data_3IPX # _entry.id 3IPX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3IPX pdb_00003ipx 10.2210/pdb3ipx/pdb RCSB RCSB054717 ? ? WWPDB D_1000054717 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3IPY _pdbx_database_related.details 'X-Ray structure of Human Deoxycytidine Kinase in complex with an inhibitor' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3IPX _pdbx_database_status.recvd_initial_deposition_date 2009-08-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tari, L.W.' 1 'Swanson, R.V.' 2 'Hunter, M.' 3 'Hoffman, I.' 4 'Stouch, T.R.' 5 'Carson, K.G.' 6 # _citation.id primary _citation.title 'Lead optimization and structure-based design of potent and bioavailable deoxycytidine kinase inhibitors.' _citation.journal_abbrev Bioorg.Med.Chem.Lett. _citation.journal_volume 19 _citation.page_first 6784 _citation.page_last 6787 _citation.year 2009 _citation.journal_id_ASTM BMCLE8 _citation.country UK _citation.journal_id_ISSN 0960-894X _citation.journal_id_CSD 1127 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19836232 _citation.pdbx_database_id_DOI 10.1016/j.bmcl.2009.09.081 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jessop, T.C.' 1 ? primary 'Tarver, J.E.' 2 ? primary 'Carlsen, M.' 3 ? primary 'Xu, A.' 4 ? primary 'Healy, J.P.' 5 ? primary 'Heim-Riether, A.' 6 ? primary 'Fu, Q.' 7 ? primary 'Taylor, J.A.' 8 ? primary 'Augeri, D.J.' 9 ? primary 'Shen, M.' 10 ? primary 'Stouch, T.R.' 11 ? primary 'Swanson, R.V.' 12 ? primary 'Tari, L.W.' 13 ? primary 'Hunter, M.' 14 ? primary 'Hoffman, I.' 15 ? primary 'Keyes, P.E.' 16 ? primary 'Yu, X.C.' 17 ? primary 'Miranda, M.' 18 ? primary 'Liu, Q.' 19 ? primary 'Swaffield, J.C.' 20 ? primary 'David Kimball, S.' 21 ? primary 'Nouraldeen, A.' 22 ? primary 'Wilson, A.G.' 23 ? primary 'Foushee, A.M.' 24 ? primary 'Jhaver, K.' 25 ? primary 'Finch, R.' 26 ? primary 'Anderson, S.' 27 ? primary 'Oravecz, T.' 28 ? primary 'Carson, K.G.' 29 ? # _cell.entry_id 3IPX _cell.length_a 80.238 _cell.length_b 80.238 _cell.length_c 93.950 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3IPX _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Deoxycytidine kinase' 28627.363 1 2.7.1.74 ? ? ? 2 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 1 ? ? ? ? 3 non-polymer syn "2'-deoxy-5-fluorocytidine" 245.208 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 water nat water 18.015 172 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name dCK # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTY ACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQ ATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLST L ; _entity_poly.pdbx_seq_one_letter_code_can ;RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTY ACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQ ATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLST L ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 ILE n 1 3 LYS n 1 4 LYS n 1 5 ILE n 1 6 SER n 1 7 ILE n 1 8 GLU n 1 9 GLY n 1 10 ASN n 1 11 ILE n 1 12 ALA n 1 13 ALA n 1 14 GLY n 1 15 LYS n 1 16 SER n 1 17 THR n 1 18 PHE n 1 19 VAL n 1 20 ASN n 1 21 ILE n 1 22 LEU n 1 23 LYS n 1 24 GLN n 1 25 LEU n 1 26 CYS n 1 27 GLU n 1 28 ASP n 1 29 TRP n 1 30 GLU n 1 31 VAL n 1 32 VAL n 1 33 PRO n 1 34 GLU n 1 35 PRO n 1 36 VAL n 1 37 ALA n 1 38 ARG n 1 39 TRP n 1 40 CYS n 1 41 ASN n 1 42 VAL n 1 43 GLN n 1 44 SER n 1 45 THR n 1 46 GLN n 1 47 ASP n 1 48 GLU n 1 49 PHE n 1 50 GLU n 1 51 GLU n 1 52 LEU n 1 53 THR n 1 54 MET n 1 55 SER n 1 56 GLN n 1 57 LYS n 1 58 ASN n 1 59 GLY n 1 60 GLY n 1 61 ASN n 1 62 VAL n 1 63 LEU n 1 64 GLN n 1 65 MET n 1 66 MET n 1 67 TYR n 1 68 GLU n 1 69 LYS n 1 70 PRO n 1 71 GLU n 1 72 ARG n 1 73 TRP n 1 74 SER n 1 75 PHE n 1 76 THR n 1 77 PHE n 1 78 GLN n 1 79 THR n 1 80 TYR n 1 81 ALA n 1 82 CYS n 1 83 LEU n 1 84 SER n 1 85 ARG n 1 86 ILE n 1 87 ARG n 1 88 ALA n 1 89 GLN n 1 90 LEU n 1 91 ALA n 1 92 SER n 1 93 LEU n 1 94 ASN n 1 95 GLY n 1 96 LYS n 1 97 LEU n 1 98 LYS n 1 99 ASP n 1 100 ALA n 1 101 GLU n 1 102 LYS n 1 103 PRO n 1 104 VAL n 1 105 LEU n 1 106 PHE n 1 107 PHE n 1 108 GLU n 1 109 ARG n 1 110 SER n 1 111 VAL n 1 112 TYR n 1 113 SER n 1 114 ASP n 1 115 ARG n 1 116 TYR n 1 117 ILE n 1 118 PHE n 1 119 ALA n 1 120 SER n 1 121 ASN n 1 122 LEU n 1 123 TYR n 1 124 GLU n 1 125 SER n 1 126 GLU n 1 127 CYS n 1 128 MET n 1 129 ASN n 1 130 GLU n 1 131 THR n 1 132 GLU n 1 133 TRP n 1 134 THR n 1 135 ILE n 1 136 TYR n 1 137 GLN n 1 138 ASP n 1 139 TRP n 1 140 HIS n 1 141 ASP n 1 142 TRP n 1 143 MET n 1 144 ASN n 1 145 ASN n 1 146 GLN n 1 147 PHE n 1 148 GLY n 1 149 GLN n 1 150 SER n 1 151 LEU n 1 152 GLU n 1 153 LEU n 1 154 ASP n 1 155 GLY n 1 156 ILE n 1 157 ILE n 1 158 TYR n 1 159 LEU n 1 160 GLN n 1 161 ALA n 1 162 THR n 1 163 PRO n 1 164 GLU n 1 165 THR n 1 166 CYS n 1 167 LEU n 1 168 HIS n 1 169 ARG n 1 170 ILE n 1 171 TYR n 1 172 LEU n 1 173 ARG n 1 174 GLY n 1 175 ARG n 1 176 ASN n 1 177 GLU n 1 178 GLU n 1 179 GLN n 1 180 GLY n 1 181 ILE n 1 182 PRO n 1 183 LEU n 1 184 GLU n 1 185 TYR n 1 186 LEU n 1 187 GLU n 1 188 LYS n 1 189 LEU n 1 190 HIS n 1 191 TYR n 1 192 LYS n 1 193 HIS n 1 194 GLU n 1 195 SER n 1 196 TRP n 1 197 LEU n 1 198 LEU n 1 199 HIS n 1 200 ARG n 1 201 THR n 1 202 LEU n 1 203 LYS n 1 204 THR n 1 205 ASN n 1 206 PHE n 1 207 ASP n 1 208 TYR n 1 209 LEU n 1 210 GLN n 1 211 GLU n 1 212 VAL n 1 213 PRO n 1 214 ILE n 1 215 LEU n 1 216 THR n 1 217 LEU n 1 218 ASP n 1 219 VAL n 1 220 ASN n 1 221 GLU n 1 222 ASP n 1 223 PHE n 1 224 LYS n 1 225 ASP n 1 226 LYS n 1 227 TYR n 1 228 GLU n 1 229 SER n 1 230 LEU n 1 231 VAL n 1 232 GLU n 1 233 LYS n 1 234 VAL n 1 235 LYS n 1 236 GLU n 1 237 PHE n 1 238 LEU n 1 239 SER n 1 240 THR n 1 241 LEU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Homo sapiens' _entity_src_nat.pdbx_ncbi_taxonomy_id 9606 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DCK_HUMAN _struct_ref.pdbx_db_accession P27707 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTY ACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQ ATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLST L ; _struct_ref.pdbx_align_begin 20 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3IPX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 241 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P27707 _struct_ref_seq.db_align_beg 20 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 260 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 20 _struct_ref_seq.pdbx_auth_seq_align_end 260 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 B86 non-polymer . "2'-deoxy-5-fluorocytidine" ? 