data_3IOL # _entry.id 3IOL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.294 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3IOL RCSB RCSB054669 WWPDB D_1000054669 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3C59 'The same protein in complex with the antagonist (SeMet14,21)-exendin-4(9-39)' unspecified PDB 3C5T 'The same protein in complex with the antagonist exendin-4(9-39)' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3IOL _pdbx_database_status.recvd_initial_deposition_date 2009-08-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Reedtz-Runge, S.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of glucagon-like peptide-1 in complex with the extracellular domain of the glucagon-like peptide-1 receptor' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 285 _citation.page_first 723 _citation.page_last 730 _citation.year 2010 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19861722 _citation.pdbx_database_id_DOI 10.1074/jbc.M109.033829 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Underwood, C.R.' 1 primary 'Garibay, P.' 2 primary 'Knudsen, L.B.' 3 primary 'Hastrup, S.' 4 primary 'Peters, G.H.' 5 primary 'Rudolph, R.' 6 primary 'Reedtz-Runge, S.' 7 # _cell.entry_id 3IOL _cell.length_a 35.670 _cell.length_b 42.670 _cell.length_c 95.090 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3IOL _symmetry.space_group_name_H-M 'P 21 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Glucagon-like peptide 1 receptor' 14739.316 1 ? ? 'N-terminal extracellular domain, UNP residues 24-145' ? 2 polymer syn Glucagon 3359.699 1 ? ? 'UNP residues 98-128' ? 3 non-polymer man 'decyl 4-O-alpha-D-glucopyranosyl-1-thio-beta-D-glucopyranoside' 498.628 1 ? ? ? ? 4 water nat water 18.015 73 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'GLP-1 receptor, GLP-1-R, GLP-1R' 2 'GLP-1, Glucagon-like peptide 1, Glicentin, Glicentin-related polypeptide' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSHMRPQGATVSLWETVQKWREYRRQCQRSLTEDPPPATDLFCNRTFDEYACWPDGEPGSFVNVSCPWYLPWASSVPQGH VYRFCTAEGLWLQKDNSSLPWRDLSECEESKRGERSSPEEQLLFLY ; ;GSHMRPQGATVSLWETVQKWREYRRQCQRSLTEDPPPATDLFCNRTFDEYACWPDGEPGSFVNVSCPWYLPWASSVPQGH VYRFCTAEGLWLQKDNSSLPWRDLSECEESKRGERSSPEEQLLFLY ; A ? 2 'polypeptide(L)' no no HAEGTFTSDVSSYLEGQAAKEFIAWLVKGRG HAEGTFTSDVSSYLEGQAAKEFIAWLVKGRG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ARG n 1 6 PRO n 1 7 GLN n 1 8 GLY n 1 9 ALA n 1 10 THR n 1 11 VAL n 1 12 SER n 1 13 LEU n 1 14 TRP n 1 15 GLU n 1 16 THR n 1 17 VAL n 1 18 GLN n 1 19 LYS n 1 20 TRP n 1 21 ARG n 1 22 GLU n 1 23 TYR n 1 24 ARG n 1 25 ARG n 1 26 GLN n 1 27 CYS n 1 28 GLN n 1 29 ARG n 1 30 SER n 1 31 LEU n 1 32 THR n 1 33 GLU n 1 34 ASP n 1 35 PRO n 1 36 PRO n 1 37 PRO n 1 38 ALA n 1 39 THR n 1 40 ASP n 1 41 