HEADER HYDROLASE 14-AUG-09 3IOG TITLE CRYSTAL STRUCTURE OF CPHA N220G MUTANT WITH INHIBITOR 18 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROMONAS HYDROPHILA; SOURCE 3 ORGANISM_TAXID: 644; SOURCE 4 GENE: CPHA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYS S; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET9A-CPHA KEYWDS HYDROLASE, ANTIBIOTIC RESISTANCE, METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR H.DELBRUCK,C.BEBRONE,K.M.V.HOFFMANN REVDAT 3 01-NOV-23 3IOG 1 REMARK SEQADV LINK REVDAT 2 14-JUL-10 3IOG 1 JRNL REVDAT 1 23-JUN-10 3IOG 0 JRNL AUTH P.LASSAUX,M.HAMEL,M.GULEA,H.DELBRUCK,P.S.MERCURI,L.HORSFALL, JRNL AUTH 2 D.DEHARENG,M.KUPPER,J.-M.FRERE,K.HOFFMANN,M.GALLENI, JRNL AUTH 3 C.BEBRONE JRNL TITL MERCAPTOPHOSPHONATE COMPOUNDS AS BROAD-SPECTRUM INHIBITORS JRNL TITL 2 OF THE METALLO-BETA-LACTAMASES JRNL REF J.MED.CHEM. V. 53 4862 2010 JRNL REFN ISSN 0022-2623 JRNL PMID 20527888 JRNL DOI 10.1021/JM100213C REMARK 2 REMARK 2 RESOLUTION. 1.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 48493 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2494 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3175 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.1430 REMARK 3 BIN FREE R VALUE SET COUNT : 161 REMARK 3 BIN FREE R VALUE : 0.1760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1776 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 285 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : 0.45000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.051 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.049 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.025 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.264 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1978 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2686 ; 1.479 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 228 ; 6.176 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;27.711 ;23.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 364 ;11.301 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;16.923 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 302 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1420 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1156 ; 0.602 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1909 ; 0.986 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 822 ; 1.637 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 777 ; 2.382 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7190 17.6070 63.7940 REMARK 3 T TENSOR REMARK 3 T11: 0.0226 T22: 0.0108 REMARK 3 T33: 0.0142 T12: -0.0089 REMARK 3 T13: -0.0023 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.8451 L22: 1.6173 REMARK 3 L33: 0.9665 L12: -0.2484 REMARK 3 L13: -0.0076 L23: -0.0323 REMARK 3 S TENSOR REMARK 3 S11: 0.0043 S12: 0.0637 S13: 0.0645 REMARK 3 S21: -0.1039 S22: -0.0173 S23: -0.0462 REMARK 3 S31: -0.0520 S32: 0.0104 S33: 0.0131 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 93 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1270 21.9510 60.6720 REMARK 3 T TENSOR REMARK 3 T11: 0.0454 T22: 0.0445 REMARK 3 T33: 0.0489 T12: -0.0203 REMARK 3 T13: 0.0094 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.8045 L22: 2.5038 REMARK 3 L33: 1.5920 L12: 0.3817 REMARK 3 L13: 0.0167 L23: -1.3402 REMARK 3 S TENSOR REMARK 3 S11: -0.0049 S12: 0.0102 S13: 0.0562 REMARK 3 S21: -0.1139 S22: -0.0944 S23: -0.1107 REMARK 3 S31: -0.1010 S32: 0.1412 S33: 0.0993 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7020 13.1920 72.3430 REMARK 3 T TENSOR REMARK 3 T11: 0.0162 T22: 0.0312 REMARK 3 T33: 0.0144 T12: -0.0119 REMARK 3 T13: -0.0111 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.2312 L22: 1.0170 REMARK 3 L33: 1.2136 L12: 0.2699 REMARK 3 L13: -0.0397 L23: -0.0219 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: -0.0276 S13: 0.0067 REMARK 3 S21: -0.0132 S22: -0.0147 S23: -0.0718 REMARK 3 S31: -0.0413 S32: 0.1436 S33: 0.0305 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): 15.3040 10.1330 82.6910 REMARK 3 T TENSOR REMARK 3 T11: 0.0394 T22: 0.0472 REMARK 3 T33: 0.0255 T12: 0.0002 REMARK 3 T13: -0.0213 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.8266 L22: 2.2351 REMARK 3 L33: 1.3849 L12: 0.5190 REMARK 3 L13: 0.1250 L23: -0.1988 REMARK 3 S TENSOR REMARK 3 S11: -0.0267 S12: -0.0549 S13: -0.0179 REMARK 3 S21: 0.1486 S22: 0.0113 S23: -0.1629 REMARK 3 S31: 0.0872 S32: 0.0981 S33: 0.0154 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 150 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): 11.7340 -2.9660 72.4000 REMARK 3 T TENSOR REMARK 3 T11: 0.1150 T22: 0.0105 REMARK 3 T33: 0.0199 T12: -0.0249 REMARK 3 T13: 0.0053 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 3.0897 L22: 3.2712 REMARK 3 L33: 7.8940 L12: 0.3895 REMARK 3 L13: 1.0909 L23: 2.0278 REMARK 3 S TENSOR REMARK 3 S11: 0.1093 S12: -0.1157 S13: -0.1691 REMARK 3 S21: 0.1457 S22: -0.1053 S23: 0.0008 REMARK 3 S31: 0.6893 S32: -0.2346 S33: -0.0039 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 161 A 183 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5070 11.1340 76.1190 REMARK 3 T TENSOR REMARK 3 T11: 0.0293 T22: 0.0462 REMARK 3 T33: 0.0307 T12: -0.0154 REMARK 3 T13: -0.0154 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.6107 L22: 0.8957 REMARK 3 L33: 1.2029 L12: 0.0219 REMARK 3 L13: 0.1059 L23: 0.1017 REMARK 3 S TENSOR REMARK 3 S11: 0.0150 S12: -0.0607 S13: -0.0015 REMARK 3 S21: 0.0866 S22: -0.0221 S23: -0.1194 REMARK 3 S31: 0.0816 S32: 0.1109 S33: 0.0071 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 184 A 225 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9670 19.3520 76.4650 REMARK 3 T TENSOR REMARK 3 T11: 0.0254 T22: 0.0321 REMARK 3 T33: 0.0210 T12: -0.0003 REMARK 3 T13: -0.0054 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.6855 L22: 0.7103 REMARK 3 L33: 1.3634 L12: 0.0732 REMARK 3 L13: -0.0569 L23: -0.3188 REMARK 3 S TENSOR REMARK 3 S11: -0.0241 S12: -0.0509 S13: 0.0498 REMARK 3 S21: 0.0357 S22: 0.0187 S23: 0.0076 REMARK 3 S31: -0.0977 S32: -0.0792 S33: 0.0053 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 226 A 252 REMARK 3 ORIGIN FOR THE GROUP (A): -5.2300 8.8100 79.2650 REMARK 3 T TENSOR REMARK 3 T11: 0.0612 T22: 0.0908 REMARK 3 T33: 0.0492 T12: -0.0259 REMARK 3 T13: 0.0051 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.2566 L22: 2.2201 REMARK 3 L33: 2.2729 L12: -0.2991 REMARK 3 L13: -0.9864 L23: 1.2580 REMARK 3 S TENSOR REMARK 3 S11: -0.1498 S12: 0.0153 S13: -0.1182 REMARK 3 S21: 0.0620 S22: 0.0899 S23: 0.0213 REMARK 3 S31: 0.2012 S32: -0.1831 S33: 0.0599 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 253 A 291 REMARK 3 ORIGIN FOR THE GROUP (A): -3.2250 19.7330 68.3140 REMARK 3 T TENSOR REMARK 3 T11: 0.0098 T22: 0.0438 REMARK 3 T33: 0.0248 T12: 0.0030 REMARK 3 T13: -0.0070 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.6731 L22: 2.2076 REMARK 3 L33: 1.6066 L12: -0.4826 REMARK 3 L13: -0.1500 L23: 0.4013 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: 0.0050 S13: 0.0060 REMARK 3 S21: -0.0152 S22: 0.0213 S23: 0.0916 REMARK 3 S31: -0.0923 S32: -0.1907 S33: -0.0228 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 292 A 307 REMARK 3 ORIGIN FOR THE GROUP (A): -10.5250 9.3980 73.6170 REMARK 