'C9 H12 F N3 O4' 245.208 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3IPX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.65 _exptl_crystal.density_percent_sol 53.57 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details '0.1 M sodium acetate, 25% PEG 4000, 8% isopropanol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type NOIR-1 _diffrn_detector.pdbx_collection_date 2004-05-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.12 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 4.2.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 4.2.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.12 # _reflns.entry_id 3IPX _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 60.97 _reflns.d_resolution_high 2.00 _reflns.number_obs 19463 _reflns.number_all 19463 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 3IPX _refine.ls_number_reflns_obs 19463 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 60.97 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 96.13 _refine.ls_R_factor_obs 0.22322 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22030 _refine.ls_R_factor_R_free 0.27795 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1056 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.940 _refine.B_iso_mean 48.185 _refine.aniso_B[1][1] 1.61 _refine.aniso_B[2][2] 1.61 _refine.aniso_B[3][3] -3.22 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 1P60 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.199 _refine.pdbx_overall_ESU_R_Free 0.189 _refine.overall_SU_ML 0.198 _refine.overall_SU_B 7.835 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1908 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 45 _refine_hist.number_atoms_solvent 172 _refine_hist.number_atoms_total 2125 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 60.97 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.022 ? 1989 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.349 1.972 ? 2700 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.311 5.000 ? 227 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 41.548 24.653 ? 101 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.678 15.000 ? 341 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.723 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.089 0.200 ? 285 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1509 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.204 0.200 ? 845 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.309 0.200 ? 1353 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.157 0.200 ? 130 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.256 0.200 ? 47 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.312 0.200 ? 11 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.753 1.500 ? 1169 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.347 2.000 ? 1844 'X-RAY DIFFRACTION' ? r_scbond_it 1.634 3.000 ? 966 'X-RAY DIFFRACTION' ? r_scangle_it 2.598 4.500 ? 856 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.number_reflns_R_work 1091 _refine_ls_shell.R_factor_R_work 0.446 _refine_ls_shell.percent_reflns_obs 75.49 _refine_ls_shell.R_factor_R_free 0.470 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 67 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3IPX _struct.title 'X-Ray structure of Human Deoxycytidine Kinase in complex with ADP and an inhibitor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3IPX _struct_keywords.pdbx_keywords 'TRANSFERASE/TRANSFERASE INHIBITOR' _struct_keywords.text 'Human Deoxycytidine Kinase, ATP-binding, Kinase, Nucleotide-binding, TRANSFERASE-TRANSFERASE INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 14 ? LYS A 23 ? GLY A 33 LYS A 42 1 ? 10 HELX_P HELX_P2 2 GLN A 24 ? CYS A 26 ? GLN A 43 CYS A 45 5 ? 3 HELX_P HELX_P3 3 PRO A 35 ? CYS A 40 ? PRO A 54 CYS A 59 1 ? 6 HELX_P HELX_P4 4 ASN A 61 ? LYS A 69 ? ASN A 80 LYS A 88 1 ? 9 HELX_P HELX_P5 5 LYS A 69 ? ASN A 94 ? LYS A 88 ASN A 113 1 ? 26 HELX_P HELX_P6 6 SER A 110 ? ILE A 117 ? SER A 129 ILE A 136 1 ? 8 HELX_P HELX_P7 7 ILE A 117 ? SER A 125 ? ILE A 136 SER A 144 1 ? 9 HELX_P HELX_P8 8 ASN A 129 ? GLY A 148 ? ASN A 148 GLY A 167 1 ? 20 HELX_P HELX_P9 9 GLN A 149 ? GLU A 152 ? GLN A 168 GLU A 171 5 ? 4 HELX_P HELX_P10 10 THR A 162 ? GLY A 174 ? THR A 181 GLY A 193 1 ? 13 HELX_P HELX_P11 11 ARG A 175 ? GLN A 179 ? ARG A 194 GLN A 198 5 ? 5 HELX_P HELX_P12 12 PRO A 182 ? LEU A 198 ? PRO A 201 LEU A 217 1 ? 17 HELX_P HELX_P13 13 PHE A 206 ? GLU A 211 ? PHE A 225 GLU A 230 5 ? 6 HELX_P HELX_P14 14 ASP A 222 ? THR A 240 ? ASP A 241 THR A 259 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A SER 16 OG ? ? ? 1_555 D MG . MG ? ? A SER 35 A MG 263 1_555 ? ? ? ? ? ? ? 2.694 ? ? metalc2 metalc ? ? A GLU 108 OE1 ? ? ? 1_555 D MG . MG ? ? A GLU 127 A MG 263 1_555 ? ? ? ? ? ? ? 2.485 ? ? metalc3 metalc ? ? B ADP . O2B ? ? ? 1_555 D MG . MG ? ? A ADP 261 A MG 263 1_555 ? ? ? ? ? ? ? 2.468 ? ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 263 A HOH 264 1_555 ? ? ? ? ? ? ? 2.412 ? ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 263 A HOH 265 1_555 ? ? ? ? ? ? ? 2.182 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 29 ? VAL A 32 ? TRP A 48 VAL A 51 A 2 VAL A 104 ? GLU A 108 ? VAL A 123 GLU A 127 A 3 LYS A 3 ? GLY A 9 ? LYS A 22 GLY A 28 A 4 GLY A 155 ? GLN A 160 ? GLY A 174 GLN A 179 A 5 ILE A 214 ? ASP A 218 ? ILE A 233 ASP A 237 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 32 ? N VAL A 51 O PHE A 106 ? O PHE A 125 A 2 3 O LEU A 105 ? O LEU A 124 N LYS A 3 ? N LYS A 22 A 3 4 N GLU A 8 ? N GLU A 27 O LEU A 159 ? O LEU A 178 A 4 5 N TYR A 158 ? N TYR A 177 O LEU A 215 ? O LEU A 234 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ADP 261 ? 21 'BINDING SITE FOR RESIDUE ADP A 261' AC2 Software A B86 262 ? 14 'BINDING SITE FOR RESIDUE B86 A 262' AC3 Software A MG 263 ? 5 'BINDING SITE FOR RESIDUE MG A 263' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 21 ALA A 12 ? ALA A 31 . ? 1_555 ? 2 AC1 21 ALA A 13 ? ALA A 32 . ? 1_555 ? 3 AC1 21 GLY A 14 ? GLY A 33 . ? 1_555 ? 4 AC1 21 LYS A 15 ? LYS A 34 . ? 1_555 ? 5 AC1 21 SER A 16 ? SER A 35 . ? 1_555 ? 6 AC1 21 THR A 17 ? THR A 36 . ? 1_555 ? 7 AC1 21 ARG A 169 ? ARG A 188 . ? 1_555 ? 8 AC1 21 LEU A 172 ? LEU A 191 . ? 1_555 ? 9 AC1 21 ARG A 173 ? ARG A 192 . ? 1_555 ? 10 AC1 21 TYR A 191 ? TYR A 210 . ? 4_555 ? 11 AC1 21 GLU A 194 ? GLU A 213 . ? 4_555 ? 12 AC1 21 GLU A 221 ? GLU A 240 . ? 1_555 ? 13 AC1 21 ASP A 222 ? ASP A 241 . ? 