HEADER LYASE 21-AUG-09 3IR3 TITLE CRYSTAL STRUCTURE OF HUMAN 3-HYDROXYACYL-THIOESTER DEHYDRATASE 2 TITLE 2 (HTD2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-HYDROXYACYL-THIOESTER DEHYDRATASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HTD2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HTD2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS HTD2, 3-HYDROXYACYL-THIOESTER DEHYDRATASE 2, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR E.UGOCHUKWU,R.COCKING,N.BURGESS-BROWN,E.PILKA,J.MUNIZ,T.KROJER, AUTHOR 2 A.CHAIKUAD,O.GILEADI,F.VON DELFT,C.BOUNTRA,C.H.ARROWSMITH,J.WEIGELT, AUTHOR 3 A.EDWARDS,K.L.KAVANAGH,U.OPPERMANN,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 4 (SGC) REVDAT 5 06-SEP-23 3IR3 1 REMARK DBREF REVDAT 4 01-NOV-17 3IR3 1 REMARK REVDAT 3 13-JUL-11 3IR3 1 VERSN REVDAT 2 02-JUN-10 3IR3 1 AUTHOR REVDAT 1 22-SEP-09 3IR3 0 JRNL AUTH E.UGOCHUKWU,R.COCKING,N.BURGESS-BROWN,E.PILKA,K.L.KAVANAGH, JRNL AUTH 2 U.OPPERMANN JRNL TITL CRYSTAL STRUCTURE OF HUMAN 3-HYDROXYACYL-THIOESTER JRNL TITL 2 DEHYDRATASE 2 (HTD2) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0089 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 28437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1520 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2113 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1840 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 237 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.05000 REMARK 3 B22 (A**2) : -1.05000 REMARK 3 B33 (A**2) : 1.58000 REMARK 3 B12 (A**2) : -0.53000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.384 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1927 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1285 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2624 ; 1.452 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3189 ; 1.072 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 264 ; 5.296 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 56 ;30.758 ;23.929 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 345 ;12.552 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ; 7.705 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 328 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2092 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 353 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1260 ; 3.270 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 510 ; 1.575 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2057 ; 4.147 ; 7.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 667 ; 5.464 ; 9.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 557 ; 6.392 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 28 5 REMARK 3 1 B 3 B 28 5 REMARK 3 2 A 51 A 136 5 REMARK 3 2 B 51 B 136 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 644 ; 0.14 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 709 ; 0.46 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 644 ; 0.78 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 709 ; 0.70 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): -45.3046 19.1068 -3.5518 REMARK 3 T TENSOR REMARK 3 T11: 0.0745 T22: 0.0257 REMARK 3 T33: 0.0769 T12: 0.0253 REMARK 3 T13: 0.0307 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.9562 L22: 1.0565 REMARK 3 L33: 2.7409 L12: 0.3191 REMARK 3 L13: 0.9958 L23: 0.4982 REMARK 3 S TENSOR REMARK 3 S11: 0.0683 S12: -0.0577 S13: 0.0684 REMARK 3 S21: 0.0826 S22: -0.0455 S23: 0.1626 REMARK 3 S31: 0.0479 S32: -0.1754 S33: -0.0227 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): -34.0455 21.9760 -4.5433 REMARK 3 T TENSOR REMARK 3 T11: 0.0165 T22: 0.0364 REMARK 3 T33: 0.0286 T12: -0.0053 REMARK 3 T13: -0.0061 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 2.0229 L22: 4.1723 REMARK 3 L33: 3.1822 L12: 1.2605 REMARK 3 L13: -1.8583 L23: -0.9269 REMARK 3 S TENSOR REMARK 3 S11: 0.1001 S12: -0.0211 S13: 0.0338 REMARK 3 S21: 0.0040 S22: -0.1129 S23: -0.1988 REMARK 3 S31: -0.1106 S32: 0.2283 S33: 0.0127 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 119 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): -34.6045 19.8851 3.4996 REMARK 3 T TENSOR REMARK 3 T11: 0.0649 T22: 0.0867 REMARK 3 T33: 0.0232 T12: 0.0017 REMARK 3 T13: -0.0077 T23: 0.0331 REMARK 3 L TENSOR REMARK 3 L11: 5.9759 L22: 3.6639 REMARK 3 L33: 2.2206 L12: 3.5619 REMARK 3 L13: -1.0457 L23: -0.8503 REMARK 3 S TENSOR REMARK 3 S11: 0.1707 S12: -0.5917 S13: -0.2524 REMARK 3 S21: 0.2352 S22: -0.3105 S23: -0.1440 REMARK 3 S31: -0.0071 S32: 0.3182 S33: 0.1398 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): -28.0440 24.2427 -3.0278 REMARK 3 T TENSOR REMARK 3 T11: 0.0400 T22: 0.0342 REMARK 3 T33: 0.0097 T12: -0.0014 REMARK 3 T13: -0.0150 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 3.9909 L22: 4.9722 REMARK 3 L33: 3.0036 L12: 3.2167 REMARK 3 L13: -2.2077 L23: -2.9211 REMARK 3 S TENSOR REMARK 3 S11: 0.0935 S12: -0.1838 S13: 0.0420 REMARK 3 S21: 0.1995 S22: -0.0885 S23: -0.0721 REMARK 3 S31: -0.0935 S32: 0.2453 S33: -0.0050 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 34 B 50 REMARK 3 ORIGIN FOR THE GROUP (A): -45.2555 9.2733 -21.9387 REMARK 3 T TENSOR REMARK 3 T11: 0.1340 T22: 0.0734 REMARK 3 T33: 0.1937 T12: -0.0801 REMARK 3 T13: -0.0555 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 2.3662 L22: 8.3423 REMARK 3 L33: 2.0113 L12: -4.4280 REMARK 3 L13: -0.3330 L23: 0.7593 REMARK 3 S TENSOR REMARK 3 S11: 0.2457 S12: 0.0205 S13: -0.0987 REMARK 3 S21: -0.4994 S22: -0.0094 S23: 0.1799 REMARK 3 S31: 0.2960 S32: -0.1800 S33: -0.2363 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 51 B 65 REMARK 3 ORIGIN FOR THE GROUP (A): -46.9628 29.0307 -9.5041 REMARK 3 T TENSOR REMARK 3 T11: 0.1097 T22: 0.0500 REMARK 3 T33: 0.1278 T12: 0.0567 REMARK 3 T13: 0.0382 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 3.0275 L22: 3.1559 REMARK 3 L33: 10.0651 L12: 1.3131 REMARK 3 L13: 2.5403 L23: 0.2487 REMARK 3 S TENSOR REMARK 3 S11: -0.0653 S12: 0.0547 S13: 0.4030 REMARK 3 S21: 0.1229 S22: 0.0696 S23: 0.1736 REMARK 3 S31: -0.6234 S32: -0.0786 S33: -0.0043 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 66 B 126 REMARK 3 ORIGIN FOR THE GROUP (A): -40.7045 16.9687 -16.7673 REMARK 3 T TENSOR REMARK 3 T11: 0.0090 T22: 0.0308 REMARK 3 T33: 0.0363 T12: 0.0061 REMARK 3 T13: -0.0082 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 1.1701 L22: 3.1994 REMARK 3 L33: 2.8410 L12: 0.2464 REMARK 3 L13: 0.0989 L23: -1.6165 REMARK 3 S TENSOR REMARK 3 S11: -0.0317 S12: 0.0709 S13: 0.0481 REMARK 3 S21: -0.0926 S22: 0.1226 S23: 0.2398 REMARK 3 S31: 0.0115 S32: -0.0490 S33: -0.0910 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 127 B 167 REMARK 3 ORIGIN FOR THE GROUP (A): -36.8502 3.8332 -16.9616 REMARK 3 T TENSOR REMARK 3 T11: 0.0694 T22: 0.0502 REMARK 3 T33: 0.0196 T12: 0.0194 REMARK 3 T13: -0.0053 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.9222 L22: 7.9500 REMARK 3 L33: 2.5887 L12: 0.5368 REMARK 3 L13: -0.4275 L23: -4.1021 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: 0.1302 S13: -0.1077 REMARK 3 S21: -0.4482 S22: -0.1145 S23: -0.1943 REMARK 3 S31: 0.2851 S32: 0.1438 S33: 0.1154 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IR3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054759. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29964 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 43.