REMARK 500 VAL A 477 -89.82 -155.23 REMARK 500 VAL A 478 135.98 100.70 REMARK 500 SER A 479 -53.55 -147.27 REMARK 500 ALA B 26 -49.05 84.76 REMARK 500 GLU B 29 -102.97 -35.26 REMARK 500 LYS B 45 -105.08 14.50 REMARK 500 PHE B 111 -92.39 -35.98 REMARK 500 MET B 135 146.67 -171.61 REMARK 500 CYS B 161 77.58 -168.44 REMARK 500 GLN B 163 40.82 -77.56 REMARK 500 ILE B 204 30.62 -88.06 REMARK 500 ARG B 211 -32.93 -38.95 REMARK 500 TRP B 214 126.58 -38.43 REMARK 500 LYS B 218 5.24 -67.11 REMARK 500 PHE B 222 -100.62 -84.38 REMARK 500 THR B 305 -9.30 -146.60 REMARK 500 THR B 306 -19.46 76.20 REMARK 500 PRO B 315 -18.56 -47.04 REMARK 500 ASN B 330 57.54 70.22 REMARK 500 ARG B 409 82.57 -61.10 REMARK 500 ASP B 410 113.84 -179.16 REMARK 500 ASN B 462 167.19 -48.67 REMARK 500 SER B 476 -86.47 -87.78 REMARK 500 VAL B 477 153.31 158.91 REMARK 500 SER B 479 -11.09 -153.26 REMARK 500 PHE B 500 136.93 -37.03 REMARK 500 SER B 515 78.97 57.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ATP A 1 REMARK 610 ATP B 2 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 2 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 1 O1B REMARK 620 2 ATP A 1 O1A 76.7 REMARK 620 3 ASP A 107 OD1 160.3 103.7 REMARK 620 4 MET A 108 O 83.4 158.8 92.6 REMARK 620 5 ASP A 198 OD2 96.6 93.0 103.1 96.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP B 2 O1G REMARK 620 2 ATP B 2 O2B 90.7 REMARK 620 3 ATP B 2 O1A 110.2 96.7 REMARK 620 4 ASP B 107 OD1 88.5 159.9 102.5 REMARK 620 5 MET B 108 O 82.1 83.9 167.7 76.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T94 RELATED DB: PDB REMARK 900 HUMAN POLYMERASE KAPPA APO-ENZYME REMARK 900 RELATED ID: 2OH2 RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF HUMAN POLYMERASE KAPPA DBREF 3IN5 A 19 526 UNP Q9UBT6 POLK_HUMAN 19 526 DBREF 3IN5 B 19 526 UNP Q9UBT6 POLK_HUMAN 19 526 DBREF 3IN5 P 1 13 PDB 3IN5 3IN5 1 13 DBREF 3IN5 Q 1 13 PDB 3IN5 3IN5 1 13 DBREF 3IN5 T 1 18 PDB 3IN5 3IN5 1 18 DBREF 3IN5 U 1 18 PDB 3IN5 3IN5 1 18 SEQRES 1 A 508 MET GLY LEU ASN ASP ASN LYS ALA GLY MET GLU GLY LEU SEQRES 2 A 508 ASP LYS GLU LYS ILE ASN LYS ILE ILE MET GLU ALA THR SEQRES 3 A 508 LYS GLY SER ARG PHE TYR GLY ASN GLU LEU LYS LYS GLU SEQRES 4 A 508 LYS GLN VAL ASN GLN ARG ILE GLU ASN MET MET GLN GLN SEQRES 5 A 508 LYS ALA GLN ILE THR SER GLN GLN LEU ARG LYS ALA GLN SEQRES 6 A 508 LEU GLN VAL ASP ARG PHE ALA MET GLU LEU GLU GLN SER SEQRES 7 A 508 ARG ASN LEU SER ASN THR ILE VAL HIS ILE ASP MET ASP SEQRES 8 A 508 ALA PHE TYR ALA ALA VAL GLU MET ARG ASP ASN PRO GLU SEQRES 9 A 508 LEU LYS ASP LYS PRO ILE ALA VAL GLY SER MET SER MET SEQRES 10 A 508 LEU SER THR SER ASN TYR HIS ALA