LEU n 1 42 PHE n 1 43 CYS n 1 44 ASN n 1 45 ARG n 1 46 THR n 1 47 PHE n 1 48 ASP n 1 49 GLU n 1 50 TYR n 1 51 ALA n 1 52 CYS n 1 53 TRP n 1 54 PRO n 1 55 ASP n 1 56 GLY n 1 57 GLU n 1 58 PRO n 1 59 GLY n 1 60 SER n 1 61 PHE n 1 62 VAL n 1 63 ASN n 1 64 VAL n 1 65 SER n 1 66 CYS n 1 67 PRO n 1 68 TRP n 1 69 TYR n 1 70 LEU n 1 71 PRO n 1 72 TRP n 1 73 ALA n 1 74 SER n 1 75 SER n 1 76 VAL n 1 77 PRO n 1 78 GLN n 1 79 GLY n 1 80 HIS n 1 81 VAL n 1 82 TYR n 1 83 ARG n 1 84 PHE n 1 85 CYS n 1 86 THR n 1 87 ALA n 1 88 GLU n 1 89 GLY n 1 90 LEU n 1 91 TRP n 1 92 LEU n 1 93 GLN n 1 94 LYS n 1 95 ASP n 1 96 ASN n 1 97 SER n 1 98 SER n 1 99 LEU n 1 100 PRO n 1 101 TRP n 1 102 ARG n 1 103 ASP n 1 104 LEU n 1 105 SER n 1 106 GLU n 1 107 CYS n 1 108 GLU n 1 109 GLU n 1 110 SER n 1 111 LYS n 1 112 ARG n 1 113 GLY n 1 114 GLU n 1 115 ARG n 1 116 SER n 1 117 SER n 1 118 PRO n 1 119 GLU n 1 120 GLU n 1 121 GLN n 1 122 LEU n 1 123 LEU n 1 124 PHE n 1 125 LEU n 1 126 TYR n 2 1 HIS n 2 2 ALA n 2 3 GLU n 2 4 GLY n 2 5 THR n 2 6 PHE n 2 7 THR n 2 8 SER n 2 9 ASP n 2 10 VAL n 2 11 SER n 2 12 SER n 2 13 TYR n 2 14 LEU n 2 15 GLU n 2 16 GLY n 2 17 GLN n 2 18 ALA n 2 19 ALA n 2 20 LYS n 2 21 GLU n 2 22 PHE n 2 23 ILE n 2 24 ALA n 2 25 TRP n 2 26 LEU n 2 27 VAL n 2 28 LYS n 2 29 GLY n 2 30 ARG n 2 31 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details 'This peptide has been chemically synthesized' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP GLP1R_HUMAN P43220 1 ;RPQGATVSLWETVQKWREYRRQCQRSLTEDPPPATDLFCNRTFDEYACWPDGEPGSFVNVSCPWYLPWASSVPQGHVYRF CTAEGLWLQKDNSSLPWRDLSECEESKRGERSSPEEQLLFLY ; 24 ? 2 UNP GLUC_HUMAN P01275 2 HAEGTFTSDVSSYLEGQAAKEFIAWLVKGRG 98 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3IOL A 5 ? 126 ? P43220 24 ? 145 ? 24 145 2 2 3IOL B 1 ? 31 ? P01275 98 ? 128 ? 7 37 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3IOL GLY A 1 ? UNP P43220 ? ? 'EXPRESSION TAG' 20 1 1 3IOL SER A 2 ? UNP P43220 ? ? 'EXPRESSION TAG' 21 2 1 3IOL HIS A 3 ? UNP P43220 ? ? 'EXPRESSION TAG' 22 3 1 3IOL MET A 4 ? UNP P43220 ? ? 'EXPRESSION TAG' 23 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 10M D-saccharide . 'decyl 4-O-alpha-D-glucopyranosyl-1-thio-beta-D-glucopyranoside' ;(2R,3R,4S,5S,6R)-2-((2R,3S,4R,5R,6S)-6-Decylsulfanyl-4,5-dihydroxy-2-hydroxymethyl-tetrahydro-pyran-3-yloxy)-6-hydroxymethyl-tetrahydro-pyran-3,4,5-triol, n-Decyl-beta-D-thiomaltoside ; 'C22 H42 O10 S' 498.628 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3IOL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.00 _exptl_crystal.density_percent_sol 38.