HEADER TRANSFERASE 19-AUG-09 3IQ7 TITLE CRYSTAL STRUCTURE OF HUMAN HASPIN IN COMPLEX WITH 5-IODOTUBERCIDIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE HASPIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 465-798; COMPND 5 SYNONYM: HASPIN, HAPLOID GERM CELL-SPECIFIC NUCLEAR PROTEIN KINASE, COMPND 6 H-HASPIN, GERM CELL-SPECIFIC GENE 2 PROTEIN; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GSG2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS HASPIN, GERM CELL ASSOCIATED 2, HAPLOID GERM CELL SPECIFIC NUCLEAR KEYWDS 2 PROTEIN KINASE, SGC, STRUCTURAL GENOMICS CONSORTIUM, ATP-BINDING, KEYWDS 3 CELL CYCLE, CHROMATIN REGULATOR, KINASE, MAGNESIUM, NUCLEOTIDE- KEYWDS 4 BINDING, NUCLEUS, PHOSPHOPROTEIN, SERINE/THREONINE-PROTEIN KINASE, KEYWDS 5 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.FILIPPAKOPOULOS,J.ESWARAN,T.KEATES,N.BURGESS-BROWN,O.FEDOROV, AUTHOR 2 A.C.W.PIKE,F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT, AUTHOR 3 C.BOUNTRA,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 01-NOV-23 3IQ7 1 REMARK SEQADV REVDAT 3 13-JUL-11 3IQ7 1 VERSN REVDAT 2 01-SEP-10 3IQ7 1 JRNL REVDAT 1 08-SEP-09 3IQ7 0 JRNL AUTH J.ESWARAN,D.PATNAIK,P.FILIPPAKOPOULOS,F.WANG,R.L.STEIN, JRNL AUTH 2 J.W.MURRAY,J.M.HIGGINS,S.KNAPP JRNL TITL STRUCTURE AND FUNCTIONAL CHARACTERIZATION OF THE ATYPICAL JRNL TITL 2 HUMAN KINASE HASPIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 20198 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19918057 JRNL DOI 10.1073/PNAS.0901989106 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 32620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1440 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2269 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2599 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 262 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 27.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.67000 REMARK 3 B22 (A**2) : 0.24000 REMARK 3 B33 (A**2) : -0.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.132 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2735 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1850 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3702 ; 1.554 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4518 ; 1.279 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 331 ; 6.197 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;34.625 ;24.180 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 484 ;12.730 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;14.328 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 415 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2989 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 548 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1651 ; 3.500 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 669 ; 1.217 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2679 ; 4.755 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1084 ; 7.856 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1023 ; 9.161 