3 T TENSOR REMARK 3 T11: 0.0342 T22: 0.1561 REMARK 3 T33: 0.0407 T12: -0.0615 REMARK 3 T13: -0.0027 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 4.0273 L22: 4.9893 REMARK 3 L33: 4.8810 L12: 0.8595 REMARK 3 L13: -0.8749 L23: -1.7207 REMARK 3 S TENSOR REMARK 3 S11: -0.1334 S12: 0.0665 S13: -0.1642 REMARK 3 S21: -0.0228 S22: 0.1890 S23: 0.0846 REMARK 3 S31: 0.3278 S32: -0.4990 S33: -0.0557 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; REMARK 500 WAS GENERATED FOR GLU 184 WITH ZERO REMARK 3 OCCUPANCY AND CAN BE IGNORED REMARK 4 REMARK 4 3IOG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054664. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48494 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.410 REMARK 200 RESOLUTION RANGE LOW (A) : 19.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 37.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.10000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1X8G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4M (NH4)2SO4, 100MM MES, PH 6.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.77950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.77950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 21.36350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.43850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 21.36350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.43850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.77950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 21.36350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.43850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.77950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 21.36350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.43850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O1 SO4 A 4 LIES ON A SPECIAL POSITION. REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 184 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 184 CD GLU A 184 OE1 -0.222 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 184 OE1 - CD - OE2 ANGL. DEV. = 18.1 DEGREES REMARK 500 GLU A 184 CG - CD - OE2 ANGL. DEV. = -14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 49 119.48 -163.84 REMARK 500 TYR A 60 -126.75 57.28 REMARK 500 THR A 86 172.52 75.26 REMARK 500 ALA A 195 -105.34 -157.48 REMARK 500 ASP A 264 -160.70 62.19 REMARK 500 GLN A 306 7.99 80.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD2 REMARK 620 2 CYS A 221 SG 108.3 REMARK 620 3 HIS A 263 NE2 94.0 118.5 REMARK 620 4 SDF A 311 O11 109.8 117.5 106.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SDF A 311 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X8G RELATED DB: PDB REMARK 900 WILD TYPE CRYSTAL STRUCTURE REMARK 900 RELATED ID: 1X8H RELATED DB: PDB REMARK 900 N220G MUTANT CRYSTAL STRUCTURE REMARK 900 RELATED ID: 1X8I RELATED DB: PDB REMARK 900 N220G MUTANT CRYSTAL STRUCTURE WITH ANTIBIOTIC BIAPENEM REMARK 900 RELATED ID: 3F9O RELATED DB: PDB REMARK 900 DI ZINC CRYSTAL STRUCTURE WILD TYPE REMARK 900 RELATED ID: 3FAI RELATED DB: PDB REMARK 900 DI ZINC CRYSTAL STRUCTURE N220G MUTANT REMARK 900 RELATED ID: 3IOF RELATED DB: PDB REMARK 900 N220G MUTANT CRYSTAL STRUCTURE WITH INHIBITOR 10A REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS COORDINATES USE NON-SEQUENTIAL RESIDUE NUMBERING. REMARK 999 THE NUMBERING RELATES TO PDB ENTRY 1X8G. DBREF 3IOG A 41 307 UNP P26918 BLAB_AERHY 28 254 SEQADV 3IOG GLY A 220 UNP P26918 ASN 192 ENGINEERED MUTATION SEQRES 1 A 227 ALA GLY MET SER LEU THR GLN VAL SER GLY PRO VAL TYR SEQRES 2 A 227 VAL VAL GLU ASP ASN TYR TYR VAL GLN GLU ASN SER MET SEQRES 3 A 227 