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.9 _exptl_crystal_grow.pdbx_details ;0.1M N-(2-Acetamido) Iminodiacetic Acid (ADA), pH 6.9, 14 vol-% (+/-)-2-Methyl-2,4-pentanediol (MPD), 9mM n-decyl-beta-D-thiomaltoside, VAPOR DIFFUSION, HANGING DROP, temperature 291K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2008-11-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'MAX II BEAMLINE I911-3' _diffrn_source.pdbx_synchrotron_site 'MAX II' _diffrn_source.pdbx_synchrotron_beamline I911-3 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 3IOL _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 95 _reflns.d_resolution_high 2.1 _reflns.number_obs 10348 _reflns.number_all 10585 _reflns.percent_possible_obs 98 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.111 _reflns.pdbx_netI_over_sigmaI 14 _reflns.B_iso_Wilson_estimate 25.8 _reflns.pdbx_redundancy 7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.1 _reflns_shell.d_res_low 2.2 _reflns_shell.percent_possible_all 98 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.449 _reflns_shell.meanI_over_sigI_obs 5.3 _reflns_shell.pdbx_redundancy 7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1132 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3IOL _refine.ls_number_reflns_obs 8357 _refine.ls_number_reflns_all 8786 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.53 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 97.85 _refine.ls_R_factor_obs 0.18058 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17816 _refine.ls_R_factor_R_free 0.22622 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 429 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.914 _refine.B_iso_mean 13.663 _refine.aniso_B[1][1] 2.61 _refine.aniso_B[2][2] -1.42 _refine.aniso_B[3][3] -1.19 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB entry 3C59 without ligand' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.204 _refine.pdbx_overall_ESU_R_Free 0.177 _refine.overall_SU_ML 0.130 _refine.overall_SU_B 10.679 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1024 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 73 _refine_hist.number_atoms_total 1130 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 28.53 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.020 0.022 ? 1074 'X-RAY DIFFRACTION' ? r_bond_other_d 0.003 0.020 ? 742 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.681 1.934 ? 1466 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.072 3.000 ? 1788 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.462 5.000 ? 124 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 30.406 23.585 ? 53 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.042 15.000 ? 156 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.082 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.097 0.200 ? 147 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.021 ? 