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 471 A 486 REMARK 3 ORIGIN FOR THE GROUP (A): 4.3330 -17.4410 -29.5040 REMARK 3 T TENSOR REMARK 3 T11: 0.2226 T22: 0.0964 REMARK 3 T33: 0.0325 T12: -0.0508 REMARK 3 T13: 0.0205 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 7.3305 L22: 3.3798 REMARK 3 L33: 1.0291 L12: -3.0600 REMARK 3 L13: -2.7176 L23: 0.9267 REMARK 3 S TENSOR REMARK 3 S11: 0.3050 S12: 0.5416 S13: 0.4125 REMARK 3 S21: -0.3319 S22: -0.1478 S23: -0.1997 REMARK 3 S31: -0.1075 S32: -0.2016 S33: -0.1572 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 487 A 610 REMARK 3 ORIGIN FOR THE GROUP (A): 3.8430 -13.0970 -17.1370 REMARK 3 T TENSOR REMARK 3 T11: 0.0953 T22: 0.0584 REMARK 3 T33: 0.0372 T12: -0.0126 REMARK 3 T13: 0.0005 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.3123 L22: 0.9107 REMARK 3 L33: 0.4002 L12: 0.2400 REMARK 3 L13: 0.2087 L23: 0.3705 REMARK 3 S TENSOR REMARK 3 S11: 0.0150 S12: -0.0180 S13: 0.0192 REMARK 3 S21: -0.0468 S22: -0.0671 S23: 0.0134 REMARK 3 S31: 0.0427 S32: -0.0445 S33: 0.0521 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 611 A 798 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1780 -0.9330 -0.4550 REMARK 3 T TENSOR REMARK 3 T11: 0.0912 T22: 0.0576 REMARK 3 T33: 0.0244 T12: 0.0106 REMARK 3 T13: -0.0347 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.8560 L22: 0.6111 REMARK 3 L33: 0.8620 L12: -0.2080 REMARK 3 L13: 0.1725 L23: -0.0165 REMARK 3 S TENSOR REMARK 3 S11: -0.0450 S12: -0.0938 S13: 0.0262 REMARK 3 S21: 0.1381 S22: 0.0316 S23: -0.0471 REMARK 3 S31: 0.0039 S32: 0.0362 S33: 0.0134 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3IQ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054727. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32676 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : 0.62000 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.2 REMARK 200 STARTING MODEL: 2VUW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4M (NH4)H2PO4, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.51700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.52400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.24300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.52400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.51700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.24300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 442 REMARK 465 HIS A 443 REMARK 465 HIS A 444 REMARK 465 HIS A 445 REMARK 465 HIS A 446 REMARK 465 HIS A 447 REMARK 465 HIS A 448 REMARK 465 SER A 449 REMARK 465 SER A 450 REMARK 465 GLY A 451 REMARK 465 VAL A 452 REMARK 465 ASP A 453 REMARK 465 LEU A 454 REMARK 465 GLY A 455 REMARK 465 THR A 456 REMARK 465 GLU A 457 REMARK 465 ASN A 458 REMARK 465 LEU A 459 REMARK 465 TYR A 460 REMARK 465 PHE A 461 REMARK 465 GLN A 462 REMARK 465 SER A 463 REMARK 465 MET A 464 REMARK 465 GLY A 465 REMARK 465 GLU A 466 REMARK 465 CYS A 467 REMARK 465 SER A 468 REMARK 465 GLN A 469 REMARK 465 LYS A 470 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 482 CG CD OE1 OE2 REMARK 470 GLU A 488 CD OE1 