1_555 ? 14 AC1 21 PHE A 223 ? PHE A 242 . ? 1_555 ? 15 AC1 21 MG D . ? MG A 263 . ? 1_555 ? 16 AC1 21 HOH E . ? HOH A 267 . ? 1_555 ? 17 AC1 21 HOH E . ? HOH A 273 . ? 1_555 ? 18 AC1 21 HOH E . ? HOH A 281 . ? 4_555 ? 19 AC1 21 HOH E . ? HOH A 285 . ? 1_555 ? 20 AC1 21 HOH E . ? HOH A 422 . ? 1_555 ? 21 AC1 21 HOH E . ? HOH A 423 . ? 1_555 ? 22 AC2 14 ILE A 11 ? ILE A 30 . ? 1_555 ? 23 AC2 14 GLU A 34 ? GLU A 53 . ? 1_555 ? 24 AC2 14 VAL A 36 ? VAL A 55 . ? 1_555 ? 25 AC2 14 LEU A 63 ? LEU A 82 . ? 1_555 ? 26 AC2 14 MET A 66 ? MET A 85 . ? 1_555 ? 27 AC2 14 TYR A 67 ? TYR A 86 . ? 1_555 ? 28 AC2 14 PHE A 77 ? PHE A 96 . ? 1_555 ? 29 AC2 14 GLN A 78 ? GLN A 97 . ? 1_555 ? 30 AC2 14 ARG A 85 ? ARG A 104 . ? 1_555 ? 31 AC2 14 ARG A 109 ? ARG A 128 . ? 1_555 ? 32 AC2 14 ASP A 114 ? ASP A 133 . ? 1_555 ? 33 AC2 14 PHE A 118 ? PHE A 137 . ? 1_555 ? 34 AC2 14 GLU A 178 ? GLU A 197 . ? 1_555 ? 35 AC2 14 HOH E . ? HOH A 412 . ? 1_555 ? 36 AC3 5 SER A 16 ? SER A 35 . ? 1_555 ? 37 AC3 5 GLU A 108 ? GLU A 127 . ? 1_555 ? 38 AC3 5 ADP B . ? ADP A 261 . ? 1_555 ? 39 AC3 5 HOH E . ? HOH A 264 . ? 1_555 ? 40 AC3 5 HOH E . ? HOH A 265 . ? 1_555 ? # _database_PDB_matrix.entry_id 3IPX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3IPX _atom_sites.fract_transf_matrix[1][1] 0.012463 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012463 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010644 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 20 20 ARG ARG A . n A 1 2 ILE 2 21 21 ILE ILE A . n A 1 3 LYS 3 22 22 LYS LYS A . n A 1 4 LYS 4 23 23 LYS LYS A . n A 1 5 ILE 5 24 24 ILE ILE A . n A 1 6 SER 6 25 25 SER SER A . n A 1 7 ILE 7 26 26 ILE ILE A . n A 1 8 GLU 8 27 27 GLU GLU A . n A 1 9 GLY 9 28 28 GLY GLY A . n A 1 10 ASN 10 29 29 ASN ASN A . n A 1 11 ILE 11 30 30 ILE ILE A . n A 1 12 ALA 12 31 31 ALA ALA A . n A 1 13 ALA 13 32 32 ALA ALA A . n A 1 14 GLY 14 33 33 GLY GLY A . n A 1 15 LYS 15 34 34 LYS LYS A . n A 1 16 SER 16 35 35 SER SER A . n A 1 17 THR 17 36 36 THR THR A . n A 1 18 PHE 18 37 37 PHE PHE A . n A 1 19 VAL 19 38 38 VAL VAL A . n A 1 20 ASN 20 39 39 ASN ASN A . n A 1 21 ILE 21 40 40 ILE ILE A . n A 1 22 LEU 22 41 41 LEU LEU A . n A 1 23 LYS 23 42 42 LYS LYS A . n A 1 24 GLN 24 43 43 GLN GLN A . n A 1 25 LEU 25 44 44 LEU LEU A . n A 1 26 CYS 26 45 45 CYS CYS A . n A 1 27 GLU 27 46 46 GLU GLU A . n A 1 28 ASP 28 47 47 ASP ASP A . n A 1 29 TRP 29 48 48 TRP TRP A . n A 1 30 GLU 30 49 49 GLU GLU A . n A 1 31 VAL 31 50 50 VAL VAL A . n A 1 32 VAL 32 51 51 VAL VAL A . n A 1 33 PRO 33 52 52 PRO PRO A . n A 1 34 GLU 34 53 53 GLU GLU A . n A 1 35 PRO 35 54 54 PRO PRO A . n A 1 36 VAL 36 55 55 VAL VAL A . n A 1 37 ALA 37 56 56 ALA ALA A . n A 1 38 ARG 38 57 57 ARG ARG A . n A 1 39 TRP 39 58 58 TRP TRP A . n A 1 40 CYS 40 59 59 CYS CYS A . n A 1 41 ASN 41 60 60 ASN ASN A . n A 1 42 VAL 42 61 61 VAL VAL A . n A 1 43 GLN 43 62 62 GLN GLN A . n A 1 44 SER 44 63 63 SER SER A . n A 1 45 THR 45 64 64 THR THR A . n A 1 46 GLN 46 65 ? ? ? A . n A 1 47 ASP 47 66 ? ? ? A . n A 1 48 GLU 48 67 ? ? ? A . n A 1 49 PHE 49 68 ? ? ? A . n A 1 50 GLU 50 69 ? ? ? A . n A 1 51 GLU 51 70 ? ? ? A . n A 1 52 LEU 52 71 ? ? ? A . n A 1 53 THR 53 72 ? ? ? A . n A 1 54 MET 54 73 ? ? ? A . n A 1 55 SER 55 74 ? ? ? A . n A 1 56 GLN 56 75 ? ? ? A . n A 1 57 LYS 57 76 ? ? ? A . n A 1 58 ASN 58 77 77 ASN ASN A . n A 1 59 GLY 59 78 78 GLY GLY A . n A 1 60 GLY 60 79 79 GLY GLY A . n A 1 61 ASN 61 80 80 ASN ASN A . n A 1 62 VAL 62 81 81 VAL VAL A . n A 1 63 LEU 63 82 82 LEU LEU A . n A 1 64 GLN 64 83 83 GLN GLN A . n A 1 65 MET 65 84 84 MET MET A . n A 1 66 MET 66 85 85 MET MET A . n A 1 67 TYR 67 86 86 TYR TYR A . n A 1 68 GLU 68 87 87 GLU GLU A . n A 1 69 LYS 69 88 88 LYS LYS A . n A 1 70 PRO 70 89 89 PRO PRO A . n A 1 71 GLU 71 90 90 GLU GLU A . n A 1 72 ARG 72 91 91 ARG ARG A . n A 1 73 TRP 73 92 92 TRP TRP A . n A 1 74 SER 74 93 93 SER SER A . n A 1 75 PHE 75 94 94 PHE PHE A . n A 1 76 THR 76 95 95 THR THR A . n A 1 77 PHE 77 96 96 PHE PHE A . n A 1 78 GLN 78 97 97 GLN GLN A . n A 1 79 THR 79 98 98 THR THR A . n A 1 80 TYR 80 99 99 TYR TYR A . n A 1 81 ALA 81 100 100 ALA ALA A . n A 1 82 CYS 82 101 101 CYS CYS A . n A 1 83 LEU 83 102 102 LEU LEU A . n A 1 84 SER 84 103 103 SER SER A . n A 1 85 ARG 85 104 104 ARG ARG A . n A 1 86 ILE 86 105 105 ILE ILE A . n A 1 87 ARG 87 106 106 ARG ARG A . n A 1 88 ALA 88 107 107 ALA ALA A . n A 1 89 GLN 89 108 108 GLN GLN A . n A 1 90 LEU 90 109 109 LEU LEU A . n A 1 91 ALA 91 110 110 ALA ALA A . n A 1 92 SER 92 111 111 SER SER A . n A 1 93 LEU 93 112 112 LEU LEU A . n A 1 94 ASN 94 113 113 ASN ASN A . n A 1 95 GLY 95 114 114 GLY GLY A . n A 1 96 LYS 96 115 115 LYS GLY A . n A 1 97 LEU 97 116 116 LEU LEU A . n A 1 98 LYS 98 117 117 LYS LYS A . n A 1 99 ASP 99 118 118 ASP ASP A . n A 1 100 ALA 100 119 119 ALA GLY A . n A 1 101 GLU 101 120 120 GLU GLU A . n A 1 102 LYS 102 121 121 LYS LYS A . n A 1 103 PRO 103 122 122 PRO PRO A . n A 1 104 VAL 104 123 123 VAL VAL A . n A 1 105 LEU 105 124 124 LEU LEU A . n A 1 106 PHE 106 125 125 PHE PHE A . n A 1 107 PHE 107 126 126 PHE PHE A . n A 1 108 GLU 108 127 127 GLU GLU A . n A 1 109 ARG 109 128 128 ARG ARG A . n A 1 110 SER 110 129 129 SER SER A . n A 1 111 VAL 111 130 130 VAL VAL A . n A 1 112 TYR 112 131 131 TYR TYR A . n A 1 113 SER 113 132 132 SER SER A . n A 1 114 ASP 114 133 133 ASP ASP A . n A 1 115 ARG 115 134 134 ARG ARG A . n A 1 116 TYR 116 135 135 TYR TYR A . n A 1 117 ILE 117 136 136 ILE ILE A . n A 1 118 PHE 118 137 137 PHE PHE A . n A 1 119 ALA 119 138 138 ALA ALA A . n A 1 120 SER 120 139 139 SER SER A . n A 1 121 ASN 121 140 140 ASN ASN A . n A 1 122 LEU 122 141 141 LEU LEU A . n A 1 123 TYR 123 142 142 TYR TYR A . n A 1 124 GLU 124 143 143 GLU GLU A . n A 1 125 SER 125 144 144 SER SER A . n A 1 126 GLU 126 145 145 GLU GLU A . n A 1 127 CYS 127 146 146 CYS CYS A . n A 1 128 MET 128 147 147 MET MET A . n A 1 129 ASN 129 148 148 ASN ASN A . n A 1 130 GLU 130 149 149 GLU GLU A . n A 1 131 THR 131 150 150 THR THR A . n A 1 132 GLU 132 151 151 GLU GLU A . n A 1 133 TRP 133 152 152 TRP TRP A . n A 1 134 THR 134 153 153 THR THR A . n A 1 135 ILE 135 154 154 ILE ILE A . n A 1 136 TYR 136 155 155 TYR TYR A . n A 1 137 GLN 137 156 156 GLN GLN A . n A 1 138 ASP 138 157 157 ASP ASP A . n A 1 139 TRP 139 158 158 TRP TRP A . n A 1 140 HIS 140 159 159 HIS HIS A . n A 1 141 ASP 141 160 160 ASP ASP A . n A 1 142 TRP 142 161 161 TRP TRP A . n A 1 143 MET 143 162 162 MET MET A . n A 1 144 ASN 144 163 163 ASN ASN A . n A 1 145 ASN 145 164 164 