1184 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 235 'X-RAY DIFFRACTION' ? r_mcbond_it 1.003 1.500 ? 629 'X-RAY DIFFRACTION' ? r_mcbond_other 0.263 1.500 ? 249 'X-RAY DIFFRACTION' ? r_mcangle_it 1.885 2.000 ? 1015 'X-RAY DIFFRACTION' ? r_scbond_it 2.859 3.000 ? 445 'X-RAY DIFFRACTION' ? r_scangle_it 4.717 4.500 ? 448 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.100 _refine_ls_shell.d_res_low 2.155 _refine_ls_shell.number_reflns_R_work 581 _refine_ls_shell.R_factor_R_work 0.187 _refine_ls_shell.percent_reflns_obs 96.55 _refine_ls_shell.R_factor_R_free 0.255 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 35 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3IOL _struct.title 'Crystal structure of Glucagon-Like Peptide-1 in complex with the extracellular domain of the Glucagon-Like Peptide-1 Receptor' _struct.pdbx_descriptor 'Glucagon-like peptide 1 receptor, Glucagon' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3IOL _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN/SIGNALING PROTEIN' _struct_keywords.text ;receptor-ligand complex, Cell membrane, Disulfide bond, G-protein coupled receptor, Glycoprotein, Membrane, Receptor, Transducer, Transmembrane, Amidation, Cleavage on pair of basic residues, Hormone, Secreted, SIGNALING PROTEIN-SIGNALING PROTEIN COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 12 ? ASP A 34 ? SER A 31 ASP A 53 1 ? 23 HELX_P HELX_P2 2 TRP A 72 ? VAL A 76 ? TRP A 91 VAL A 95 5 ? 5 HELX_P HELX_P3 3 LEU A 104 ? GLU A 108 ? LEU A 123 GLU A 127 5 ? 5 HELX_P HELX_P4 4 PHE B 6 ? LYS B 28 ? PHE B 12 LYS B 34 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 27 SG ? ? ? 1_555 A CYS 52 SG ? ? A CYS 46 A CYS 71 1_555 ? ? ? ? ? ? ? 2.138 ? disulf2 disulf ? ? A CYS 43 SG ? ? ? 1_555 A CYS 85 SG ? ? A CYS 62 A CYS 104 1_555 ? ? ? ? ? ? ? 2.064 ? disulf3 disulf ? ? A CYS 66 SG ? ? ? 1_555 A CYS 107 SG ? ? A CYS 85 A CYS 126 1_555 ? ? ? ? ? ? ? 1.984 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 46 ? PHE A 47 ? THR A 65 PHE A 66 A 2 CYS A 52 ? TRP A 53 ? CYS A 71 TRP A 72 B 1 SER A 60 ? SER A 65 ? SER A 79 SER A 84 B 2 HIS A 80 ? CYS A 85 ? HIS A 99 CYS A 104 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 46 ? N THR A 65 O TRP A 53 ? O TRP A 72 B 1 2 N SER A 60 ? N SER A 79 O CYS A 85 ? O CYS A 104 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'BINDING SITE FOR RESIDUE 10M A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 TYR A 82 ? TYR A 101 . ? 1_555 ? 2 AC1 8 LEU A 92 ? LEU A 111 . ? 2_555 ? 3 AC1 8 ASP A 95 ? ASP A 114 . ? 2_555 ? 4 AC1 8 TRP A 101 ? TRP A 120 . ? 2_555 ? 5 AC1 8 ASP A 103 ? ASP A 122 . ? 1_555 ? 6 AC1 8 THR B 7 ? THR B 13 . ? 1_545 ? 7 AC1 8 VAL B 10 ? VAL B 16 . ? 1_545 ? 8 AC1 8 SER B 11 ? SER B 17 . ? 