OE2 REMARK 470 GLU A 530 CG CD OE1 OE2 REMARK 470 LYS A 658 CE NZ REMARK 470 LYS A 659 NZ REMARK 470 LYS A 672 CE NZ REMARK 470 GLU A 708 CG CD OE1 OE2 REMARK 470 LYS A 727 CE NZ REMARK 470 LYS A 759 CD CE NZ REMARK 470 LYS A 768 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ASN A 588 ND2 ASN A 763 4445 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 478 CB CYS A 478 SG -0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 549 -57.20 -123.60 REMARK 500 ASP A 649 44.36 -156.05 REMARK 500 LEU A 650 56.15 -92.99 REMARK 500 ASP A 687 93.80 78.50 REMARK 500 ASN A 763 9.54 -159.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5ID A 799 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 DBREF 3IQ7 A 465 798 UNP Q8TF76 HASP_HUMAN 465 798 SEQADV 3IQ7 MET A 442 UNP Q8TF76 EXPRESSION TAG SEQADV 3IQ7 HIS A 443 UNP Q8TF76 EXPRESSION TAG SEQADV 3IQ7 HIS A 444 UNP Q8TF76 EXPRESSION TAG SEQADV 3IQ7 HIS A 445 UNP Q8TF76 EXPRESSION TAG SEQADV 3IQ7 HIS A 446 UNP Q8TF76 EXPRESSION TAG SEQADV 3IQ7 HIS A 447 UNP Q8TF76 EXPRESSION TAG SEQADV 3IQ7 HIS A 448 UNP Q8TF76 EXPRESSION TAG SEQADV 3IQ7 SER A 449 UNP Q8TF76 EXPRESSION TAG SEQADV 3IQ7 SER A 450 UNP Q8TF76 EXPRESSION TAG SEQADV 3IQ7 GLY A 451 UNP Q8TF76 EXPRESSION TAG SEQADV 3IQ7 VAL A 452 UNP Q8TF76 EXPRESSION TAG SEQADV 3IQ7 ASP A 453 UNP Q8TF76 EXPRESSION TAG SEQADV 3IQ7 LEU A 454 UNP Q8TF76 EXPRESSION TAG SEQADV 3IQ7 GLY A 455 UNP Q8TF76 EXPRESSION TAG SEQADV 3IQ7 THR A 456 UNP Q8TF76 EXPRESSION TAG SEQADV 3IQ7 GLU A 457 UNP Q8TF76 EXPRESSION TAG SEQADV 3IQ7 ASN A 458 UNP Q8TF76 EXPRESSION TAG SEQADV 3IQ7 LEU A 459 UNP Q8TF76 EXPRESSION TAG SEQADV 3IQ7 TYR A 460 UNP Q8TF76 EXPRESSION TAG SEQADV 3IQ7 PHE A 461 UNP Q8TF76 EXPRESSION TAG SEQADV 3IQ7 GLN A 462 UNP Q8TF76 EXPRESSION TAG SEQADV 3IQ7 SER A 463 UNP Q8TF76 EXPRESSION TAG SEQADV 3IQ7 MET A 464 UNP Q8TF76 EXPRESSION TAG SEQRES 1 A 357 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 357 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLY GLU CYS SEQRES 3 A 357 SER GLN LYS GLY PRO VAL PRO PHE SER HIS CYS LEU PRO SEQRES 4 A 357 THR GLU LYS LEU GLN ARG CYS GLU LYS ILE GLY GLU GLY SEQRES 5 A 357 VAL PHE GLY GLU VAL PHE GLN THR ILE ALA ASP HIS THR SEQRES 6 A 357 PRO VAL ALA ILE LYS ILE ILE ALA ILE GLU GLY PRO ASP SEQRES 7 A 357 LEU VAL ASN GLY SER HIS GLN LYS THR PHE GLU GLU ILE SEQRES 8 A 357 LEU PRO GLU ILE ILE ILE SER LYS GLU LEU SER LEU LEU SEQRES 9 A 357 SER GLY GLU VAL CYS ASN ARG THR GLU GLY PHE ILE GLY SEQRES 10 A 357 LEU ASN SER VAL HIS CYS VAL GLN GLY SER TYR PRO PRO SEQRES 11 A 357 LEU LEU LEU LYS ALA TRP ASP HIS TYR ASN SER THR LYS SEQRES 12 A 357 GLY SER ALA ASN ASP ARG PRO ASP PHE PHE LYS ASP ASP SEQRES 13 A 357 GLN LEU PHE ILE VAL LEU GLU PHE GLU PHE GLY GLY ILE SEQRES 14 A 357 ASP LEU GLU GLN MET ARG THR LYS LEU SER SER LEU ALA SEQRES 15 A 357 THR ALA LYS SER ILE LEU HIS GLN LEU THR ALA SER LEU SEQRES 16 A 357 ALA VAL ALA GLU ALA SER LEU ARG PHE GLU HIS ARG ASP SEQRES 17 A 357 LEU HIS TRP GLY ASN VAL LEU LEU LYS LYS THR SER LEU SEQRES 18 A 357 LYS LYS LEU HIS TYR THR LEU ASN GLY