ASN ASN A . n A 1 146 GLN 146 165 165 GLN GLN A . n A 1 147 PHE 147 166 166 PHE PHE A . n A 1 148 GLY 148 167 167 GLY GLY A . n A 1 149 GLN 149 168 168 GLN GLN A . n A 1 150 SER 150 169 169 SER SER A . n A 1 151 LEU 151 170 170 LEU LEU A . n A 1 152 GLU 152 171 171 GLU GLU A . n A 1 153 LEU 153 172 172 LEU LEU A . n A 1 154 ASP 154 173 173 ASP ASP A . n A 1 155 GLY 155 174 174 GLY GLY A . n A 1 156 ILE 156 175 175 ILE ILE A . n A 1 157 ILE 157 176 176 ILE ILE A . n A 1 158 TYR 158 177 177 TYR TYR A . n A 1 159 LEU 159 178 178 LEU LEU A . n A 1 160 GLN 160 179 179 GLN GLN A . n A 1 161 ALA 161 180 180 ALA ALA A . n A 1 162 THR 162 181 181 THR THR A . n A 1 163 PRO 163 182 182 PRO PRO A . n A 1 164 GLU 164 183 183 GLU GLU A . n A 1 165 THR 165 184 184 THR THR A . n A 1 166 CYS 166 185 185 CYS CYS A . n A 1 167 LEU 167 186 186 LEU LEU A . n A 1 168 HIS 168 187 187 HIS HIS A . n A 1 169 ARG 169 188 188 ARG ARG A . n A 1 170 ILE 170 189 189 ILE ILE A . n A 1 171 TYR 171 190 190 TYR TYR A . n A 1 172 LEU 172 191 191 LEU LEU A . n A 1 173 ARG 173 192 192 ARG ARG A . n A 1 174 GLY 174 193 193 GLY GLY A . n A 1 175 ARG 175 194 194 ARG ARG A . n A 1 176 ASN 176 195 195 ASN ASN A . n A 1 177 GLU 177 196 196 GLU GLU A . n A 1 178 GLU 178 197 197 GLU GLU A . n A 1 179 GLN 179 198 198 GLN GLN A . n A 1 180 GLY 180 199 199 GLY GLY A . n A 1 181 ILE 181 200 200 ILE ILE A . n A 1 182 PRO 182 201 201 PRO PRO A . n A 1 183 LEU 183 202 202 LEU LEU A . n A 1 184 GLU 184 203 203 GLU GLU A . n A 1 185 TYR 185 204 204 TYR TYR A . n A 1 186 LEU 186 205 205 LEU LEU A . n A 1 187 GLU 187 206 206 GLU GLU A . n A 1 188 LYS 188 207 207 LYS LYS A . n A 1 189 LEU 189 208 208 LEU LEU A . n A 1 190 HIS 190 209 209 HIS HIS A . n A 1 191 TYR 191 210 210 TYR TYR A . n A 1 192 LYS 192 211 211 LYS LYS A . n A 1 193 HIS 193 212 212 HIS HIS A . n A 1 194 GLU 194 213 213 GLU GLU A . n A 1 195 SER 195 214 214 SER SER A . n A 1 196 TRP 196 215 215 TRP TRP A . n A 1 197 LEU 197 216 216 LEU LEU A . n A 1 198 LEU 198 217 217 LEU LEU A . n A 1 199 HIS 199 218 218 HIS HIS A . n A 1 200 ARG 200 219 219 ARG ARG A . n A 1 201 THR 201 220 220 THR THR A . n A 1 202 LEU 202 221 221 LEU LEU A . n A 1 203 LYS 203 222 222 LYS LYS A . n A 1 204 THR 204 223 223 THR THR A . n A 1 205 ASN 205 224 224 ASN ASN A . n A 1 206 PHE 206 225 225 PHE PHE A . n A 1 207 ASP 207 226 226 ASP ASP A . n A 1 208 TYR 208 227 227 TYR TYR A . n A 1 209 LEU 209 228 228 LEU LEU A . n A 1 210 GLN 210 229 229 GLN GLN A . n A 1 211 GLU 211 230 230 GLU GLU A . n A 1 212 VAL 212 231 231 VAL VAL A . n A 1 213 PRO 213 232 232 PRO PRO A . n A 1 214 ILE 214 233 233 ILE ILE A . n A 1 215 LEU 215 234 234 LEU LEU A . n A 1 216 THR 216 235 235 THR THR A . n A 1 217 LEU 217 236 236 LEU LEU A . n A 1 218 ASP 218 237 237 ASP ASP A . n A 1 219 VAL 219 238 238 VAL VAL A . n A 1 220 ASN 220 239 239 ASN ASN A . n A 1 221 GLU 221 240 240 GLU GLU A . n A 1 222 ASP 222 241 241 ASP ASP A . n A 1 223 PHE 223 242 242 PHE PHE A . n A 1 224 LYS 224 243 243 LYS LYS A . n A 1 225 ASP 225 244 244 ASP ASP A . n A 1 226 LYS 226 245 245 LYS LYS A . n A 1 227 TYR 227 246 246 TYR TYR A . n A 1 228 GLU 228 247 247 GLU GLU A . n A 1 229 SER 229 248 248 SER SER A . n A 1 230 LEU 230 249 249 LEU LEU A . n A 1 231 VAL 231 250 250 VAL VAL A . n A 1 232 GLU 232 251 251 GLU GLU A . n A 1 233 LYS 233 252 252 LYS LYS A . n A 1 234 VAL 234 253 253 VAL VAL A . n A 1 235 LYS 235 254 254 LYS LYS A . n A 1 236 GLU 236 255 255 GLU GLU A . n A 1 237 PHE 237 256 256 PHE PHE A . n A 1 238 LEU 238 257 257 LEU LEU A . n A 1 239 SER 239 258 258 SER SER A . n A 1 240 THR 240 259 259 THR THR A . n A 1 241 LEU 241 260 260 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP 1 261 261 ADP ADP A . C 3 B86 1 262 262 B86 DFK A . D 4 MG 1 263 263 MG MG A . E 5 HOH 1 264 264 HOH HOH A . E 5 HOH 2 265 265 HOH HOH A . E 5 HOH 3 266 266 HOH HOH A . E 5 HOH 4 267 267 HOH HOH A . E 5 HOH 5 268 268 HOH HOH A . E 5 HOH 6 269 269 HOH HOH A . E 5 HOH 7 270 270 HOH HOH A . E 5 HOH 8 271 271 HOH HOH A . E 5 HOH 9 272 272 HOH HOH A . E 5 HOH 10 273 273 HOH HOH A . E 5 HOH 11 274 274 HOH HOH A . E 5 HOH 12 275 275 HOH HOH A . E 5 HOH 13 276 276 HOH HOH A . E 5 HOH 14 277 277 HOH HOH A . E 5 HOH 15 278 278 HOH HOH A . E 5 HOH 16 279 279 HOH HOH A . E 5 HOH 17 280 280 HOH HOH A . E 5 HOH 18 281 281 HOH HOH A . E 5 HOH 19 282 282 HOH HOH A . E 5 HOH 20 283 283 HOH HOH A . E 5 HOH 21 284 284 HOH HOH A . E 5 HOH 22 285 285 HOH HOH A . E 5 HOH 23 286 286 HOH HOH A . E 5 HOH 24 287 287 HOH HOH A . E 5 HOH 25 288 288 HOH HOH A . E 5 HOH 26 289 289 HOH HOH A . E 5 HOH 27 290 290 HOH HOH A . E 5 HOH 28 291 291 HOH HOH A . E 5 HOH 29 292 292 HOH HOH A . E 5 HOH 30 293 293 HOH HOH A . E 5 HOH 31 294 294 HOH HOH A . E 5 HOH 32 295 295 HOH HOH A . E 5 HOH 33 296 296 HOH HOH A . E 5 HOH 34 297 297 HOH HOH A . E 5 HOH 35 298 298 HOH HOH A . E 5 HOH 36 299 299 HOH HOH A . E 5 HOH 37 300 300 HOH HOH A . E 5 HOH 38 301 301 HOH HOH A . E 5 HOH 39 302 302 HOH HOH A . E 5 HOH 40 303 303 HOH HOH A . E 5 HOH 41 304 304 HOH HOH A . E 5 HOH 42 305 305 HOH HOH A . E 5 HOH 43 306 306 HOH HOH A . E 5 HOH 44 307 307 HOH HOH A . E 5 HOH 45 308 308 HOH HOH A . E 5 HOH 46 309 309 HOH HOH A . E 5 HOH 47 310 310 HOH HOH A . E 5 HOH 48 311 311 HOH HOH A . E 5 HOH 49 312 312 HOH HOH A . E 5 HOH 50 313 313 HOH HOH A . E 5 HOH 51 314 314 HOH HOH A . E 5 HOH 52 315 315 HOH HOH A . E 5 HOH 53 316 316 HOH HOH A . E 5 HOH 54 317 317 HOH HOH A . E 5 HOH 55 318 318 HOH HOH A . E 5 HOH 56 319 319 HOH HOH A . E 5 HOH 57 320 320 HOH HOH A . E 5 HOH 58 321 321 HOH HOH A . E 5 HOH 59 322 322 HOH HOH A . E 5 HOH 60 323 323 HOH HOH A . E 5 HOH 61 324 324 HOH HOH A . E 5 HOH 62 325 325 HOH HOH A . E 5 HOH 63 326 326 HOH HOH A . E 5 HOH 64 327 327 HOH HOH A . E 5 HOH 65 328 328 HOH HOH A . E 5 HOH 66 329 329 HOH HOH A . E 5 HOH 67 330 330 HOH HOH A . E 5 HOH 68 331 331 HOH HOH A . E 5 HOH 69 332 332 HOH HOH A . E 5 HOH 70 333 333 HOH HOH A . E 5 HOH 71 334 334 HOH HOH A . E 5 HOH 72 335 335 HOH HOH A . E 5 HOH 73 336 336 HOH HOH A . E 5 HOH 74 337 337 HOH HOH A . E 5 HOH 75 338 338 HOH HOH A . E 5 HOH 76 339 339 HOH HOH A . E 5 HOH 77 340 340 HOH HOH A . E 5 HOH 78 341 341 HOH HOH A . E 5 HOH 79 342 342 HOH HOH A . E 5 HOH 80 343 343 HOH HOH A . E 5 HOH 81 344 344 HOH HOH A . E 5 HOH 82 345 345 HOH HOH A . E 5 HOH 83 346 346 HOH HOH A . E 5 HOH 84 347 347 HOH HOH A . E 5 HOH 85 348 348 HOH HOH A . E 5 HOH 86 349 349 HOH HOH A . E 5 HOH 87 350 350 HOH HOH A . E 5 HOH 88 351 351 HOH HOH A . E 5 HOH 89 