HEADER HORMONE 17-AUG-09 3IPB TITLE HUMAN TRANSTHYRETIN (TTR) COMPLEXED WITH A PALINDROMIC BIVALENT TITLE 2 AMYLOID INHIBITOR (11 CARBON LINKER). COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 21-147; COMPND 5 SYNONYM: PREALBUMIN, TBPA, TTR, ATTR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS AMYLOID, INHIBITOR, PALINDROME, AMYLOIDOSIS, DISEASE MUTATION, GAMMA- KEYWDS 2 CARBOXYGLUTAMIC ACID, GLYCOPROTEIN, HORMONE, NEUROPATHY, SECRETED, KEYWDS 3 THYROID HORMONE, TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR S.E.KOLSTOE,S.P.WOOD,M.B.PEPYS REVDAT 3 21-FEB-24 3IPB 1 REMARK REVDAT 2 08-DEC-10 3IPB 1 JRNL REVDAT 1 17-NOV-10 3IPB 0 JRNL AUTH S.E.KOLSTOE,P.P.MANGIONE,V.BELLOTTI,G.W.TAYLOR,G.A.TENNENT, JRNL AUTH 2 S.DEROO,A.J.MORRISON,A.J.COBB,A.COYNE,M.G.MCCAMMON, JRNL AUTH 3 T.D.WARNER,J.MITCHELL,R.GILL,M.D.SMITH,S.V.LEY,C.V.ROBINSON, JRNL AUTH 4 S.P.WOOD,M.B.PEPYS JRNL TITL TRAPPING OF PALINDROMIC LIGANDS WITHIN NATIVE TRANSTHYRETIN JRNL TITL 2 PREVENTS AMYLOID FORMATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 20483 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 21059958 JRNL DOI 10.1073/PNAS.1008255107 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0090 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 17552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 954 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1170 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1778 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 61 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.169 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.884 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1876 ; 0.028 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1219 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2557 ; 2.232 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2886 ; 1.025 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 223 ; 6.355 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 71 ;33.531 ;23.803 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 272 ;15.824 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;20.859 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 278 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2072 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 366 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1117 ; 1.482 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 448 ; 0.487 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1812 ; 2.619 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 759 ; 3.896 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 745 ; 6.207 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 21 REMARK 3 ORIGIN FOR THE GROUP (A): 25.4050 36.3470 34.9860 REMARK 3 T TENSOR REMARK 3 T11: 0.1143 T22: 0.0877 REMARK 3 T33: 0.0452 T12: -0.0130 REMARK 3 T13: 0.0289 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 16.8573 L22: 13.8274 REMARK 3 L33: 7.1586 L12: 12.8312 REMARK 3 L13: 10.5807 L23: 9.4917 REMARK 3 S TENSOR REMARK 3 S11: -0.2227 S12: 0.6661 S13: -0.0093 REMARK 3 S21: -0.3851 S22: 0.2230 S23: 0.0281 REMARK 3 S31: -0.1971 S32: 0.3122 S33: -0.0003 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 38 REMARK 3 ORIGIN FOR THE GROUP (A): 23.2390 25.2260 36.8610 REMARK 3 T TENSOR REMARK 3 T11: 0.0896 T22: 0.0814 REMARK 3 T33: 0.0881 T12: 0.0155 REMARK 3 T13: -0.0040 T23: -0.0333 REMARK 3 L TENSOR REMARK 3 L11: 4.8898 L22: 7.1169 REMARK 3 L33: 1.0560 L12: 3.1741 REMARK 3 L13: 0.9745 L23: 1.1067 REMARK 3 S TENSOR REMARK 3 S11: 0.1910 S12: -0.0374 S13: -0.5186 REMARK 3 S21: 0.1872 