1_545 ? # _database_PDB_matrix.entry_id 3IOL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3IOL _atom_sites.fract_transf_matrix[1][1] 0.028035 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023436 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010516 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 20 ? ? ? A . n A 1 2 SER 2 21 ? ? ? A . n A 1 3 HIS 3 22 ? ? ? A . n A 1 4 MET 4 23 ? ? ? A . n A 1 5 ARG 5 24 ? ? ? A . n A 1 6 PRO 6 25 ? ? ? A . n A 1 7 GLN 7 26 ? ? ? A . n A 1 8 GLY 8 27 ? ? ? A . n A 1 9 ALA 9 28 ? ? ? A . n A 1 10 THR 10 29 29 THR THR A . n A 1 11 VAL 11 30 30 VAL VAL A . n A 1 12 SER 12 31 31 SER SER A . n A 1 13 LEU 13 32 32 LEU LEU A . n A 1 14 TRP 14 33 33 TRP TRP A . n A 1 15 GLU 15 34 34 GLU GLU A . n A 1 16 THR 16 35 35 THR THR A . n A 1 17 VAL 17 36 36 VAL VAL A . n A 1 18 GLN 18 37 37 GLN GLN A . n A 1 19 LYS 19 38 38 LYS LYS A . n A 1 20 TRP 20 39 39 TRP TRP A . n A 1 21 ARG 21 40 40 ARG ARG A . n A 1 22 GLU 22 41 41 GLU GLU A . n A 1 23 TYR 23 42 42 TYR TYR A . n A 1 24 ARG 24 43 43 ARG ARG A . n A 1 25 ARG 25 44 44 ARG ARG A . n A 1 26 GLN 26 45 45 GLN GLN A . n A 1 27 CYS 27 46 46 CYS CYS A . n A 1 28 GLN 28 47 47 GLN GLN A . n A 1 29 ARG 29 48 48 ARG ARG A . n A 1 30 SER 30 49 49 SER SER A . n A 1 31 LEU 31 50 50 LEU LEU A . n A 1 32 THR 32 51 51 THR THR A . n A 1 33 GLU 33 52 52 GLU GLU A . n A 1 34 ASP 34 53 53 ASP ASP A . n A 1 35 PRO 35 54 54 PRO PRO A . n A 1 36 PRO 36 55 55 PRO PRO A . n A 1 37 PRO 37 56 56 PRO PRO A . n A 1 38 ALA 38 57 57 ALA ALA A . n A 1 39 THR 39 58 58 THR THR A . n A 1 40 ASP 40 59 59 ASP ASP A . n A 1 41 LEU 41 60 60 LEU LEU A . n A 1 42 PHE 42 61 61 PHE PHE A . n A 1 43 CYS 43 62 62 CYS CYS A . n A 1 44 ASN 44 63 63 ASN ASN A . n A 1 45 ARG 45 64 64 ARG ARG A . n A 1 46 THR 46 65 65 THR THR A . n A 1 47 PHE 47 66 66 PHE PHE A . n A 1 48 ASP 48 67 67 ASP ASP A . n A 1 49 GLU 49 68 68 GLU GLU A . n A 1 50 TYR 50 69 69 TYR TYR A . n A 1 51 ALA 51 70 70 ALA ALA A . n A 1 52 CYS 52 71 71 CYS CYS A . n A 1 53 TRP 53 72 72 TRP TRP A . n A 1 54 PRO 54 73 73 PRO PRO A . n A 1 55 ASP 55 74 74 ASP ASP A . n A 1 56 GLY 56 75 75 GLY GLY A . n A 1 57 GLU 57 76 76 GLU GLU A . n A 1 58 PRO 58 77 77 PRO PRO A . n A 1 59 GLY 59 78 78 GLY GLY A . n A 1 60 SER 60 79 79 SER SER A . n A 1 61 PHE 61 80 80 PHE PHE A . n A 1 62 VAL 62 81 81 VAL VAL A . n A 1 63 ASN 63 82 82 ASN ASN A . n A 1 64 VAL 64 83 83 VAL VAL A . n A 1 65 SER 65 84 84 SER SER A . n A 1 66 CYS 66 85 85 CYS CYS A . n A 1 67 PRO 67 86 86 PRO PRO A . n A 1 68 TRP 68 87 87 TRP TRP A . n A 1 69 TYR 69 88 88 TYR TYR A . n A 1 70 LEU 70 89 89 LEU LEU A . n A 1 71 PRO 71 90 90 PRO PRO A . n A 1 72 TRP 72 91 91 TRP TRP A . n A 1 73 ALA 73 92 92 ALA ALA A . n A 1 74 SER 74 93 93 SER SER A . n A 1 75 SER 75 94 94 SER SER A . n A 1 76 VAL 76 95 