ARG ARG PHE GLY VAL SEQRES 11 A 508 ARG ALA ALA MET PRO GLY PHE ILE ALA LYS ARG LEU CYS SEQRES 12 A 508 PRO GLN LEU ILE ILE VAL PRO PRO ASN PHE ASP LYS TYR SEQRES 13 A 508 ARG ALA VAL SER LYS GLU VAL LYS GLU ILE LEU ALA ASP SEQRES 14 A 508 TYR ASP PRO ASN PHE MET ALA MET SER LEU ASP GLU ALA SEQRES 15 A 508 TYR LEU ASN ILE THR LYS HIS LEU GLU GLU ARG GLN ASN SEQRES 16 A 508 TRP PRO GLU ASP LYS ARG ARG TYR PHE ILE LYS MET GLY SEQRES 17 A 508 SER SER VAL GLU ASN ASP ASN PRO GLY LYS GLU VAL ASN SEQRES 18 A 508 LYS LEU SER GLU HIS GLU ARG SER ILE SER PRO LEU LEU SEQRES 19 A 508 PHE GLU GLU SER PRO SER ASP VAL GLN PRO PRO GLY ASP SEQRES 20 A 508 PRO PHE GLN VAL ASN PHE GLU GLU GLN ASN ASN PRO GLN SEQRES 21 A 508 ILE LEU GLN ASN SER VAL VAL PHE GLY THR SER ALA GLN SEQRES 22 A 508 GLU VAL VAL LYS GLU ILE ARG PHE ARG ILE GLU GLN LYS SEQRES 23 A 508 THR THR LEU THR ALA SER ALA GLY ILE ALA PRO ASN THR SEQRES 24 A 508 MET LEU ALA LYS VAL CYS SER ASP LYS ASN LYS PRO ASN SEQRES 25 A 508 GLY GLN TYR GLN ILE LEU PRO ASN ARG GLN ALA VAL MET SEQRES 26 A 508 ASP PHE ILE LYS ASP LEU PRO ILE ARG LYS VAL SER GLY SEQRES 27 A 508 ILE GLY LYS VAL THR GLU LYS MET LEU LYS ALA LEU GLY SEQRES 28 A 508 ILE ILE THR CYS THR GLU LEU TYR GLN GLN ARG ALA LEU SEQRES 29 A 508 LEU SER LEU LEU PHE SER GLU THR SER TRP HIS TYR PHE SEQRES 30 A 508 LEU HIS ILE SER LEU GLY LEU GLY SER THR HIS LEU THR SEQRES 31 A 508 ARG ASP GLY GLU ARG LYS SER MET SER VAL GLU ARG THR SEQRES 32 A 508 PHE SER GLU ILE ASN LYS ALA GLU GLU GLN TYR SER LEU SEQRES 33 A 508 CYS GLN GLU LEU CYS SER GLU LEU ALA GLN ASP LEU GLN SEQRES 34 A 508 LYS GLU ARG LEU LYS GLY ARG THR VAL THR ILE LYS LEU SEQRES 35 A 508 LYS ASN VAL ASN PHE GLU VAL LYS THR ARG ALA SER THR SEQRES 36 A 508 VAL SER SER VAL VAL SER THR ALA GLU GLU ILE PHE ALA SEQRES 37 A 508 ILE ALA LYS GLU LEU LEU LYS THR GLU ILE ASP ALA ASP SEQRES 38 A 508 PHE PRO HIS PRO LEU ARG LEU ARG LEU MET GLY VAL ARG SEQRES 39 A 508 ILE SER SER PHE PRO ASN GLU GLU ASP ARG LYS HIS GLN SEQRES 40 A 508 GLN SEQRES 1 B 508 MET GLY LEU ASN ASP ASN LYS ALA GLY MET GLU GLY LEU SEQRES 2 B 508 ASP LYS GLU LYS ILE ASN LYS ILE ILE MET GLU ALA THR SEQRES 3 B 508 LYS GLY SER ARG PHE TYR GLY ASN GLU LEU LYS LYS GLU SEQRES 4 B 508 LYS GLN VAL ASN GLN ARG ILE GLU ASN MET MET GLN GLN SEQRES 5 B 508 LYS ALA GLN ILE THR SER GLN GLN LEU ARG LYS ALA GLN SEQRES 6 B 508 LEU GLN VAL ASP ARG PHE ALA MET GLU LEU GLU GLN SER SEQRES 7 B 508 ARG ASN LEU SER ASN THR ILE VAL HIS ILE ASP MET ASP SEQRES 8 B 508 ALA PHE TYR ALA ALA VAL GLU MET ARG ASP ASN PRO GLU SEQRES 9 B 508 LEU LYS ASP LYS PRO ILE ALA VAL GLY SER MET SER MET SEQRES 10 