352 352 HOH HOH A . E 5 HOH 90 353 353 HOH HOH A . E 5 HOH 91 354 354 HOH HOH A . E 5 HOH 92 355 355 HOH HOH A . E 5 HOH 93 356 356 HOH HOH A . E 5 HOH 94 357 357 HOH HOH A . E 5 HOH 95 358 358 HOH HOH A . E 5 HOH 96 359 359 HOH HOH A . E 5 HOH 97 360 360 HOH HOH A . E 5 HOH 98 361 361 HOH HOH A . E 5 HOH 99 362 362 HOH HOH A . E 5 HOH 100 363 363 HOH HOH A . E 5 HOH 101 364 364 HOH HOH A . E 5 HOH 102 365 365 HOH HOH A . E 5 HOH 103 366 366 HOH HOH A . E 5 HOH 104 367 367 HOH HOH A . E 5 HOH 105 368 368 HOH HOH A . E 5 HOH 106 369 369 HOH HOH A . E 5 HOH 107 370 370 HOH HOH A . E 5 HOH 108 371 371 HOH HOH A . E 5 HOH 109 372 372 HOH HOH A . E 5 HOH 110 373 373 HOH HOH A . E 5 HOH 111 374 374 HOH HOH A . E 5 HOH 112 375 375 HOH HOH A . E 5 HOH 113 376 376 HOH HOH A . E 5 HOH 114 377 377 HOH HOH A . E 5 HOH 115 378 378 HOH HOH A . E 5 HOH 116 379 379 HOH HOH A . E 5 HOH 117 380 380 HOH HOH A . E 5 HOH 118 381 381 HOH HOH A . E 5 HOH 119 382 382 HOH HOH A . E 5 HOH 120 383 383 HOH HOH A . E 5 HOH 121 384 384 HOH HOH A . E 5 HOH 122 385 385 HOH HOH A . E 5 HOH 123 386 386 HOH HOH A . E 5 HOH 124 387 387 HOH HOH A . E 5 HOH 125 388 388 HOH HOH A . E 5 HOH 126 389 389 HOH HOH A . E 5 HOH 127 390 390 HOH HOH A . E 5 HOH 128 391 391 HOH HOH A . E 5 HOH 129 392 392 HOH HOH A . E 5 HOH 130 393 393 HOH HOH A . E 5 HOH 131 394 394 HOH HOH A . E 5 HOH 132 395 395 HOH HOH A . E 5 HOH 133 396 396 HOH HOH A . E 5 HOH 134 397 397 HOH HOH A . E 5 HOH 135 398 398 HOH HOH A . E 5 HOH 136 399 399 HOH HOH A . E 5 HOH 137 400 400 HOH HOH A . E 5 HOH 138 401 401 HOH HOH A . E 5 HOH 139 402 402 HOH HOH A . E 5 HOH 140 403 403 HOH HOH A . E 5 HOH 141 404 404 HOH HOH A . E 5 HOH 142 405 405 HOH HOH A . E 5 HOH 143 406 406 HOH HOH A . E 5 HOH 144 407 407 HOH HOH A . E 5 HOH 145 408 408 HOH HOH A . E 5 HOH 146 409 409 HOH HOH A . E 5 HOH 147 410 410 HOH HOH A . E 5 HOH 148 411 411 HOH HOH A . E 5 HOH 149 412 412 HOH HOH A . E 5 HOH 150 413 413 HOH HOH A . E 5 HOH 151 414 414 HOH HOH A . E 5 HOH 152 415 415 HOH HOH A . E 5 HOH 153 416 416 HOH HOH A . E 5 HOH 154 417 417 HOH HOH A . E 5 HOH 155 418 418 HOH HOH A . E 5 HOH 156 419 419 HOH HOH A . E 5 HOH 157 420 420 HOH HOH A . E 5 HOH 158 421 421 HOH HOH A . E 5 HOH 159 422 422 HOH HOH A . E 5 HOH 160 423 423 HOH HOH A . E 5 HOH 161 424 424 HOH HOH A . E 5 HOH 162 425 425 HOH HOH A . E 5 HOH 163 426 426 HOH HOH A . E 5 HOH 164 427 427 HOH HOH A . E 5 HOH 165 428 428 HOH HOH A . E 5 HOH 166 429 429 HOH HOH A . E 5 HOH 167 430 430 HOH HOH A . E 5 HOH 168 431 431 HOH HOH A . E 5 HOH 169 432 432 HOH HOH A . E 5 HOH 170 433 433 HOH HOH A . E 5 HOH 171 434 434 HOH HOH A . E 5 HOH 172 435 435 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E 2 1,2 A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 2430 ? 2 MORE -20 ? 2 'SSA (A^2)' 21210 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 46.9750000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 292 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG ? A SER 16 ? A SER 35 ? 1_555 MG ? D MG . ? A MG 263 ? 1_555 OE1 ? A GLU 108 ? A GLU 127 ? 1_555 94.8 ? 2 OG ? A SER 16 ? A SER 35 ? 1_555 MG ? D MG . ? A MG 263 ? 1_555 O2B ? B ADP . ? A ADP 261 ? 1_555 87.1 ? 3 OE1 ? A GLU 108 ? A GLU 127 ? 1_555 MG ? D MG . ? A MG 263 ? 1_555 O2B ? B ADP . ? A ADP 261 ? 1_555 107.6 ? 4 OG ? A SER 16 ? A SER 35 ? 1_555 MG ? D MG . ? A MG 263 ? 1_555 O ? E HOH . ? A HOH 264 ? 1_555 73.6 ? 5 OE1 ? A GLU 108 ? A GLU 127 ? 1_555 MG ? D MG . ? A MG 263 ? 1_555 O ? E HOH . ? A HOH 264 ? 1_555 163.5 ? 6 O2B ? B ADP . ? A ADP 261 ? 1_555 MG ? D MG . ? A MG 263 ? 1_555 O ? E HOH . ? A HOH 264 ? 1_555 84.0 ? 7 OG ? A SER 16 ? A SER 35 ? 1_555 MG ? D MG . ? A MG 263 ? 1_555 O ? E HOH . ? A HOH 265 ? 1_555 126.8 ? 8 OE1 ? A GLU 108 ? A GLU 127 ? 1_555 MG ? D MG . ? A MG 263 ? 1_555 O ? E HOH . ? A HOH 265 ? 1_555 84.4 ? 9 O2B ? B ADP . ? A ADP 261 ? 1_555 MG ? D MG . ? A MG 263 ? 1_555 O ? E HOH . ? A HOH 265 ? 1_555 143.7 ? 10 O ? E HOH . ? A HOH 264 ? 1_555 MG ? D MG . ? A MG 263 ? 1_555 O ? E HOH . ? A HOH 265 ? 1_555 93.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-08-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' pdbx_struct_special_symmetry 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.value' 16 3 'Structure model' '_struct_conn.pdbx_dist_value' 17 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 29 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 30 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _software.name REFMAC _software.classification refinement _software.version 5.2.0005 _software.citation_id ? _software.pdbx_ordinal 1 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 434 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 435 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_555 _pdbx_validate_symm_contact.dist 2.08 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A LYS 22 ? ? CD A LYS 22 ? ? 1.279 1.520 -0.241 0.034 N 2 1 CD A LYS 22 ? ? CE A LYS 22 ? ? 1.671 1.508 0.163 0.025 N 3 1 CE A LYS 254 ? ? NZ A LYS 254 ? ? 1.277 1.486 -0.209 0.025 N 4 1 CG A LEU 260 ? ? CD2 A LEU 260 ? ? 1.025 1.514 -0.489 0.037 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A LYS 22 ? ? CG A LYS 22 ? ? CD A LYS 22 ? ? 131.56 111.60 19.96 2.60 N 2 1 CG A LYS 88 ? ? CD A LYS 88 ? ? CE A LYS 88 ? ? 92.33 111.90 -19.57 3.00 N 3 1 NE A ARG 106 ? ? CZ A ARG 106 ? ? NH2 A ARG 106 ? ? 107.37 120.30 -12.93 0.50 N 4 1 CB A ASN 164 ? ? CG A ASN 164 ? ? OD1 A ASN 164 ? ? 109.10 121.60 -12.50 2.00 N 5 1 CB A LEU 257 ? ? CG A LEU 257 ? ? CD1 A LEU 257 ? ? 139.71 111.00 28.71 1.70 N 6 1 CB A LEU 260 ? ? CG A LEU 260 ? ? CD2 A LEU 260 ? ? 157.21 111.00 46.21 1.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 115 ? ? 48.69 -82.53 2 1 LEU A 116 ? ? -49.05 98.61 3 1 LYS A 117 ? ? -145.07 -59.81 4 1 ASP A 118 ? ? -25.03 97.10 5 1 LYS A 121 ? ? -153.73 76.59 6 1 ARG A 128 ? ? 