HEADER OXIDOREDUCTASE 20-AUG-09 3IQD TITLE STRUCTURE OF OCTOPINE-DEHYDROGENASE IN COMPLEX WITH NADH AND AGMATINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OCTOPINE DEHYDROGENASE; COMPND 3 CHAIN: B; COMPND 4 EC: 1.5.1.11; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PECTEN MAXIMUS; SOURCE 3 ORGANISM_COMMON: KING SCALLOP; SOURCE 4 ORGANISM_TAXID: 6579; SOURCE 5 GENE: ODH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS OCTOPINE, DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.H.J.SMITS,T.MEYER,A.MUELLER,D.WILLBOLD,M.K.GRIESHABER,L.SCHMITT REVDAT 4 01-NOV-23 3IQD 1 REMARK SEQADV REVDAT 3 06-NOV-13 3IQD 1 HET HETNAM HETATM VERSN REVDAT 2 08-DEC-10 3IQD 1 JRNL REVDAT 1 25-AUG-10 3IQD 0 JRNL AUTH S.H.J.SMITS,T.MEYER,A.MUELLER,N.VAN OS,M.STOLDT,D.WILLBOLD, JRNL AUTH 2 L.SCHMITT,M.K.GRIESHABER JRNL TITL INSIGHTS INTO THE MECHANISM OF LIGAND BINDING TO OCTOPINE JRNL TITL 2 DEHYDROGENASE FROM PECTEN MAXIMUS BY NMR AND CRYSTALLOGRAPHY JRNL REF PLOS ONE V. 5 12312 2010 JRNL REFN ESSN 1932-6203 JRNL PMID 20808820 JRNL DOI 10.1371/JOURNAL.PONE.0012312 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 599 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 859 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.4230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3086 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.34000 REMARK 3 B22 (A**2) : 0.34000 REMARK 3 B33 (A**2) : -0.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.385 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.262 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.476 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.842 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3213 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4368 ; 1.074 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 402 ; 5.092 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;38.362 ;24.504 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 520 ;15.948 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.797 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 491 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2403 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1516 ; 0.190 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2183 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 94 ; 0.108 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 60 ; 0.154 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2048 ; 0.233 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3213 ; 0.418 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1319 ; 0.509 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1155 ; 0.871 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 199 REMARK 3 ORIGIN FOR THE GROUP (A): 37.4420 18.0650 -8.5440 REMARK 3 T TENSOR REMARK 3 T11: 0.1602 T22: 0.1543 REMARK 3 T33: 0.1136 T12: 0.0126 REMARK 3 T13: 0.0214 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.8424 L22: 1.9601 REMARK 3 L33: 1.5646 L12: 0.6839 REMARK 3 L13: -0.2507 L23: -0.1588 REMARK 3 S TENSOR REMARK 3 S11: 0.0543 S12: 0.0279 S13: 0.0792 REMARK 3 S21: 0.0325 S22: -0.0360 S23: 0.0189 REMARK 3 S31: -0.0813 S32: 0.1255 S33: -0.0184 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 200 B 404 REMARK 3 ORIGIN FOR THE GROUP (A): 22.9550 3.7930 -23.5200 REMARK 3 T TENSOR REMARK 3 T11: 0.1227 T22: 0.1481 REMARK 3 T33: 0.1655 T12: -0.0498 REMARK 3 T13: -0.0112 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.2799 L22: 1.0172 REMARK 3 L33: 2.8185 L12: -0.3006 REMARK 3 L13: 0.1357 L23: -0.6984 REMARK 3 S TENSOR REMARK 3 S11: 0.0396 S12: 0.2378 S13: 0.0213 REMARK 3 S21: 0.0559 S22: 0.0352 S23: 0.0719 REMARK 3 S31: 0.1015 S32: -0.1360 S33: -0.0748 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IQD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054733. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5-6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11368 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 74.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.36300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3C7C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM CITRATE, 30% PEG 400, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.70000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.10000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.10000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.35000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.10000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.10000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.05000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.10000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.10000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.35000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.10000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.10000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 88.05000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.70000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 36 -118.05 46.33 REMARK 500 GLN B 118 176.36 62.29 REMARK 500 PHE B 234 -96.20 -86.98 REMARK 500 ASN B 323 -142.79 32.71 REMARK 500 HIS B 401 52.41 127.84 REMARK 500 HIS B 403 86.73 97.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG2 B 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3C7A RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH ODH-NADH REMARK 900 RELATED ID: 3C7C RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH ODH-NADH-L-ARGININE REMARK 900 RELATED ID: 3C7D RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH ODH-NADH-PYRUVATE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE ARE CONFLICTS BETWEEN THE REPORTED SEQUENCE AND DATABASE REMARK 999 REFERENCE SEQUENCE. THERE ARE SEVERAL ISOFORMS KNOWN THAT DOES NOT REMARK 999 AGREE WITH THE DATABASE. THE SEQUENCE IN THE PDB IS THE CORRECT ONE REMARK 999 AND MAYBE THE MISTAKE IS IN THE DATABASE. DBREF 3IQD B 1 399 UNP Q9BHM6 Q9BHM6_PECMA 1 399 SEQADV 3IQD ASP B 272 UNP Q9BHM6 VAL 272 SEE REMARK 999 SEQADV 3IQD ALA B 315 UNP Q9BHM6 GLY 315 SEE REMARK 999 SEQADV 3IQD HIS B 400 UNP Q9BHM6 EXPRESSION TAG SEQADV 3IQD HIS B 401 UNP Q9BHM6 EXPRESSION TAG SEQADV 3IQD HIS B 402 UNP Q9BHM6 EXPRESSION TAG SEQADV 3IQD HIS B 403 UNP Q9BHM6 EXPRESSION TAG SEQADV 3IQD HIS B 404 UNP Q9BHM6 EXPRESSION TAG SEQRES 1 B 404 MET THR VAL LYS VAL CYS VAL CYS GLY GLY GLY ASN GLY SEQRES 2 B 404 ALA HIS THR LEU SER GLY LEU ALA ALA SER ARG ASP GLY SEQRES 3 B 404 VAL GLU VAL ARG VAL LEU THR LEU PHE ALA ASP GLU ALA SEQRES 4 B 404 GLU ARG TRP THR LYS ALA LEU GLY ALA ASP GLU LEU THR SEQRES 5 B 404 VAL ILE VAL ASN GLU LYS ASP GLY THR GLN THR GLU VAL SEQRES 6 B 404 LYS SER ARG PRO LYS VAL ILE THR LYS ASP PRO GLU ILE SEQRES 7 B 404 ALA ILE SER GLY ALA ASP VAL VAL ILE LEU THR VAL PRO SEQRES 8 B 404 ALA PHE ALA HIS GLU GLY TYR PHE GLN ALA MET ALA PRO SEQRES 9 B 404 TYR VAL GLN ASP SER ALA LEU ILE VAL GLY LEU PRO SER SEQRES 10 B 404 GLN ALA GLY PHE GLU PHE GLN CYS ARG ASP ILE LEU GLY SEQRES 11 B 404 ASP LYS ALA ALA ALA VAL SER MET MET SER PHE GLU THR SEQRES 12 B 404 LEU PRO TRP ALA CYS ARG ILE LYS GLU PHE GLY ARG LYS SEQRES 13 