VAL TYR PHE GLY ALA LYS GLY VAL THR VAL VAL GLY ALA SEQRES 4 A 227 THR TRP THR PRO ASP THR ALA ARG GLU LEU HIS LYS LEU SEQRES 5 A 227 ILE LYS ARG VAL SER ARG LYS PRO VAL LEU GLU VAL ILE SEQRES 6 A 227 ASN THR ASN TYR HIS THR ASP ARG ALA GLY GLY ASN ALA SEQRES 7 A 227 TYR TRP LYS SER ILE GLY ALA LYS VAL VAL SER THR ARG SEQRES 8 A 227 GLN THR ARG ASP LEU MET LYS SER ASP TRP ALA GLU ILE SEQRES 9 A 227 VAL ALA PHE THR ARG LYS GLY LEU PRO GLU TYR PRO ASP SEQRES 10 A 227 LEU PRO LEU VAL LEU PRO ASN VAL VAL HIS ASP GLY ASP SEQRES 11 A 227 PHE THR LEU GLN GLU GLY LYS VAL ARG ALA PHE TYR ALA SEQRES 12 A 227 GLY PRO ALA HIS THR PRO ASP GLY ILE PHE VAL TYR PHE SEQRES 13 A 227 PRO ASP GLU GLN VAL LEU TYR GLY GLY CYS ILE LEU LYS SEQRES 14 A 227 GLU LYS LEU GLY ASN LEU SER PHE ALA ASP VAL LYS ALA SEQRES 15 A 227 TYR PRO GLN THR LEU GLU ARG LEU LYS ALA MET LYS LEU SEQRES 16 A 227 PRO ILE LYS THR VAL ILE GLY GLY HIS ASP SER PRO LEU SEQRES 17 A 227 HIS GLY PRO GLU LEU ILE ASP HIS TYR GLU ALA LEU ILE SEQRES 18 A 227 LYS ALA ALA PRO GLN SER HET ZN A 1 1 HET GOL A 2 6 HET GOL A 3 6 HET SO4 A 308 5 HET SO4 A 309 5 HET SO4 A 310 5 HET SO4 A 4 5 HET SO4 A 5 5 HET SDF A 311 14 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM SDF [(R)-(2,4-DICHLOROPHENYL)(SULFANYL)METHYL]PHOSPHONIC HETNAM 2 SDF ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN SDF ALPHA-SULFANYL(2,4-DICHLOROBENZYL)PHOSPHONIC ACID FORMUL 2 ZN ZN 2+ FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 SO4 5(O4 S 2-) FORMUL 10 SDF C7 H7 CL2 O3 P S FORMUL 11 HOH *285(H2 O) HELIX 1 1 THR A 88 ARG A 102 1 14 HELIX 2 2 HIS A 118 GLY A 123 1 6 HELIX 3 3 GLY A 124 ILE A 131 1 8 HELIX 4 4 ARG A 140 LEU A 161 1 22 HELIX 5 5 GLY A 220 LEU A 223 5 4 HELIX 6 6 LYS A 240 MET A 252 1 13 HELIX 7 7 PRO A 291 ALA A 304 1 14 SHEET 1 A 7 MET A 43 SER A 49 0 SHEET 2 A 7 VAL A 52 ASP A 57 -1 O VAL A 54 N THR A 46 SHEET 3 A 7 GLU A 69 PHE A 75 -1 O SER A 71 N VAL A 55 SHEET 4 A 7 VAL A 80 VAL A 83 -1 O VAL A 83 N MET A 72 SHEET 5 A 7 VAL A 109 ILE A 113 1 O GLU A 111 N VAL A 82 SHEET 6 A 7 LYS A 135 THR A 139 1 O VAL A 137 N VAL A 112 SHEET 7 A 7 VAL A 174 HIS A 176 1 O VAL A 174 N VAL A 136 SHEET 1 B 6 PHE A 180 LEU A 182 0 SHEET 2 B 6 VAL A 187 PHE A 190 -1 O ALA A 189 N PHE A 180 SHEET 3 B 6 PHE A 202 PHE A 205 -1 O TYR A 204 N ARG A 188 SHEET 4 B 6 VAL A 216 TYR A 218 -1 O TYR A 218 N VAL A 203 SHEET 5 B 6 THR A 258 ILE A 260 1 O THR A 258 N LEU A 217 SHEET 6 B 6 LEU A 267 HIS A 289 -1 O HIS A 289 N VAL A 259 LINK ZN ZN A 1 OD2 ASP A 120 1555 1555 1.94 LINK ZN ZN A 1 SG CYS A 221 1555 1555 2.32 LINK ZN ZN A 1 NE2 HIS A 263 1555 1555 2.08 LINK ZN ZN A 1 O11 SDF A 311 1555 1555 1.96 SITE 1 AC1 4 ASP A 120 CYS A 221 HIS A 263 SDF A 311 SITE 1 AC2 7 HOH A 28 THR A 181 LEU A 182 GLN A 183 SITE 2 AC2 7 GLU A 184 HOH A 330 HOH A 365 SITE 1 AC3 5 ASP A 179 ARG A 188 PHE A 190 HOH A 332 SITE 2 AC3 5 HOH A 423 SITE 1 AC4 5 HIS A 176 ASP A 177 GLY A 178 ASP A 179 SITE 2 AC4 5 HOH A 524 SITE 1 AC5 4 HOH A 64 ARG A 140 ARG A 143 HOH A 362 SITE 1 AC6 5 LYS A 97 ARG A 102 HOH A 214 LYS A 257 SITE 2 AC6 5 HOH A 324 SITE 1 AC7 2 ARG A 143 LYS A 147 SITE 1 AC8 8 LYS A 129 VAL A 170 LEU A 171 HOH A 270 SITE 2 AC8 8 LYS A 302 HOH A 410 HOH A 450 HOH A 495 SITE 1 AC9 13 ZN A 1 VAL A 67 TRP A 87 ASP A 120 SITE 2 AC9 13 HIS A 196 CYS A 221 LYS A 224 GLY A 232 SITE 3 AC9 13 ASN A 233 HIS A 263 HOH A 347 HOH A 419 SITE 4 AC9 13 HOH A 473 CRYST1 42.727 100.877 117.559 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023404 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009913 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008506 0.00000