95 VAL VAL A . n A 1 77 PRO 77 96 96 PRO PRO A . n A 1 78 GLN 78 97 97 GLN GLN A . n A 1 79 GLY 79 98 98 GLY GLY A . n A 1 80 HIS 80 99 99 HIS HIS A . n A 1 81 VAL 81 100 100 VAL VAL A . n A 1 82 TYR 82 101 101 TYR TYR A . n A 1 83 ARG 83 102 102 ARG ARG A . n A 1 84 PHE 84 103 103 PHE PHE A . n A 1 85 CYS 85 104 104 CYS CYS A . n A 1 86 THR 86 105 105 THR THR A . n A 1 87 ALA 87 106 106 ALA ALA A . n A 1 88 GLU 88 107 107 GLU GLU A . n A 1 89 GLY 89 108 108 GLY GLY A . n A 1 90 LEU 90 109 109 LEU LEU A . n A 1 91 TRP 91 110 110 TRP TRP A . n A 1 92 LEU 92 111 111 LEU LEU A . n A 1 93 GLN 93 112 112 GLN GLN A . n A 1 94 LYS 94 113 113 LYS LYS A . n A 1 95 ASP 95 114 114 ASP ASP A . n A 1 96 ASN 96 115 115 ASN GLY A . n A 1 97 SER 97 116 116 SER SER A . n A 1 98 SER 98 117 117 SER SER A . n A 1 99 LEU 99 118 118 LEU LEU A . n A 1 100 PRO 100 119 119 PRO PRO A . n A 1 101 TRP 101 120 120 TRP TRP A . n A 1 102 ARG 102 121 121 ARG ARG A . n A 1 103 ASP 103 122 122 ASP ASP A . n A 1 104 LEU 104 123 123 LEU LEU A . n A 1 105 SER 105 124 124 SER SER A . n A 1 106 GLU 106 125 125 GLU GLU A . n A 1 107 CYS 107 126 126 CYS CYS A . n A 1 108 GLU 108 127 127 GLU GLU A . n A 1 109 GLU 109 128 128 GLU GLU A . n A 1 110 SER 110 129 ? ? ? A . n A 1 111 LYS 111 130 ? ? ? A . n A 1 112 ARG 112 131 ? ? ? A . n A 1 113 GLY 113 132 ? ? ? A . n A 1 114 GLU 114 133 ? ? ? A . n A 1 115 ARG 115 134 ? ? ? A . n A 1 116 SER 116 135 ? ? ? A . n A 1 117 SER 117 136 ? ? ? A . n A 1 118 PRO 118 137 ? ? ? A . n A 1 119 GLU 119 138 ? ? ? A . n A 1 120 GLU 120 139 ? ? ? A . n A 1 121 GLN 121 140 ? ? ? A . n A 1 122 LEU 122 141 ? ? ? A . n A 1 123 LEU 123 142 ? ? ? A . n A 1 124 PHE 124 143 ? ? ? A . n A 1 125 LEU 125 144 ? ? ? A . n A 1 126 TYR 126 145 ? ? ? A . n B 2 1 HIS 1 7 ? ? ? B . n B 2 2 ALA 2 8 ? ? ? B . n B 2 3 GLU 3 9 ? ? ? B . n B 2 4 GLY 4 10 10 GLY GLY B . n B 2 5 THR 5 11 11 THR THR B . n B 2 6 PHE 6 12 12 PHE PHE B . n B 2 7 THR 7 13 13 THR THR B . n B 2 8 SER 8 14 14 SER SER B . n B 2 9 ASP 9 15 15 ASP ASP B . n B 2 10 VAL 10 16 16 VAL VAL B . n B 2 11 SER 11 17 17 SER SER B . n B 2 12 SER 12 18 18 SER SER B . n B 2 13 TYR 13 19 19 TYR TYR B . n B 2 14 LEU 14 20 20 LEU LEU B . n B 2 15 GLU 15 21 21 GLU GLU B . n B 2 16 GLY 16 22 22 GLY GLY B . n B 2 17 GLN 17 23 23 GLN GLN B . n B 2 18 ALA 18 24 24 ALA ALA B . n B 2 19 ALA 19 25 25 ALA ALA B . n B 2 20 LYS 20 26 26 LYS LYS B . n B 2 21 GLU 21 27 27 GLU GLU B . n B 2 22 PHE 22 28 28 PHE PHE B . n B 2 23 ILE 23 29 29 ILE ILE B . n B 2 24 ALA 24 30 30 ALA ALA B . n B 2 25 TRP 25 31 31 TRP TRP B . n B 2 26 LEU 26 32 32 LEU LEU B . n B 2 27 VAL 27 33 33 VAL VAL B . n B 2 28 LYS 28 34 34 LYS LYS B . n B 2 29 GLY 29 35 35 GLY GLY B . n B 2 30 ARG 30 36 ? ? ? B . n B 2 31 GLY 31 37 