B 404 VAL GLU VAL LEU GLY THR LYS SER VAL LEU ALA ALA SER SEQRES 14 B 404 LEU ILE LYS GLY THR ALA LYS THR VAL ASP PRO LEU SER SEQRES 15 B 404 THR LEU GLN MET LEU HIS GLY ALA GLU PRO VAL PHE ARG SEQRES 16 B 404 LEU ALA LYS HIS PHE LEU GLU MET LEU ILE MET SER TYR SEQRES 17 B 404 SER PHE VAL HIS PRO ALA ILE LEU PHE GLY ARG TRP GLY SEQRES 18 B 404 SER TRP ASP GLY LYS PRO VAL PRO GLU ALA PRO LEU PHE SEQRES 19 B 404 TYR GLN GLY ILE ASP GLN ALA THR ALA ASP MET LEU THR SEQRES 20 B 404 ALA CYS SER ASN GLU CYS LYS ASP VAL ALA ASN ALA ILE SEQRES 21 B 404 MET ALA ALA CYS PRO GLY ASN ASP LEU SER ASP ASP LYS SEQRES 22 B 404 ASP ILE TYR GLN TRP TYR LEU GLU TYR TYR HIS GLU ASP SEQRES 23 B 404 ILE GLN ASP ASP HIS ASP LEU TYR HIS ALA ILE THR THR SEQRES 24 B 404 ASN LYS SER TYR LYS GLY LEU VAL HIS PRO VAL LYS ALA SEQRES 25 B 404 VAL ASP ALA GLY VAL ALA PRO ASP PHE GLY ASN ARG TYR SEQRES 26 B 404 LEU THR GLU ASP ILE PRO MET GLY MET ILE VAL PHE LYS SEQRES 27 B 404 GLY VAL ALA ILE ALA ALA GLY VAL ALA ILE PRO SER ASN SEQRES 28 B 404 ASP LYS LEU ILE MET TRP ALA GLN GLU LYS ILE GLY LYS SEQRES 29 B 404 GLU TYR LEU VAL ASP GLY ALA LEU THR GLY LYS ASP VAL SEQRES 30 B 404 ALA THR THR ARG CYS PRO GLN ARG TYR GLY PHE ASN THR SEQRES 31 B 404 LEU ASP ALA ILE LEU THR GLY LYS LYS HIS HIS HIS HIS SEQRES 32 B 404 HIS HET NAI B 405 44 HET AG2 B 406 9 HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM AG2 AGMATINE HETSYN NAI NADH HETSYN AG2 (4-AMINOBUTYL)GUANIDINE FORMUL 2 NAI C21 H29 N7 O14 P2 FORMUL 3 AG2 C5 H14 N4 HELIX 1 1 GLY B 11 SER B 23 1 13 HELIX 2 2 ASP B 37 GLY B 47 1 11 HELIX 3 3 ASP B 75 SER B 81 1 7 HELIX 4 4 PRO B 91 PHE B 93 5 3 HELIX 5 5 ALA B 94 ALA B 103 1 10 HELIX 6 6 GLY B 120 GLY B 130 1 11 HELIX 7 7 ASP B 131 ALA B 133 5 3 HELIX 8 8 ASP B 179 GLY B 189 1 11 HELIX 9 9 HIS B 199 MET B 206 1 8 HELIX 10 10 PHE B 210 GLY B 221 1 12 HELIX 11 11 PHE B 234 ILE B 238 5 5 HELIX 12 12 ASP B 239 CYS B 264 1 26 HELIX 13 13 ASP B 274 HIS B 284 1 11 HELIX 14 14 ASP B 292 THR B 299 1 8 HELIX 15 15 ASN B 300 LYS B 304 5 5 HELIX 16 16 GLY B 333 GLY B 345 1 13 HELIX 17 17 ILE B 348 ILE B 362 1 15 HELIX 18 18 ASP B 376 THR B 380 5 5 HELIX 19 19 CYS B 382 GLY B 387 5 6 HELIX 20 20 THR B 390 GLY B 397 1 8 SHEET 1 A 8 VAL B 71 THR B 73 0 SHEET 2 A 8 VAL B 27 LEU B 32 1 N VAL B 31 O VAL B 71 SHEET 3 A 8 VAL B 3 CYS B 8 1 N VAL B 7 O LEU B 32 SHEET 4 A 8 VAL B 85 LEU B 88 1 O ILE B 87 N CYS B 8 SHEET 5 A 8 LEU B 111 GLY B 114 1 O VAL B 113 N VAL B 86 SHEET 6 A 8 SER B 137 PHE B 141 1 O SER B 137 N ILE B 112 SHEET 7 A 8 VAL B 165 ILE B 171 -1 O SER B 169 N SER B 140 SHEET 8 A 8 VAL B 193 LEU B 196 1 O ARG B 195 N LEU B 166 SHEET 1 B 4 GLN B 62 SER B 67 0 SHEET 2 B 4 LEU B 51 ASN B 56 -1 N VAL B 53 O VAL B 65 SHEET 3 B 4 LYS B 156 THR B 162 1 O VAL B 159 N ILE B 54 SHEET 4 B 4 TRP B 146 GLU B 152 -1 N ALA B 147 O GLY B 161 SHEET 1 C 2 VAL B 310 VAL B 313 0 SHEET 2 C 2 GLY B 316 PRO B 319 -1 O ALA B 318 N LYS B 311 CISPEP 1 LEU B 115 PRO B 116 0 -3.17 CISPEP 2 GLU B 191 PRO B 192 0 -2.39 CISPEP 3 HIS B 400 HIS B 401 0 -4.56 CISPEP 4 HIS B 402 HIS B 403 0 14.29 SITE 1 AC1 15 GLY B 10 GLY B 11 ASN B 12 GLY B 13 SITE 2 AC1 15 PHE B 35 GLU B 38 PRO B 91 PHE B 93 SITE 3 AC1 15 PRO B 116 LEU B 144 TRP B 146 ALA B 147 SITE 4 AC1 15 CYS B 148 ARG B 324 HIS B 403 SITE 1 AC2 8 GLU B 142 THR B 143 MET B 206 SER B 207 SITE 2 AC2 8 HIS B 212 TRP B 278 HIS B 403 HIS B 404 CRYST1 96.200 96.200 117.400 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010395 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010395 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008518 0.00000