B 508 LEU SER THR SER ASN TYR HIS ALA ARG ARG PHE GLY VAL SEQRES 11 B 508 ARG ALA ALA MET PRO GLY PHE ILE ALA LYS ARG LEU CYS SEQRES 12 B 508 PRO GLN LEU ILE ILE VAL PRO PRO ASN PHE ASP LYS TYR SEQRES 13 B 508 ARG ALA VAL SER LYS GLU VAL LYS GLU ILE LEU ALA ASP SEQRES 14 B 508 TYR ASP PRO ASN PHE MET ALA MET SER LEU ASP GLU ALA SEQRES 15 B 508 TYR LEU ASN ILE THR LYS HIS LEU GLU GLU ARG GLN ASN SEQRES 16 B 508 TRP PRO GLU ASP LYS ARG ARG TYR PHE ILE LYS MET GLY SEQRES 17 B 508 SER SER VAL GLU ASN ASP ASN PRO GLY LYS GLU VAL ASN SEQRES 18 B 508 LYS LEU SER GLU HIS GLU ARG SER ILE SER PRO LEU LEU SEQRES 19 B 508 PHE GLU GLU SER PRO SER ASP VAL GLN PRO PRO GLY ASP SEQRES 20 B 508 PRO PHE GLN VAL ASN PHE GLU GLU GLN ASN ASN PRO GLN SEQRES 21 B 508 ILE LEU GLN ASN SER VAL VAL PHE GLY THR SER ALA GLN SEQRES 22 B 508 GLU VAL VAL LYS GLU ILE ARG PHE ARG ILE GLU GLN LYS SEQRES 23 B 508 THR THR LEU THR ALA SER ALA GLY ILE ALA PRO ASN THR SEQRES 24 B 508 MET LEU ALA LYS VAL CYS SER ASP LYS ASN LYS PRO ASN SEQRES 25 B 508 GLY GLN TYR GLN ILE LEU PRO ASN ARG GLN ALA VAL MET SEQRES 26 B 508 ASP PHE ILE LYS ASP LEU PRO ILE ARG LYS VAL SER GLY SEQRES 27 B 508 ILE GLY LYS VAL THR GLU LYS MET LEU LYS ALA LEU GLY SEQRES 28 B 508 ILE ILE THR CYS THR GLU LEU TYR GLN GLN ARG ALA LEU SEQRES 29 B 508 LEU SER LEU LEU PHE SER GLU THR SER TRP HIS TYR PHE SEQRES 30 B 508 LEU HIS ILE SER LEU GLY LEU GLY SER THR HIS LEU THR SEQRES 31 B 508 ARG ASP GLY GLU ARG LYS SER MET SER VAL GLU ARG THR SEQRES 32 B 508 PHE SER GLU ILE ASN LYS ALA GLU GLU GLN TYR SER LEU SEQRES 33 B 508 CYS GLN GLU LEU CYS SER GLU LEU ALA GLN ASP LEU GLN SEQRES 34 B 508 LYS GLU ARG LEU LYS GLY ARG THR VAL THR ILE LYS LEU SEQRES 35 B 508 LYS ASN VAL ASN PHE GLU VAL LYS THR ARG ALA SER THR SEQRES 36 B 508 VAL SER SER VAL VAL SER THR ALA GLU GLU ILE PHE ALA SEQRES 37 B 508 ILE ALA LYS GLU LEU LEU LYS THR GLU ILE ASP ALA ASP SEQRES 38 B 508 PHE PRO HIS PRO LEU ARG LEU ARG LEU MET GLY VAL ARG SEQRES 39 B 508 ILE SER SER PHE PRO ASN GLU GLU ASP ARG LYS HIS GLN SEQRES 40 B 508 GLN SEQRES 1 P 13 DG DG DG DG DG DA DA DG DG DA DC DT DOC SEQRES 1 T 18 DC DC DT DA 8OG DG DA DG DT DC DC DT DT SEQRES 2 T 18 DC DC DC DC DC SEQRES 1 Q 13 DG DG DG DG DG DA DA DG DG DA DC DT DOC SEQRES 1 U 18 DC DC DT DA 8OG DG DA DG DT DC DC DT DT SEQRES 2 U 18 DC DC DC DC DC MODRES 3IN5 DOC P 13 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE MODRES 3IN5 8OG T 5 DG MODRES 3IN5 DOC Q 13 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE MODRES 3IN5 8OG U 5 DG HET DOC P 13 18 HET 8OG T 5 23 HET DOC Q 13 18 HET 8OG U 5 23 HET ATP A 1 30 HET MG A 2 1 HET MG A 3 1 