71.53 -178.59 7 1 ILE A 136 ? ? -105.20 -64.71 8 1 LEU A 217 ? ? -99.66 -61.67 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 106 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.140 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LYS 22 ? CD ? A LYS 3 CD 2 1 Y 0 A LYS 22 ? CE ? A LYS 3 CE 3 1 Y 0 A LYS 22 ? NZ ? A LYS 3 NZ 4 1 Y 0 A LYS 88 ? CE ? A LYS 69 CE 5 1 Y 0 A LYS 88 ? NZ ? A LYS 69 NZ 6 1 Y 0 A ARG 106 ? NH2 ? A ARG 87 NH2 7 1 Y 1 A LYS 115 ? CB ? A LYS 96 CB 8 1 Y 1 A LYS 115 ? CG ? A LYS 96 CG 9 1 Y 1 A LYS 115 ? CD ? A LYS 96 CD 10 1 Y 1 A LYS 115 ? CE ? A LYS 96 CE 11 1 Y 1 A LYS 115 ? NZ ? A LYS 96 NZ 12 1 Y 1 A ALA 119 ? CB ? A ALA 100 CB 13 1 Y 0 A ASN 164 ? CG ? A ASN 145 CG 14 1 Y 0 A ASN 164 ? OD1 ? A ASN 145 OD1 15 1 Y 0 A ASN 164 ? ND2 ? A ASN 145 ND2 16 1 Y 0 A LYS 254 ? NZ ? A LYS 235 NZ 17 1 Y 0 A LEU 257 ? CD1 ? A LEU 238 CD1 18 1 Y 0 A LEU 260 ? CD2 ? A LEU 241 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLN 65 ? A GLN 46 2 1 Y 1 A ASP 66 ? A ASP 47 3 1 Y 1 A GLU 67 ? A GLU 48 4 1 Y 1 A PHE 68 ? A PHE 49 5 1 Y 1 A GLU 69 ? A GLU 50 6 1 Y 1 A GLU 70 ? A GLU 51 7 1 Y 1 A LEU 71 ? A LEU 52 8 1 Y 1 A THR 72 ? A THR 53 9 1 Y 1 A MET 73 ? A MET 54 10 1 Y 1 A SER 74 ? A SER 55 11 1 Y 1 A GLN 75 ? A GLN 56 12 1 Y 1 A LYS 76 ? A LYS 57 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ADP PB P N N 1 ADP O1B O N N 2 ADP O2B O N N 3 ADP O3B O N N 4 ADP PA P N S 5 ADP O1A O N N 6 ADP O2A O N N 7 ADP O3A O N N 8 ADP "O5'" O N N 9 ADP "C5'" C N N 10 ADP "C4'" C N R 11 ADP "O4'" O N N 12 ADP "C3'" C N S 13 ADP "O3'" O N N 14 ADP "C2'" C N R 15 ADP "O2'" O N N 16 ADP "C1'" C N R 17 ADP N9 N Y N 18 ADP C8 C Y N 19 ADP N7 N Y N 20 ADP C5 C Y N 21 ADP C6 C Y N 22 ADP N6 N N N 23 ADP N1 N Y N 24 ADP C2 C Y N 25 ADP N3 N Y N 26 ADP C4 C Y N 27 ADP HOB2 H N N 28 ADP HOB3 H N N 29 ADP HOA2 H N N 30 ADP "H5'1" H N N 31 ADP "H5'2" H N N 32 ADP "H4'" H N N 33 ADP "H3'" H N N 34 ADP "HO3'" H N N 35 ADP "H2'" H N N 36 ADP "HO2'" H N N 37 ADP "H1'" H N N 38 ADP H8 H N N 39 ADP HN61 H N N 40 ADP HN62 H N N 41 ADP H2 H N N 42 ALA N N N N 43 ALA CA C N S 44 ALA C C N N 45 ALA O O N N 46 ALA CB C N N 47 ALA OXT O N N 48 ALA H H N N 49 ALA H2 H N N 50 ALA HA H N N 51 ALA HB1 H N N 52 ALA HB2 H N N 53 ALA HB3 H N N 54 ALA HXT H N N 55 ARG N N N N 56 ARG CA C N S 57 ARG C C N N 58 ARG O O N N 59 ARG CB C N N 60 ARG CG C N N 61 ARG CD C N N 62 ARG NE N N N 63 ARG CZ C N N 64 ARG NH1 N N N 65 ARG NH2 N N N 66 ARG OXT O N N 67 ARG H H N N 68 ARG H2 H N N 69 ARG HA H N N 70 ARG HB2 H N N 71 ARG HB3 H N N 72 ARG HG2 H N N 73 ARG HG3 H N N 74 ARG HD2 H N N 75 ARG HD3 H N N 76 ARG HE H N N 77 ARG HH11 H N N 78 ARG HH12 H N N 79 ARG HH21 H N N 80 ARG HH22 H N N 81 ARG HXT H N N 82 ASN N N N N 83 ASN CA C N S 84 ASN C C N N 85 ASN O O N N 86 ASN CB C N N 87 ASN CG C N N 88 ASN OD1 O N N 89 ASN ND2 N N N 90 ASN OXT O N N 91 ASN H H N N 92 ASN H2 H N N 93 ASN HA H N N 94 ASN HB2 H N N 95 ASN HB3 H N N 96 ASN HD21 H N N 97 ASN HD22 H N N 98 ASN HXT H N N 99 ASP N N N N 100 ASP CA C N S 101 ASP C C N N 102 ASP O O N N 103 ASP CB C N N 104 ASP CG C N N 105 ASP OD1 O N N 106 ASP OD2 O N N 107 ASP OXT O N N 108 ASP H H N N 109 ASP H2 H N N 110 ASP HA H N N 111 ASP HB2 H N N 112 ASP HB3 H N N 113 ASP HD2 H N N 114 ASP HXT H N N 115 B86 C1 C N N 116 B86 N2 N N N 117 B86 C3 C N N 118 B86 N4 N N N 119 B86 C5 C N N 120 B86 C6 C N N 121 B86 N7 N N N 122 B86 F8 F N N 123 B86 O9 O N N 124 B86 C10 C N R 125 B86 O11 O N N 126 B86 C12 C N R 127 B86 C13 C N S 128 B86 O13 O N N 129 B86 C14 C N N 130 B86 C15 C N N 131 B86 O16 O N N 132 B86 H5 H N N 133 B86 HN7 H N N 134 B86 HN7A H N N 135 B86 H10 H N N 136 B86 H12 H N N 137 B86 H13 H N N 138 B86 HO13 H N N 139 B86 H14 H N N 140 B86 H14A H N N 141 B86 H15 H N N 142 B86 H15A H N N 143 B86 HO16 H N N 144 CYS N N N N 145 CYS CA C N R 146 CYS C C N N 147 CYS O O N N 148 CYS CB C N N 149 CYS SG S N N 150 CYS OXT O N N 151 CYS H H N N 152 CYS H2 H N N 153 CYS HA H N N 154 CYS HB2 H N N 155 CYS HB3 H N N 156 CYS HG H N N 157 CYS HXT H N N 158 GLN N N N N 159 GLN CA C N S 160 GLN C C N N 161 GLN O O N N 162 GLN CB C N N 163 GLN CG C N N 164 GLN CD C N N 165 GLN OE1 O N N 166 GLN NE2 N N N 167 GLN OXT O N N 168 GLN H H N N 169 GLN H2 H N N 170 GLN HA H N N 171 GLN HB2 H N N 172 GLN HB3 H N N 173 GLN HG2 H N N 174 GLN HG3 H N N 175 GLN HE21 H N N 176 GLN HE22 H N N 177 GLN HXT H N N 178 GLU N N N N 179 GLU CA C N S 180 GLU C C N N 181 GLU O O N N 182 GLU CB C N N 183 GLU CG C N N 184 GLU CD C N N 185 GLU OE1 O N N 186 GLU OE2 O N N 187 GLU OXT O N N 188 GLU H H N N 189 GLU H2 H N N 190 GLU HA H N N 191 GLU HB2 H N N 192 GLU HB3 H N N 193 GLU HG2 H N N 194 GLU HG3 H N N 195 GLU HE2 H N N 196 GLU HXT H N N 197 GLY N N N N 198 GLY CA C N N 199 GLY C C N N 200 GLY O O N N 201 GLY OXT O N N 202 GLY H H N N 203 GLY H2 H N N 204 GLY HA2 H N N 205 GLY HA3 H N N 206 GLY HXT H N N 207 HIS N N N N 208 HIS CA C N S 209 HIS C C N N 210 HIS O O N N 211 HIS CB C N N 212 HIS CG C Y N 213 HIS ND1 N Y N 214 HIS CD2 C Y N 215 HIS CE1 C Y N 216 HIS NE2 N Y N 217 HIS OXT O N N 218 HIS H H N N 219 HIS H2 H N N 220 HIS HA H N N 221 HIS HB2 H N N 222 HIS HB3 H N N 223 HIS HD1 H N N 224 HIS HD2 H N N 225 HIS HE1 H N N 226 HIS HE2 H N N 227 HIS HXT H N N 228 HOH O O N N 229 HOH H1 H N N 230 HOH H2 H N N 231 ILE N N N N 232 ILE CA C N S 233 ILE C C N N 234 ILE O O N N 235 ILE CB C N S 236 ILE CG1 C N N 237 ILE CG2 C N N 238 ILE CD1 C N N 239 ILE OXT O N N 240 ILE H H N N 241 ILE H2 H N N 242 ILE HA H N N 243 ILE HB H N N 244 ILE HG12 H N N 245 ILE HG13 H N N 246 ILE HG21 H N N 247 ILE HG22 H N N 248 ILE HG23 H N N 249 ILE HD11 H N N 250 ILE HD12 H N N 251 ILE HD13 H N N 252 ILE HXT H N N 253 LEU N N N N 254 LEU CA C N S 255 LEU C C N N 256 LEU O O N N 257 LEU CB C N N 258 LEU CG C N N 259 LEU CD1 C N N 260 LEU CD2 C N N 261 LEU OXT O N N 262 LEU H H N N 263 LEU H2 H N N 264 LEU HA H N N 265 LEU HB2 H N N 266 LEU HB3 H N N 267 LEU HG H N N 268 LEU HD11 H N N 269 LEU HD12 H N N 270 LEU HD13 H N N 271 LEU HD21 H N N 272 LEU HD22 H N N 273 LEU HD23 H N N 274 LEU HXT H N N 275 LYS N N N N 276 LYS CA C N S 277 LYS C C N N 278 LYS O O N N 279 LYS CB C N N 280 LYS CG C N N 281 LYS CD C N N 282 LYS CE C N N 283 LYS NZ N N N 284 LYS OXT O N N 285 LYS H H N N 286 LYS H2 H N N 287 LYS HA H N N 288 LYS HB2 H N N 289 LYS HB3 H N N 290 LYS HG2 H N N 291 LYS HG3 H N N 292 LYS HD2 H N N 293 LYS HD3 H N N 294 LYS HE2 H N N 295 LYS HE3 H N N 296 LYS HZ1 H N N 297 LYS HZ2 H N N 298 LYS HZ3 H N N 299 LYS HXT H N N 300 MET N N N N 301 MET CA C N S 302 MET C C N N 303 MET O O N N 304 MET CB C N N 305 MET CG C N N 306 MET SD S N N 307 MET CE C N N 308 MET OXT O N N 309 MET H H N N 310 MET H2 H N N 311 MET HA H N N 312 MET HB2 H N N 313 MET HB3 H N N 314 MET HG2 H N N 315 MET HG3 H N N 316 MET HE1 H N N 317 MET HE2 H N N 318 MET HE3 H N N 319 MET HXT H N N 320 MG MG MG N N 321 PHE N N N N 322 PHE CA C N S 323 PHE C C N N 324 PHE O O N N 325 PHE CB C N N 326 PHE CG C Y N 327 PHE CD1 C Y N 328 PHE CD2 C Y N 329 PHE CE1 C Y N 330 PHE CE2 C Y N 331 PHE CZ C Y N 332 PHE OXT O N N 333 PHE H H N N 334 PHE H2 H N N 335 PHE HA H N N 336 PHE HB2 H