S22: -0.1973 S23: -0.1970 REMARK 3 S31: 0.0696 S32: -0.1024 S33: 0.0064 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 55 REMARK 3 ORIGIN FOR THE GROUP (A): 24.2840 26.3840 32.5800 REMARK 3 T TENSOR REMARK 3 T11: 0.0832 T22: 0.0839 REMARK 3 T33: 0.0443 T12: 0.0291 REMARK 3 T13: -0.0159 T23: -0.0524 REMARK 3 L TENSOR REMARK 3 L11: 5.8860 L22: 9.5052 REMARK 3 L33: 3.0774 L12: 2.5784 REMARK 3 L13: -0.7013 L23: -1.1086 REMARK 3 S TENSOR REMARK 3 S11: -0.0540 S12: 0.1633 S13: -0.2286 REMARK 3 S21: -0.0376 S22: 0.0563 S23: -0.0753 REMARK 3 S31: 0.0476 S32: 0.0171 S33: -0.0023 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 56 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7610 24.6310 32.9800 REMARK 3 T TENSOR REMARK 3 T11: 0.0940 T22: 0.0496 REMARK 3 T33: 0.1187 T12: 0.0246 REMARK 3 T13: 0.0012 T23: -0.0570 REMARK 3 L TENSOR REMARK 3 L11: 6.0993 L22: 2.3297 REMARK 3 L33: 2.0843 L12: 2.4994 REMARK 3 L13: 1.4345 L23: 0.6701 REMARK 3 S TENSOR REMARK 3 S11: -0.0237 S12: 0.1826 S13: -0.0584 REMARK 3 S21: -0.1261 S22: -0.0071 S23: 0.0188 REMARK 3 S31: 0.0280 S32: -0.1050 S33: 0.0308 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 33.4190 30.3930 45.6460 REMARK 3 T TENSOR REMARK 3 T11: 0.0243 T22: 0.0608 REMARK 3 T33: 0.1346 T12: 0.0078 REMARK 3 T13: -0.0279 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 3.8794 L22: 4.1023 REMARK 3 L33: 7.0865 L12: 1.9260 REMARK 3 L13: -3.9771 L23: -1.6403 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: 0.0259 S13: -0.4874 REMARK 3 S21: 0.0741 S22: -0.0993 S23: -0.4491 REMARK 3 S31: 0.1099 S32: 0.1338 S33: 0.1001 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 93 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0630 33.3340 38.5620 REMARK 3 T TENSOR REMARK 3 T11: 0.0816 T22: 0.0816 REMARK 3 T33: 0.0965 T12: 0.0128 REMARK 3 T13: -0.0090 T23: -0.0400 REMARK 3 L TENSOR REMARK 3 L11: 2.6130 L22: 2.5415 REMARK 3 L33: 2.6168 L12: 1.1676 REMARK 3 L13: 1.3008 L23: 0.9187 REMARK 3 S TENSOR REMARK 3 S11: -0.0597 S12: 0.1235 S13: -0.0453 REMARK 3 S21: -0.2423 S22: -0.0833 S23: 0.3090 REMARK 3 S31: -0.0634 S32: -0.1837 S33: 0.1431 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 21 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8280 36.9310 59.2180 REMARK 3 T TENSOR REMARK 3 T11: 0.1191 T22: 0.1484 REMARK 3 T33: 0.0376 T12: 0.0403 REMARK 3 T13: 0.0056 T23: -0.0248 REMARK 3 L TENSOR REMARK 3 L11: 15.4964 L22: 15.4058 REMARK 3 L33: 3.7337 L12: 8.1027 REMARK 3 L13: -6.9119 L23: -0.9248 REMARK 3 S TENSOR REMARK 3 S11: -0.0723 S12: -0.3287 S13: -0.0734 REMARK 3 S21: 0.5001 S22: 0.0432 S23: -0.0637 REMARK 3 S31: 0.1492 S32: 0.1803 S33: 0.0291 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 22 B 35 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5980 28.3470 58.1550 REMARK 3 T TENSOR REMARK 3 T11: 0.0761 T22: 0.0828 REMARK 3 T33: 0.0548 T12: -0.0139 REMARK 3 T13: 0.0271 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 3.4893 L22: 10.7814 REMARK 3 L33: 1.4566 L12: -2.9612 REMARK 3 L13: 0.5593 L23: -0.6992 REMARK 3 S TENSOR REMARK 3 S11: 0.1430 S12: -0.1214 S13: -0.3020 REMARK 3 S21: -0.2578 S22: -0.1763 S23: 0.1731 REMARK 3 S31: 0.1914 S32: -0.0599 S33: 0.0333 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 41 B 54 REMARK 3 ORIGIN FOR THE GROUP (A): 16.4410 26.4460 61.2250 REMARK 3 T TENSOR REMARK 3 T11: 0.0695 T22: 0.0966 REMARK 3 T33: 0.0304 T12: -0.0327 REMARK 3 T13: -0.0023 T23: 0.0369 REMARK 3 L TENSOR REMARK 3 L11: 7.5226 L22: 19.1506 REMARK 3 L33: 3.3155 L12: -7.2338 REMARK 3 L13: -0.8323 L23: -0.3434 REMARK 3 S TENSOR REMARK 3 S11: 0.0224 S12: -0.1242 S13: -0.3686 REMARK 3 S21: -0.4575 S22: -0.0725 S23: 0.1387 REMARK 3 S31: 0.2003 S32: -0.0667 S33: 0.0500 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 55 B 74 REMARK 3 ORIGIN FOR THE GROUP (A): 24.2770 24.3700 61.6360 REMARK 3 T TENSOR REMARK 3 T11: 0.1024 T22: 0.0643 REMARK 3 T33: 0.0990 T12: -0.0166 REMARK 3 T13: 0.0130 T23: 0.0618 REMARK 3 L TENSOR REMARK 3 L11: 6.5929 L22: 2.6542 REMARK 3 L33: 1.9420 L12: -3.1976 REMARK 3 L13: 1.5136 L23: -1.2805 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: -0.2148 S13: -0.1543 REMARK 3 S21: 0.1408 S22: -0.1210 S23: -0.0541 REMARK 3 S31: 0.2543 S32: 0.1018 S33: 0.1011 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 75 B 92 REMARK 3 ORIGIN FOR THE GROUP (A): 8.1510 32.1940 48.6580 REMARK 3 T TENSOR REMARK 3 T11: 0.0300 T22: 0.0324 REMARK 3 T33: 0.1318 T12: -0.0073 REMARK 3 T13: -0.0450 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 2.1697 L22: 2.8001 REMARK 3 L33: 6.9357 L12: 0.1172 REMARK 3 L13: -2.2359 L23: 0.6761 REMARK 3 S TENSOR REMARK 3 S11: -0.0288 S12: -0.0660 S13: -0.1517 REMARK 3 S21: -0.1244 S22: -0.0377 S23: 0.4640 REMARK 3 S31: 0.2112 S32: -0.0548 S33: 0.0665 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 93 B 122 REMARK 3 ORIGIN FOR THE GROUP (A): 24.4820 33.5750 55.0620 REMARK 3 T TENSOR REMARK 3 T11: 0.0546 T22: 0.1039 REMARK 3 T33: 0.0814 T12: -0.0189 REMARK 3 T13: -0.0033 T23: 0.0388 REMARK 3 L TENSOR REMARK 3 L11: 3.5655 L22: 3.2429 REMARK 3 L33: 2.8481 L12: -1.2215 REMARK 3 L13: 1.7108 L23: -1.4493 REMARK 3 S TENSOR REMARK 3 S11: -0.0572 S12: -0.1883 S13: -0.1077 REMARK 3 S21: 0.2970 S22: -0.1420 S23: -0.2905 REMARK 3 S31: -0.0746 S32: 0.2713 S33: 0.1992 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IPB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054695. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20908 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 38.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25- 32% V/V PEG550-MONOMETHYL ETHER, REMARK 280 70 MM NAAC BUFFER PH 4-5 AND 100 MM NACL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K, PH 4.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 21.47900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.34050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.47900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.34050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 42.95800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 84.68100 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CAY JZD A 128 LIES ON A SPECIAL POSITION. REMARK 375 CBC JZD A 128 LIES ON A SPECIAL POSITION. REMARK 375 CBW JZD A 128 LIES ON A SPECIAL POSITION. REMARK 375 CAX JZD B 129 LIES ON A SPECIAL POSITION. REMARK 375 CBB JZD B 129 LIES ON A SPECIAL POSITION. REMARK 375 CBE JZD B 129 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 PRO A 125 REMARK 465 LYS A 126 REMARK 465 GLU A 127 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 GLU B 7 REMARK 465 SER B 8 REMARK 465 LYS B 9 REMARK 465 PRO B 125 REMARK 465 LYS B 126 REMARK 465 GLU B 127 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ALA B 36 REMARK 475 ALA B 37 REMARK 475 ASP B 38 REMARK 475 ASP B 39 REMARK 475 THR B 40 REMARK 475 GLY B 101 REMARK 475 PRO B 102 REMARK 475 ARG B 103 REMARK 475 ARG B 104 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU B 54 CAK JZD A 128 2665 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE JZD A 128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE JZD B 129 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3IPE RELATED DB: PDB REMARK 900 HUMAN