LYS SER SER THR SEQRES 19 A 357 ILE PRO SER CYS GLY LEU GLN VAL SER ILE ILE ASP TYR SEQRES 20 A 357 THR LEU SER ARG LEU GLU ARG ASP GLY ILE VAL VAL PHE SEQRES 21 A 357 CYS ASP VAL SER MET ASP GLU ASP LEU PHE THR GLY ASP SEQRES 22 A 357 GLY ASP TYR GLN PHE ASP ILE TYR ARG LEU MET LYS LYS SEQRES 23 A 357 GLU ASN ASN ASN ARG TRP GLY GLU TYR HIS PRO TYR SER SEQRES 24 A 357 ASN VAL LEU TRP LEU HIS TYR LEU THR ASP LYS MET LEU SEQRES 25 A 357 LYS GLN MET THR PHE LYS THR LYS CYS ASN THR PRO ALA SEQRES 26 A 357 MET LYS GLN ILE LYS ARG LYS ILE GLN GLU PHE HIS ARG SEQRES 27 A 357 THR MET LEU ASN PHE SER SER ALA THR ASP LEU LEU CYS SEQRES 28 A 357 GLN HIS SER LEU PHE LYS HET PO4 A 1 5 HET 5ID A 799 20 HET IOD A 800 2 HET EDO A 801 4 HET EDO A 2 4 HETNAM PO4 PHOSPHATE ION HETNAM 5ID (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3- HETNAM 2 5ID D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3, HETNAM 3 5ID 4-DIOL HETNAM IOD IODIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN 5ID 5-IODOTUBERCIDIN HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PO4 O4 P 3- FORMUL 3 5ID C11 H13 I N4 O4 FORMUL 4 IOD I 1- FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 HOH *262(H2 O) HELIX 1 1 PHE A 475 LEU A 479 1 5 HELIX 2 2 PRO A 480 ARG A 486 1 7 HELIX 3 3 THR A 528 LEU A 544 1 17 HELIX 4 4 LEU A 545 GLY A 547 5 3 HELIX 5 5 PRO A 570 LYS A 584 1 15 HELIX 6 6 SER A 621 ARG A 644 1 24 HELIX 7 7 HIS A 651 GLY A 653 5 3 HELIX 8 8 GLU A 708 THR A 712 5 5 HELIX 9 9 ASP A 716 ASN A 730 1 15 HELIX 10 10 PRO A 738 GLN A 755 1 18 HELIX 11 11 THR A 764 MET A 781 1 18 HELIX 12 12 LEU A 782 PHE A 784 5 3 HELIX 13 13 SER A 786 HIS A 794 1 9 HELIX 14 14 SER A 795 LYS A 798 5 4 SHEET 1 A 6 VAL A 473 PRO A 474 0 SHEET 2 A 6 LEU A 559 GLN A 566 1 O CYS A 564 N VAL A 473 SHEET 3 A 6 LEU A 599 GLU A 606 -1 O VAL A 602 N HIS A 563 SHEET 4 A 6 THR A 506 ILE A 515 -1 N ALA A 509 O PHE A 605 SHEET 5 A 6 GLY A 496 ALA A 503 -1 N PHE A 499 O ILE A 510 SHEET 6 A 6 GLU A 488 GLY A 493 -1 N GLU A 488 O GLN A 500 SHEET 1 B 3 ILE A 610 ASP A 611 0 SHEET 2 B 3 VAL A 655 LYS A 659 -1 O LEU A 657 N ILE A 610 SHEET 3 B 3 LEU A 681 ILE A 685 -1 O SER A 684 N LEU A 656 SHEET 1 C 2 LYS A 664 LEU A 669 0 SHEET 2 C 2 LYS A 672 PRO A 677 -1 O ILE A 676 N LEU A 665 SHEET 1 D 2 ARG A 692 ARG A 695 0 SHEET 2 D 2 ILE A 698 PHE A 701 -1 O VAL A 700 N LEU A 693 SITE 1 AC1 7 HOH A 61 HOH A 150 HOH A 293 ASP A 649 SITE 2 AC1 7 HIS A 651 ASP A 687 HOH A 802 SITE 1 AC2 19 HOH A 3 HOH A 9 HOH A 64 HOH A 230 SITE 2 AC2 19 ILE A 490 GLY A 491 GLU A 492 PHE A 495 SITE 3 AC2 19 ALA A 509 PHE A 605 GLU A 606 PHE A 607 SITE 4 AC2 19 GLY A 608 GLY A 609 ASP A 611 GLY A 653 SITE 5 AC2 19 LEU A 656 ILE A 686 IOD A 800 SITE 1 AC3 3 HOH A 292 LYS A 511 5ID A 799 SITE 1 AC4 6 HOH A 297 HOH A 298 THR A 553 GLN A 631 SITE 2 AC4 6 SER A 635 GLN A 682 SITE 1 AC5 5 ASN A 560 GLU A 604 GLU A 776 ARG A 779 SITE 2 AC5 5 THR A 780 CRYST1 69.034 78.486 87.048 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014486 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011488 0.00000