N N 337 PHE HB3 H N N 338 PHE HD1 H N N 339 PHE HD2 H N N 340 PHE HE1 H N N 341 PHE HE2 H N N 342 PHE HZ H N N 343 PHE HXT H N N 344 PRO N N N N 345 PRO CA C N S 346 PRO C C N N 347 PRO O O N N 348 PRO CB C N N 349 PRO CG C N N 350 PRO CD C N N 351 PRO OXT O N N 352 PRO H H N N 353 PRO HA H N N 354 PRO HB2 H N N 355 PRO HB3 H N N 356 PRO HG2 H N N 357 PRO HG3 H N N 358 PRO HD2 H N N 359 PRO HD3 H N N 360 PRO HXT H N N 361 SER N N N N 362 SER CA C N S 363 SER C C N N 364 SER O O N N 365 SER CB C N N 366 SER OG O N N 367 SER OXT O N N 368 SER H H N N 369 SER H2 H N N 370 SER HA H N N 371 SER HB2 H N N 372 SER HB3 H N N 373 SER HG H N N 374 SER HXT H N N 375 THR N N N N 376 THR CA C N S 377 THR C C N N 378 THR O O N N 379 THR CB C N R 380 THR OG1 O N N 381 THR CG2 C N N 382 THR OXT O N N 383 THR H H N N 384 THR H2 H N N 385 THR HA H N N 386 THR HB H N N 387 THR HG1 H N N 388 THR HG21 H N N 389 THR HG22 H N N 390 THR HG23 H N N 391 THR HXT H N N 392 TRP N N N N 393 TRP CA C N S 394 TRP C C N N 395 TRP O O N N 396 TRP CB C N N 397 TRP CG C Y N 398 TRP CD1 C Y N 399 TRP CD2 C Y N 400 TRP NE1 N Y N 401 TRP CE2 C Y N 402 TRP CE3 C Y N 403 TRP CZ2 C Y N 404 TRP CZ3 C Y N 405 TRP CH2 C Y N 406 TRP OXT O N N 407 TRP H H N N 408 TRP H2 H N N 409 TRP HA H N N 410 TRP HB2 H N N 411 TRP HB3 H N N 412 TRP HD1 H N N 413 TRP HE1 H N N 414 TRP HE3 H N N 415 TRP HZ2 H N N 416 TRP HZ3 H N N 417 TRP HH2 H N N 418 TRP HXT H N N 419 TYR N N N N 420 TYR CA C N S 421 TYR C C N N 422 TYR O O N N 423 TYR CB C N N 424 TYR CG C Y N 425 TYR CD1 C Y N 426 TYR CD2 C Y N 427 TYR CE1 C Y N 428 TYR CE2 C Y N 429 TYR CZ C Y N 430 TYR OH O N N 431 TYR OXT O N N 432 TYR H H N N 433 TYR H2 H N N 434 TYR HA H N N 435 TYR HB2 H N N 436 TYR HB3 H N N 437 TYR HD1 H N N 438 TYR HD2 H N N 439 TYR HE1 H N N 440 TYR HE2 H N N 441 TYR HH H N N 442 TYR HXT H N N 443 VAL N N N N 444 VAL CA C N S 445 VAL C C N N 446 VAL O O N N 447 VAL CB C N N 448 VAL CG1 C N N 449 VAL CG2 C N N 450 VAL OXT O N N 451 VAL H H N N 452 VAL H2 H N N 453 VAL HA H N N 454 VAL HB H N N 455 VAL HG11 H N N 456 VAL HG12 H N N 457 VAL HG13 H N N 458 VAL HG21 H N N 459 VAL HG22 H N N 460 VAL HG23 H N N 461 VAL HXT H N N 462 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADP PB O1B doub N N 1 ADP PB O2B sing N N 2 ADP PB O3B sing N N 3 ADP PB O3A sing N N 4 ADP O2B HOB2 sing N N 5 ADP O3B HOB3 sing N N 6 ADP PA O1A doub N N 7 ADP PA O2A sing N N 8 ADP PA O3A sing N N 9 ADP PA "O5'" sing N N 10 ADP O2A HOA2 sing N N 11 ADP "O5'" "C5'" sing N N 12 ADP "C5'" "C4'" sing N N 13 ADP "C5'" "H5'1" sing N N 14 ADP "C5'" "H5'2" sing N N 15 ADP "C4'" "O4'" sing N N 16 ADP "C4'" "C3'" sing N N 17 ADP "C4'" "H4'" sing N N 18 ADP "O4'" "C1'" sing N N 19 ADP "C3'" "O3'" sing N N 20 ADP "C3'" "C2'" sing N N 21 ADP "C3'" "H3'" sing N N 22 ADP "O3'" "HO3'" sing N N 23 ADP "C2'" "O2'" sing N N 24 ADP "C2'" "C1'" sing N N 25 ADP "C2'" "H2'" sing N N 26 ADP "O2'" "HO2'" sing N N 27 ADP "C1'" N9 sing N N 28 ADP "C1'" "H1'" sing N N 29 ADP N9 C8 sing Y N 30 ADP N9 C4 sing Y N 31 ADP C8 N7 doub Y N 32 ADP C8 H8 sing N N 33 ADP N7 C5 sing Y N 34 ADP C5 C6 sing Y N 35 ADP C5 C4 doub Y N 36 ADP C6 N6 sing N N 37 ADP C6 N1 doub Y N 38 ADP N6 HN61 sing N N 39 ADP N6 HN62 sing N N 40 ADP N1 C2 sing Y N 41 ADP C2 N3 doub Y N 42 ADP C2 H2 sing N N 43 ADP N3 C4 sing Y N 44 ALA N CA sing N N 45 ALA N H sing N N 46 ALA N H2 sing N N 47 ALA CA C sing N N 48 ALA CA CB sing N N 49 ALA CA HA sing N N 50 ALA C O doub N N 51 ALA C OXT sing N N 52 ALA CB HB1 sing N N 53 ALA CB HB2 sing N N 54 ALA CB HB3 sing N N 55 ALA OXT HXT sing N N 56 ARG N CA sing N N 57 ARG N H sing N N 58 ARG N H2 sing N N 59 ARG CA C sing N N 60 ARG CA CB sing N N 61 ARG CA HA sing N N 62 ARG C O doub N N 63 ARG C OXT sing N N 64 ARG CB CG sing N N 65 ARG CB HB2 sing N N 66 ARG CB HB3 sing N N 67 ARG CG CD sing N N 68 ARG CG HG2 sing N N 69 ARG CG HG3 sing N N 70 ARG CD NE sing N N 71 ARG CD HD2 sing N N 72 ARG CD HD3 sing N N 73 ARG NE CZ sing N N 74 ARG NE HE sing N N 75 ARG CZ NH1 sing N N 76 ARG CZ NH2 doub N N 77 ARG NH1 HH11 sing N N 78 ARG NH1 HH12 sing N N 79 ARG NH2 HH21 sing N N 80 ARG NH2 HH22 sing N N 81 ARG OXT HXT sing N N 82 ASN N CA sing N N 83 ASN N H sing N N 84 ASN N H2 sing N N 85 ASN CA C sing N N 86 ASN CA CB sing N N 87 ASN CA HA sing N N 88 ASN C O doub N N 89 ASN C OXT sing N N 90 ASN CB CG sing N N 91 ASN CB HB2 sing N N 92 ASN CB HB3 sing N N 93 ASN CG OD1 doub N N 94 ASN CG ND2 sing N N 95 ASN ND2 HD21 sing N N 96 ASN ND2 HD22 sing N N 97 ASN OXT HXT sing N N 98 ASP N CA sing N N 99 ASP N H sing N N 100 ASP N H2 sing N N 101 ASP CA C sing N N 102 ASP CA CB sing N N 103 ASP CA HA sing N N 104 ASP C O doub N N 105 ASP C OXT sing N N 106 ASP CB CG sing N N 107 ASP CB HB2 sing N N 108 ASP CB HB3 sing N N 109 ASP CG OD1 doub N N 110 ASP CG OD2 sing N N 111 ASP OD2 HD2 sing N N 112 ASP OXT HXT sing N N 113 B86 C1 N2 doub N N 114 B86 C1 C6 sing N N 115 B86 C1 N7 sing N N 116 B86 N2 C3 sing N N 117 B86 C3 N4 sing N N 118 B86 C3 O9 doub N N 119 B86 N4 C5 sing N N 120 B86 N4 C10 sing N N 121 B86 C5 C6 doub N N 122 B86 C6 F8 sing N N 123 B86 C10 O11 sing N N 124 B86 C10 C14 sing N N 125 B86 O11 C12 sing N N 126 B86 C12 C13 sing N N 127 B86 C12 C15 sing N N 128 B86 C13 O13 sing N N 129 B86 C13 C14 sing N N 130 B86 C15 O16 sing N N 131 B86 C5 H5 sing N N 132 B86 N7 HN7 sing N N 133 B86 N7 HN7A sing N N 134 B86 C10 H10 sing N N 135 B86 C12 H12 sing N N 136 B86 C13 H13 sing N N 137 B86 O13 HO13 sing N N 138 B86 C14 H14 sing N N 139 B86 C14 H14A sing N N 140 B86 C15 H15 sing N N 141 B86 C15 H15A sing N N 142 B86 O16 HO16 sing N N 143 CYS N CA sing N N 144 CYS N H sing N N 145 CYS N H2 sing N N 146 CYS CA C sing N N 147 CYS CA CB sing N N 148 CYS CA HA sing N N 149 CYS C O doub N N 150 CYS C OXT sing N N 151 CYS CB SG sing N N 152 CYS CB HB2 sing N N 153 CYS CB HB3 sing N N 154 CYS SG HG sing N N 155 CYS OXT HXT sing N N 156 GLN N CA sing N N 157 GLN N H sing N N 158 GLN N H2 sing N N 159 GLN CA C sing N N 160 GLN CA CB sing N N 161 GLN CA HA sing N N 162 GLN C O doub N N 163 GLN C OXT sing N N 164 GLN CB CG sing N N 165 GLN CB HB2 sing N N 166 GLN CB HB3 sing N N 167 GLN CG CD sing N N 168 GLN CG HG2 sing N N 169 GLN CG HG3 sing N N 170 GLN CD OE1 doub N N 171 GLN CD NE2 sing N N 172 GLN NE2 HE21 sing N N 173 GLN NE2 HE22 sing N N 174 GLN OXT HXT sing N N 175 GLU N CA sing N N 176 GLU N H sing N N 177 GLU N H2 sing N N 178 GLU CA C sing N N 179 GLU CA CB sing N N 180 GLU CA HA sing N N 181 GLU C O doub N N 182 GLU C