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 10M 1 1 1 10M DET A . D 4 HOH 1 2 2 HOH HOH A . D 4 HOH 2 3 3 HOH HOH A . D 4 HOH 3 4 4 HOH HOH A . D 4 HOH 4 5 5 HOH HOH A . D 4 HOH 5 6 6 HOH HOH A . D 4 HOH 6 7 7 HOH HOH A . D 4 HOH 7 8 8 HOH HOH A . D 4 HOH 8 9 9 HOH HOH A . D 4 HOH 9 11 11 HOH HOH A . D 4 HOH 10 12 12 HOH HOH A . D 4 HOH 11 13 13 HOH HOH A . D 4 HOH 12 14 14 HOH HOH A . D 4 HOH 13 17 17 HOH HOH A . D 4 HOH 14 18 18 HOH HOH A . D 4 HOH 15 19 19 HOH HOH A . D 4 HOH 16 146 1 HOH HOH A . D 4 HOH 17 147 20 HOH HOH A . D 4 HOH 18 148 21 HOH HOH A . D 4 HOH 19 149 22 HOH HOH A . D 4 HOH 20 150 23 HOH HOH A . D 4 HOH 21 151 24 HOH HOH A . D 4 HOH 22 152 25 HOH HOH A . D 4 HOH 23 153 26 HOH HOH A . D 4 HOH 24 154 27 HOH HOH A . D 4 HOH 25 155 29 HOH HOH A . D 4 HOH 26 156 30 HOH HOH A . D 4 HOH 27 157 31 HOH HOH A . D 4 HOH 28 158 32 HOH HOH A . D 4 HOH 29 159 33 HOH HOH A . D 4 HOH 30 160 34 HOH HOH A . D 4 HOH 31 161 35 HOH HOH A . D 4 HOH 32 162 36 HOH HOH A . D 4 HOH 33 163 38 HOH HOH A . D 4 HOH 34 164 40 HOH HOH A . D 4 HOH 35 165 41 HOH HOH A . D 4 HOH 36 166 42 HOH HOH A . D 4 HOH 37 167 43 HOH HOH A . D 4 HOH 38 168 44 HOH HOH A . D 4 HOH 39 169 45 HOH HOH A . D 4 HOH 40 170 47 HOH HOH A . D 4 HOH 41 171 48 HOH HOH A . D 4 HOH 42 172 50 HOH HOH A . D 4 HOH 43 173 51 HOH HOH A . D 4 HOH 44 174 52 HOH HOH A . D 4 HOH 45 175 53 HOH HOH A . D 4 HOH 46 176 54 HOH HOH A . D 4 HOH 47 177 55 HOH HOH A . D 4 HOH 48 178 56 HOH HOH A . D 4 HOH 49 179 57 HOH HOH A . D 4 HOH 50 180 58 HOH HOH A . D 4 HOH 51 181 59 HOH HOH A . D 4 HOH 52 182 60 HOH HOH A . D 4 HOH 53 183 62 HOH HOH A . D 4 HOH 54 184 63 HOH HOH A . D 4 HOH 55 185 64 HOH HOH A . D 4 HOH 56 186 65 HOH HOH A . D 4 HOH 57 187 66 HOH HOH A . D 4 HOH 58 188 70 HOH HOH A . D 4 HOH 59 189 71 HOH HOH A . D 4 HOH 60 190 72 HOH HOH A . D 4 HOH 61 191 73 HOH HOH A . E 4 HOH 1 38 10 HOH HOH B . E 4 HOH 2 39 39 HOH HOH B . E 4 HOH 3 40 16 HOH HOH B . E 4 HOH 4 41 28 HOH HOH B . E 4 HOH 5 42 37 HOH HOH B . E 4 HOH 6 43 15 HOH HOH B . E 4 HOH 7 46 46 HOH HOH B . E 4 HOH 8 49 49 HOH HOH B . E 4 HOH 9 61 61 HOH HOH B . E 4 HOH 10 67 67 HOH HOH B . E 4 HOH 11 68 68 HOH HOH B . E 4 HOH 12 69 69 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1100 ? 1 MORE -10 ? 1 'SSA (A^2)' 8030 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A 10M 1 ? C 10M . 