TRANSTHYRETIN (TTR) COMPLEXED WITH A PALINDROMIC BIVALENT REMARK 900 AMYLOID INHIBITOR (7 CARBON LINKER). REMARK 900 RELATED ID: 3IPG RELATED DB: PDB REMARK 900 HUMAN TRANSTHYRETIN (TTR) COMPLEXED WITH 2-(3,5-DICHLOROPHENYLAMINO) REMARK 900 -5-METHOXYBENZOIC ACID DBREF 3IPB A 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 3IPB B 1 127 UNP P02766 TTHY_HUMAN 21 147 SEQRES 1 A 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 A 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 A 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 A 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 A 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 A 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 A 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 A 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 A 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 A 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 B 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 B 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 B 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 B 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 B 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 B 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 B 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 B 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 B 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 B 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU HET JZD A 128 49 HET JZD B 129 49 HETNAM JZD 2,2'-{UNDECANE-1,11-DIYLBIS[OXY(3,5-DICHLOROBENZENE-4, HETNAM 2 JZD 1-DIYL)IMINO]}DIBENZOIC ACID FORMUL 3 JZD 2(C37 H38 CL4 N2 O6) FORMUL 5 HOH *61(H2 O) HELIX 1 1 ASP A 74 LEU A 82 1 9 HELIX 2 2 ASP B 74 LEU B 82 1 9 SHEET 1 A 8 SER A 23 PRO A 24 0 SHEET 2 A 8 LEU A 12 ASP A 18 -1 N ASP A 18 O SER A 23 SHEET 3 A 8 ARG A 104 SER A 112 1 O ILE A 107 N MET A 13 SHEET 4 A 8 SER A 115 THR A 123 -1 O SER A 115 N SER A 112 SHEET 5 A 8 SER B 115 THR B 123 -1 O TYR B 116 N THR A 118 SHEET 6 A 8 ARG B 104 SER B 112 -1 N ARG B 104 O THR B 123 SHEET 7 A 8 LEU B 12 ASP B 18 1 N MET B 13 O ILE B 107 SHEET 8 A 8 SER B 23 PRO B 24 -1 O SER B 23 N ASP B 18 SHEET 1 B 8 GLU A 54 LEU A 55 0 SHEET 2 B 8 LEU A 12 ASP A 18 -1 N VAL A 14 O LEU A 55 SHEET 3 B 8 ARG A 104 SER A 112 1 O ILE A 107 N MET A 13 SHEET 4 B 8 SER A 115 THR A 123 -1 O SER A 115 N SER A 112 SHEET 5 B 8 SER B 115 THR B 123 -1 O TYR B 116 N THR A 118 SHEET 6 B 8 ARG B 104 SER B 112 -1 N ARG B 104 O THR B 123 SHEET 7 B 8 LEU B 12 ASP B 18 1 N MET B 13 O ILE B 107 SHEET 8 B 8 GLU B 54 LEU B 55 -1 O LEU B 55 N VAL B 14 SHEET 1 C 8 TRP A 41 LYS A 48 0 SHEET 2 C 8 ALA A 29 LYS A 35 -1 N VAL A 32 O ALA A 45 SHEET 3 C 8 GLY A 67 ILE A 73 -1 O GLU A 72 N HIS A 31 SHEET 4 C 8 HIS A 88 ALA A 97 -1 O ALA A 91 N ILE A 73 SHEET 5 C 8 HIS B 88 ALA B 97 -1 O GLU B 89 N VAL A 94 SHEET 6 C 8 GLY B 67 ILE B 73 -1 N TYR B 69 O PHE B 95 SHEET 7 C 8 ALA B 29 LYS B 35 -1 N HIS B 31 O GLU B 72 SHEET 8 C 8 TRP B 41 LYS B 48 -1 O ALA B 45 N VAL B 32 SITE 1 AC1 12 LYS A 15 LEU A 17 ALA A 108 LEU A 110 SITE 2 AC1 12 SER A 117 THR A 119 LYS B 15 LEU B 17 SITE 3 AC1 12 GLU B 54 ALA B 108 LEU B 110 SER B 117 SITE 1 AC2 14 LYS A 15 LEU A 17 GLU A 54 ALA A 108 SITE 2 AC2 14 LEU A 110 SER A 117 LYS B 15 LEU B 17 SITE 3 AC2 14 ALA B 108 LEU B 110 SER B 117 THR B 118 SITE 4 AC2 14 THR B 119 VAL B 121 CRYST1 42.958 84.681 62.769 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023279 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011809 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015931 0.00000