OXT sing N N 183 GLU CB CG sing N N 184 GLU CB HB2 sing N N 185 GLU CB HB3 sing N N 186 GLU CG CD sing N N 187 GLU CG HG2 sing N N 188 GLU CG HG3 sing N N 189 GLU CD OE1 doub N N 190 GLU CD OE2 sing N N 191 GLU OE2 HE2 sing N N 192 GLU OXT HXT sing N N 193 GLY N CA sing N N 194 GLY N H sing N N 195 GLY N H2 sing N N 196 GLY CA C sing N N 197 GLY CA HA2 sing N N 198 GLY CA HA3 sing N N 199 GLY C O doub N N 200 GLY C OXT sing N N 201 GLY OXT HXT sing N N 202 HIS N CA sing N N 203 HIS N H sing N N 204 HIS N H2 sing N N 205 HIS CA C sing N N 206 HIS CA CB sing N N 207 HIS CA HA sing N N 208 HIS C O doub N N 209 HIS C OXT sing N N 210 HIS CB CG sing N N 211 HIS CB HB2 sing N N 212 HIS CB HB3 sing N N 213 HIS CG ND1 sing Y N 214 HIS CG CD2 doub Y N 215 HIS ND1 CE1 doub Y N 216 HIS ND1 HD1 sing N N 217 HIS CD2 NE2 sing Y N 218 HIS CD2 HD2 sing N N 219 HIS CE1 NE2 sing Y N 220 HIS CE1 HE1 sing N N 221 HIS NE2 HE2 sing N N 222 HIS OXT HXT sing N N 223 HOH O H1 sing N N 224 HOH O H2 sing N N 225 ILE N CA sing N N 226 ILE N H sing N N 227 ILE N H2 sing N N 228 ILE CA C sing N N 229 ILE CA CB sing N N 230 ILE CA HA sing N N 231 ILE C O doub N N 232 ILE C OXT sing N N 233 ILE CB CG1 sing N N 234 ILE CB CG2 sing N N 235 ILE CB HB sing N N 236 ILE CG1 CD1 sing N N 237 ILE CG1 HG12 sing N N 238 ILE CG1 HG13 sing N N 239 ILE CG2 HG21 sing N N 240 ILE CG2 HG22 sing N N 241 ILE CG2 HG23 sing N N 242 ILE CD1 HD11 sing N N 243 ILE CD1 HD12 sing N N 244 ILE CD1 HD13 sing N N 245 ILE OXT HXT sing N N 246 LEU N CA sing N N 247 LEU N H sing N N 248 LEU N H2 sing N N 249 LEU CA C sing N N 250 LEU CA CB sing N N 251 LEU CA HA sing N N 252 LEU C O doub N N 253 LEU C OXT sing N N 254 LEU CB CG sing N N 255 LEU CB HB2 sing N N 256 LEU CB HB3 sing N N 257 LEU CG CD1 sing N N 258 LEU CG CD2 sing N N 259 LEU CG HG sing N N 260 LEU CD1 HD11 sing N N 261 LEU CD1 HD12 sing N N 262 LEU CD1 HD13 sing N N 263 LEU CD2 HD21 sing N N 264 LEU CD2 HD22 sing N N 265 LEU CD2 HD23 sing N N 266 LEU OXT HXT sing N N 267 LYS N CA sing N N 268 LYS N H sing N N 269 LYS N H2 sing N N 270 LYS CA C sing N N 271 LYS CA CB sing N N 272 LYS CA HA sing N N 273 LYS C O doub N N 274 LYS C OXT sing N N 275 LYS CB CG sing N N 276 LYS CB HB2 sing N N 277 LYS CB HB3 sing N N 278 LYS CG CD sing N N 279 LYS CG HG2 sing N N 280 LYS CG HG3 sing N N 281 LYS CD CE sing N N 282 LYS CD HD2 sing N N 283 LYS CD HD3 sing N N 284 LYS CE NZ sing N N 285 LYS CE HE2 sing N N 286 LYS CE HE3 sing N N 287 LYS NZ HZ1 sing N N 288 LYS NZ HZ2 sing N N 289 LYS NZ HZ3 sing N N 290 LYS OXT HXT sing N N 291 MET N CA sing N N 292 MET N H sing N N 293 MET N H2 sing N N 294 MET CA C sing N N 295 MET CA CB sing N N 296 MET CA HA sing N N 297 MET C O doub N N 298 MET C OXT sing N N 299 MET CB CG sing N N 300 MET CB HB2 sing N N 301 MET CB HB3 sing N N 302 MET CG SD sing N N 303 MET CG HG2 sing N N 304 MET CG HG3 sing N N 305 MET SD CE sing N N 306 MET CE HE1 sing N N 307 MET CE HE2 sing N N 308 MET CE HE3 sing N N 309 MET OXT HXT sing N N 310 PHE N CA sing N N 311 PHE N H sing N N 312 PHE N H2 sing N N 313 PHE CA C sing N N 314 PHE CA CB sing N N 315 PHE CA HA sing N N 316 PHE C O doub N N 317 PHE C OXT sing N N 318 PHE CB CG sing N N 319 PHE CB HB2 sing N N 320 PHE CB HB3 sing N N 321 PHE CG CD1 doub Y N 322 PHE CG CD2 sing Y N 323 PHE CD1 CE1 sing Y N 324 PHE CD1 HD1 sing N N 325 PHE CD2 CE2 doub Y N 326 PHE CD2 HD2 sing N N 327 PHE CE1 CZ doub Y N 328 PHE CE1 HE1 sing N N 329 PHE CE2 CZ sing Y N 330 PHE CE2 HE2 sing N N 331 PHE CZ HZ sing N N 332 PHE OXT HXT sing N N 333 PRO N CA sing N N 334 PRO N CD sing N N 335 PRO N H sing N N 336 PRO CA C sing N N 337 PRO CA CB sing N N 338 PRO CA HA sing N N 339 PRO C O doub N N 340 PRO C OXT sing N N 341 PRO CB CG sing N N 342 PRO CB HB2 sing N N 343 PRO CB HB3 sing N N 344 PRO CG CD sing N N 345 PRO CG HG2 sing N N 346 PRO CG HG3 sing N N 347 PRO CD HD2 sing N N 348 PRO CD HD3 sing N N 349 PRO OXT HXT sing N N 350 SER N CA sing N N 351 SER N H sing N N 352 SER N H2 sing N N 353 SER CA C sing N N 354 SER CA CB sing N N 355 SER CA HA sing N N 356 SER C O doub N N 357 SER C OXT sing N N 358 SER CB OG sing N N 359 SER CB HB2 sing N N 360 SER CB HB3 sing N N 361 SER OG HG sing N N 362 SER OXT HXT sing N N 363 THR N CA sing N N 364 THR N H sing N N 365 THR N H2 sing N N 366 THR CA C sing N N 367 THR CA CB sing N N 368 THR CA HA sing N N 369 THR C O doub N N 370 THR C OXT sing N N 371 THR CB OG1 sing N N 372 THR CB CG2 sing N N 373 THR CB HB sing N N 374 THR OG1 HG1 sing N N 375 THR CG2 HG21 sing N N 376 THR CG2 HG22 sing N N 377 THR CG2 HG23 sing N N 378 THR OXT HXT sing N N 379 TRP N CA sing N N 380 TRP N H sing N N 381 TRP N H2 sing N N 382 TRP CA C sing N N 383 TRP CA CB sing N N 384 TRP CA HA sing N N 385 TRP C O doub N N 386 TRP C OXT sing N N 387 TRP CB CG sing N N 388 TRP CB HB2 sing N N 389 TRP CB HB3 sing N N 390 TRP CG CD1 doub Y N 391 TRP CG CD2 sing Y N 392 TRP CD1 NE1 sing Y N 393 TRP CD1 HD1 sing N N 394 TRP CD2 CE2 doub Y N 395 TRP CD2 CE3 sing Y N 396 TRP NE1 CE2 sing Y N 397 TRP NE1 HE1 sing N N 398 TRP CE2 CZ2 sing Y N 399 TRP CE3 CZ3 doub Y N 400 TRP CE3 HE3 sing N N 401 TRP CZ2 CH2 doub Y N 402 TRP CZ2 HZ2 sing N N 403 TRP CZ3 CH2 sing Y N 404 TRP CZ3 HZ3 sing N N 405 TRP CH2 HH2 sing N N 406 TRP OXT HXT sing N N 407 TYR N CA sing N N 408 TYR N H sing N N 409 TYR N H2 sing N N 410 TYR CA C sing N N 411 TYR CA CB sing N N 412 TYR CA HA sing N N 413 TYR C O doub N N 414 TYR C OXT sing N N 415 TYR CB CG sing N N 416 TYR CB HB2 sing N N 417 TYR CB HB3 sing N N 418 TYR CG CD1 doub Y N 419 TYR CG CD2 sing Y N 420 TYR CD1 CE1 sing Y N 421 TYR CD1 HD1 sing N N 422 TYR CD2 CE2 doub Y N 423 TYR CD2 HD2 sing N N 424 TYR CE1 CZ doub Y N 425 TYR CE1 HE1 sing N N 426 TYR CE2 CZ sing Y N 427 TYR CE2 HE2 sing N N 428 TYR CZ OH sing N N 429 TYR OH HH sing N N 430 TYR OXT HXT sing N N 431 VAL N CA sing N N 432 VAL N H sing N N 433 VAL N H2 sing N N 434 VAL CA C sing N N 435 VAL CA CB sing N N 436 VAL CA HA sing N N 437 VAL C O doub N N 438 VAL C OXT sing N N 439 VAL CB CG1 sing N N 440 VAL CB CG2 sing N N 441 VAL CB HB sing N N 442 VAL CG1 HG11 sing N N 443 VAL CG1 HG12 sing N N 444 VAL CG1 HG13 sing N N 445 VAL CG2 HG21 sing N N 446 VAL CG2 HG22 sing N N 447 VAL CG2 HG23 sing N N 448 VAL OXT HXT sing N N 449 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "ADENOSINE-5'-DIPHOSPHATE" ADP 3 "2'-deoxy-5-fluorocytidine" B86 4 'MAGNESIUM ION' MG 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1P60 _pdbx_initial_refinement_model.details ? #