HET ATP B 2 30 HET MG B 1 1 HET MG B 4 1 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM 8OG 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN 8OG 8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE FORMUL 3 DOC 2(C9 H14 N3 O6 P) FORMUL 4 8OG 2(C10 H14 N5 O8 P) FORMUL 7 ATP 2(C10 H16 N5 O13 P3) FORMUL 8 MG 4(MG 2+) FORMUL 13 HOH *18(H2 O) HELIX 1 1 ASP A 32 ALA A 43 1 12 HELIX 2 2 SER A 47 GLN A 73 1 27 HELIX 3 3 THR A 75 SER A 96 1 22 HELIX 4 4 ALA A 110 ASN A 120 1 11 HELIX 5 5 PRO A 121 LYS A 126 5 6 HELIX 6 6 ASN A 140 PHE A 146 1 7 HELIX 7 7 PRO A 153 CYS A 161 1 9 HELIX 8 8 ASN A 170 ASP A 189 1 20 HELIX 9 9 ILE A 204 ARG A 211 1 8 HELIX 10 10 GLN A 212 TRP A 214 5 3 HELIX 11 11 PRO A 215 LYS A 218 5 4 HELIX 12 12 SER A 289 THR A 306 1 18 HELIX 13 13 ASN A 316 ASN A 327 1 12 HELIX 14 14 ASN A 338 LYS A 347 1 10 HELIX 15 15 ASP A 348 LEU A 349 5 2 HELIX 16 16 PRO A 350 VAL A 354 5 5 HELIX 17 17 GLY A 358 LEU A 368 1 11 HELIX 18 18 THR A 372 GLN A 379 1 8 HELIX 19 19 GLN A 379 PHE A 387 1 9 HELIX 20 20 SER A 388 LEU A 400 1 13 HELIX 21 21 LYS A 427 GLU A 449 1 23 HELIX 22 22 THR A 480 ASP A 499 1 20 HELIX 23 23 ASP B 32 LYS B 45 1 14 HELIX 24 24 SER B 47 ALA B 72 1 26 HELIX 25 25 THR B 75 SER B 96 1 22 HELIX 26 26 ALA B 110 ASN B 120 1 11 HELIX 27 27 PRO B 121 LYS B 124 5 4 HELIX 28 28 ASN B 140 ARG B 145 1 6 HELIX 29 29 PRO B 153 LEU B 160 1 8 HELIX 30 30 ASN B 170 ASP B 189 1 20 HELIX 31 31 ILE B 204 GLN B 212 1 9 HELIX 32 32 GLU B 216 ARG B 220 5 5 HELIX 33 33 SER B 289 THR B 306 1 18 HELIX 34 34 ASN B 316 ASN B 327 1 12 HELIX 35 35 ASN B 338 LYS B 347 1 10 HELIX 36 36 PRO B 350 VAL B 354 5 5 HELIX 37 37 GLY B 358 ALA B 367 1 10 HELIX 38 38 THR B 372 GLN B 379 1 8 HELIX 39 39 GLN B 379 PHE B 387 1 9 HELIX 40 40 SER B 388 GLY B 401 1 14 HELIX 41 41 LYS B 427 LYS B 448 1 22 HELIX 42 42 THR B 480 ALA B 498 1 19 SHEET 1 A 5 MET A 193 ALA A 194 0 SHEET 2 A 5 GLU A 199 ASN A 203 -1 O TYR A 201 N MET A 193 SHEET 3 A 5 ILE A 103 MET A 108 -1 N VAL A 104 O LEU A 202 SHEET 4 A 5 ALA A 309 ALA A 314 -1 O SER A 310 N ASP A 107 SHEET 5 A 5 GLN A 332 GLN A 334 1 O TYR A 333 N ILE A 313 SHEET 1 B 3 MET A 135 SER A 139 0 SHEET 2 B 3 ILE A 128 SER A 132 -1 N SER A 132 O MET A 135 SHEET 3 B 3 ILE A 165 VAL A 167 1 O VAL A 167 N ALA A 129 SHEET 1 C 2 ARG A 220 TYR A 221 0 SHEET 2 C 2 VAL A 284 VAL A 285 -1 O VAL A 284 N TYR A 221 SHEET 1 D 4 SER A 415 ILE A 425 0 SHEET 2 D 4 LEU A 506 SER A 514 -1 O MET A 509 N ARG A 420 SHEET 3 D 4 THR A 455 ASN A 462 -1 N THR A 457 O ARG A 512 SHEET 4 D 4 VAL A 467 THR A 473 -1 O LYS A 468 N LEU A 460 SHEET 1 E 5 MET B 193 SER B 196 0 SHEET 