2 1 A HOH 191 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-10-27 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-05-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' Advisory 4 3 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' diffrn_source 2 3 'Structure model' pdbx_unobs_or_zero_occ_atoms # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_diffrn_source.pdbx_synchrotron_site' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -5.9740 -16.6120 13.5130 0.0249 0.0359 0.0053 -0.0108 0.0049 -0.0051 0.3386 1.8018 0.4454 -0.1889 -0.1748 0.3468 0.0147 0.0236 0.0261 -0.0322 -0.0162 -0.0010 -0.0059 0.0315 0.0014 'X-RAY DIFFRACTION' 2 ? refined -3.6670 3.3610 3.5740 0.0381 0.0499 0.0219 -0.0167 0.0031 -0.0079 0.9042 9.3486 5.3619 -2.3283 1.9602 -6.9668 0.0231 -0.0813 0.0030 -0.1982 -0.0459 -0.0498 0.1499 -0.0427 0.0227 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 29 ? ? A 128 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 11 ? ? B 35 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language PHASER phasing . ? 1 ? ? ? ? REFMAC refinement 5.5.0088 ? 2 ? ? ? ? XDS 'data reduction' . ? 3 ? ? ? ? XSCALE 'data scaling' . ? 4 ? ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 17 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 188 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 VAL _pdbx_validate_rmsd_bond.auth_seq_id_1 83 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CG2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 VAL _pdbx_validate_rmsd_bond.auth_seq_id_2 83 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.377 _pdbx_validate_rmsd_bond.bond_target_value 1.524 _pdbx_validate_rmsd_bond.bond_deviation -0.147 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.021 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 68 ? ? 88.31 -18.62 2 1 ASN A 115 ? ? 76.33 -72.55 3 1 LYS B 34 ? ? -101.38 79.54 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASN 115 ? CB ? A ASN 96 CB 2 1 Y 1 A ASN 115 ? CG ? A ASN 96 CG 3 1 Y 1 A ASN 115 ? OD1 ? A ASN 96 OD1 4 1 Y 1 A ASN 115 ? ND2 ? A ASN 96 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 20 ? A GLY 1 2 1 Y 1 A SER 21 ? A SER 2 3 1 Y 1 A HIS 22 ? A HIS 3 4 1 Y 1 A MET 23 ? A MET 4 5 1 Y 1 A ARG 24 ? A ARG 5 6 1 Y 1 A PRO 25 ? A PRO 6 7 1 Y 1 A GLN 26 ? A GLN 7 8 1 Y 1 A GLY 27 ? A GLY 8 9 1 Y 1 A ALA 28 ? A ALA 9 10 1 Y 1 A SER 129 ? A SER 110 11 1 Y 1 A LYS 130 ? A LYS 111 12 1 Y 1 A ARG 131 ? A ARG 112 13 1 Y 1 A GLY 132 ? A GLY 113 14 1 Y 1 A GLU 133 ? A GLU 114 15 1 Y 1 A ARG 134 ? A ARG 115 16 1 Y 1 A SER 135 ? A SER 116 17 1 Y 1 A SER 136 ? A SER 117 18 1 Y 1 A PRO 137 ? A PRO 118 19 1 Y 1 A GLU 138 ? A GLU 119 20 1 Y 1 A GLU 139 ? A GLU 120 21 1 Y 1 A GLN 140 ? A GLN 121 22 1 Y 1 A LEU 141 ? A LEU 122 23 1 Y 1 A LEU 142 ? A LEU 123 24 1 Y 1 A PHE 143 ? A PHE 124 25 1 Y 1 A LEU 144 ? A LEU 125 26 1 Y 1 A TYR 145 ? A TYR 126 27 1 Y 1 B HIS 7 ? B HIS 1 28 1 Y 1 B ALA 8 ? B ALA 2 29 1 Y 1 B GLU 9 ? B GLU 3 30 1 Y 1 B ARG 36 ? B ARG 30 31 1 Y 1 B GLY 37 ? B GLY 31 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'decyl 4-O-alpha-D-glucopyranosyl-1-thio-beta-D-glucopyranoside' 10M 4 water HOH #