2 E 5 GLU B 199 ASN B 203 -1 O GLU B 199 N MET B 195 SHEET 3 E 5 ILE B 103 MET B 108 -1 N VAL B 104 O LEU B 202 SHEET 4 E 5 ALA B 309 ALA B 314 -1 O SER B 310 N ASP B 107 SHEET 5 E 5 GLN B 332 GLN B 334 1 O TYR B 333 N ILE B 313 SHEET 1 F 3 MET B 135 SER B 139 0 SHEET 2 F 3 ILE B 128 SER B 132 -1 N VAL B 130 O SER B 137 SHEET 3 F 3 ILE B 165 VAL B 167 1 O VAL B 167 N GLY B 131 SHEET 1 G 4 SER B 415 ILE B 425 0 SHEET 2 G 4 LEU B 506 SER B 514 -1 O ARG B 507 N PHE B 422 SHEET 3 G 4 GLY B 453 ASN B 462 -1 N LYS B 461 O ARG B 507 SHEET 4 G 4 VAL B 467 LYS B 468 -1 O LYS B 468 N LEU B 460 SHEET 1 H 4 SER B 415 ILE B 425 0 SHEET 2 H 4 LEU B 506 SER B 514 -1 O ARG B 507 N PHE B 422 SHEET 3 H 4 GLY B 453 ASN B 462 -1 N LYS B 461 O ARG B 507 SHEET 4 H 4 ALA B 471 VAL B 478 -1 O VAL B 474 N ARG B 454 LINK O3' DT P 12 P DOC P 13 1555 1555 1.58 LINK O3' DA T 4 P 8OG T 5 1555 1555 1.57 LINK O3' 8OG T 5 P DG T 6 1555 1555 1.58 LINK O3' DT Q 12 P DOC Q 13 1555 1555 1.60 LINK O3' DA U 4 P 8OG U 5 1555 1555 1.59 LINK O3' 8OG U 5 P DG U 6 1555 1555 1.59 LINK O1B ATP A 1 MG MG A 2 1555 1555 2.27 LINK O1A ATP A 1 MG MG A 2 1555 1555 2.12 LINK MG MG A 2 OD1 ASP A 107 1555 1555 2.08 LINK MG MG A 2 O MET A 108 1555 1555 2.32 LINK MG MG A 2 OD2 ASP A 198 1555 1555 1.89 LINK MG MG A 3 O ILE A 357 1555 1555 2.40 LINK MG MG B 1 O1G ATP B 2 1555 1555 2.20 LINK MG MG B 1 O2B ATP B 2 1555 1555 1.75 LINK MG MG B 1 O1A ATP B 2 1555 1555 1.96 LINK MG MG B 1 OD1 ASP B 107 1555 1555 2.22 LINK MG MG B 1 O MET B 108 1555 1555 2.48 LINK MG MG B 4 OP1 DT Q 12 1555 1555 2.49 CISPEP 1 LYS A 328 PRO A 329 0 -7.19 CISPEP 2 PHE A 500 PRO A 501 0 0.33 CISPEP 3 LYS B 328 PRO B 329 0 -0.48 CISPEP 4 PHE B 500 PRO B 501 0 1.85 SITE 1 AC1 18 MG A 2 ALA A 26 ASP A 107 MET A 108 SITE 2 AC1 18 ASP A 109 ALA A 110 PHE A 111 TYR A 112 SITE 3 AC1 18 SER A 137 THR A 138 TYR A 141 ARG A 144 SITE 4 AC1 18 ASP A 198 LYS A 328 HOH A 527 DOC P 13 SITE 5 AC1 18 8OG T 5 DG T 6 SITE 1 AC2 5 ATP A 1 ASP A 107 MET A 108 ASP A 198 SITE 2 AC2 5 LYS A 328 SITE 1 AC3 4 ARG A 352 VAL A 354 ILE A 357 DT P 12 SITE 1 AC4 17 MG B 1 ALA B 26 ASP B 107 MET B 108 SITE 2 AC4 17 ALA B 110 PHE B 111 TYR B 112 SER B 137 SITE 3 AC4 17 THR B 138 TYR B 141 ARG B 144 ASP B 198 SITE 4 AC4 17 GLU B 199 LYS B 328 DOC Q 13 8OG U 5 SITE 5 AC4 17 DG U 6 SITE 1 AC5 4 ATP B 2 ASP B 107 MET B 108 ASP B 198 SITE 1 AC6 4 ARG B 352 VAL B 354 ILE B 357 DT Q 12 CRYST1 116.846 154.480 217.293 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008558 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006473 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004602 0.00000