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.50100 REMARK 200 R SYM FOR SHELL (I) : 0.50100 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1IQ6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5% JEFF2001; 1.1M NA(MALONATE); 0.1M REMARK 280 HEPES PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.90667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.81333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.86000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 64.76667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 12.95333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 21 REMARK 465 MET A 22 REMARK 465 LEU A 23 REMARK 465 PRO A 24 REMARK 465 VAL A 25 REMARK 465 LEU A 26 REMARK 465 THR A 27 REMARK 465 LEU A 28 REMARK 465 GLN A 29 REMARK 465 HIS A 30 REMARK 465 PHE A 31 REMARK 465 GLN A 32 REMARK 465 HIS A 33 REMARK 465 ALA A 73 REMARK 465 LYS A 74 REMARK 465 HIS A 75 REMARK 465 THR A 76 REMARK 465 LYS A 77 REMARK 465 PHE A 78 REMARK 465 GLY A 79 REMARK 465 ASN A 80 REMARK 465 SER A 168 REMARK 465 SER B 21 REMARK 465 MET B 22 REMARK 465 LEU B 23 REMARK 465 PRO B 24 REMARK 465 VAL B 25 REMARK 465 LEU B 26 REMARK 465 THR B 27 REMARK 465 LEU B 28 REMARK 465 GLN B 29 REMARK 465 HIS B 30 REMARK 465 PHE B 31 REMARK 465 GLN B 32 REMARK 465 HIS B 33 REMARK 465 LEU B 68 REMARK 465 ASN B 69 REMARK 465 GLU B 70 REMARK 465 ASP B 71 REMARK 465 PHE B 72 REMARK 465 ALA B 73 REMARK 465 LYS B 74 REMARK 465 HIS B 75 REMARK 465 THR B 76 REMARK 465 LYS B 77 REMARK 465 PHE B 78 REMARK 465 GLY B 79 REMARK 465 SER B 168 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 35 ND1 CD2 CE1 NE2 REMARK 470 LYS A 37 CE NZ REMARK 470 LEU A 66 CG CD1 CD2 REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 ASP A 71 CG OD1 OD2 REMARK 470 LYS A 132 NZ REMARK 470 GLU A 148 CD OE1 OE2 REMARK 470 LYS A 150 CD CE NZ REMARK 470 LYS B 37 CD CE NZ REMARK 470 ARG B 41 CZ NH1 NH2 REMARK 470 LEU B 66 CD1 CD2 REMARK 470 ASN B 80 CG OD1 ND2 REMARK 470 LYS B 132 NZ REMARK 470 GLU B 148 CD OE1 OE2 REMARK 470 LYS B 150 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 62 -116.23 -116.53 REMARK 500 PHE A 136 -1.97 73.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IQ6 RELATED DB: PDB REMARK 900 (R)-HYDRATASE FROM A. CAVIAE INVOLVED IN PHA BIOSYNTHESIS DBREF 3IR3 A 21 168 PDB 3IR3 3IR3 21 168 DBREF 3IR3 B 21 168 PDB 3IR3 3IR3 21 168 SEQRES 1 A 148 SER MET LEU PRO VAL LEU THR LEU GLN HIS PHE GLN HIS SEQRES 2 A 148 MET HIS ILE LYS VAL GLY ASP ARG ALA GLU LEU ARG ARG SEQRES 3 A 148 ALA PHE THR GLN THR ASP VAL ALA THR PHE SER GLU LEU SEQRES 4 A 148 THR GLY ASP VAL ASN PRO LEU HIS LEU ASN GLU ASP PHE SEQRES 5 A 148 ALA LYS HIS THR LYS PHE GLY ASN THR ILE VAL HIS GLY SEQRES 6 A 148 VAL LEU ILE ASN GLY LEU ILE SER ALA LEU LEU GLY THR SEQRES 7 A 148 LYS MET PRO GLY PRO GLY CYS VAL PHE LEU SER GLN GLU SEQRES 8 A 148 ILE SER PHE PRO ALA PRO LEU TYR ILE GLY GLU VAL VAL SEQRES 9 A 148 LEU ALA SER ALA GLU VAL LYS LYS LEU LYS ARG PHE ILE SEQRES 10 A 148 ALA ILE ILE ALA VAL SER CYS SER VAL ILE GLU SER LYS SEQRES 11 A 148 LYS THR VAL MET GLU GLY TRP VAL LYS VAL MET VAL PRO SEQRES 12 A 148 GLU ALA SER LYS SER SEQRES 1 B 148 SER MET LEU PRO VAL LEU THR LEU GLN HIS PHE GLN HIS SEQRES 2 B 148 MET HIS ILE LYS VAL GLY ASP ARG ALA GLU LEU ARG ARG SEQRES 3 B 148 ALA PHE THR GLN THR ASP VAL ALA THR PHE SER GLU LEU SEQRES 4 B 148 THR GLY ASP VAL ASN PRO LEU HIS LEU ASN GLU ASP PHE SEQRES 5 B 148 ALA LYS HIS THR LYS PHE GLY ASN THR ILE VAL HIS GLY SEQRES 6 B 148 VAL LEU ILE ASN GLY LEU ILE SER ALA LEU LEU GLY THR SEQRES 7 B 148 LYS MET PRO GLY PRO GLY CYS VAL PHE LEU SER GLN GLU SEQRES 8 B 148 ILE SER PHE PRO ALA PRO LEU TYR ILE GLY GLU VAL VAL SEQRES 9 B 148 LEU ALA SER ALA GLU VAL LYS LYS LEU LYS ARG PHE ILE SEQRES 10 B 148 ALA ILE ILE ALA VAL SER CYS SER VAL ILE GLU SER LYS SEQRES 11 B 148 LYS THR VAL MET GLU GLY TRP VAL LYS VAL MET VAL PRO SEQRES 12 B 148 GLU ALA SER LYS SER HET MLI A 1 7 HETNAM MLI MALONATE ION FORMUL 3 MLI C3 H2 O4 2- FORMUL 4 HOH *237(H2 O) HELIX 1 1 THR A 49 GLY A 61 1 13 HELIX 2 2 PRO A 65 ASN A 69 5 5 HELIX 3 3 HIS A 84 LYS A 99 1 16 HELIX 4 4 THR B 49 GLY B 61 1 13 HELIX 5 5 HIS B 84 LYS B 99 1 16 SHEET 1 A10 ARG A 41 ALA A 47 0 SHEET 2 A10 VAL A 123 LYS A 134 -1 O VAL A 124 N ARG A 46 SHEET 3 A10 ILE A 137 VAL A 146 -1 O SER A 145 N LEU A 125 SHEET 4 A10 THR A 152 MET A 161 -1 O VAL A 158 N ILE A 140 SHEET 5 A10 VAL A 106 SER A 113 -1 N LEU A 108 O LYS A 159 SHEET 6 A10 VAL B 106 SER B 113 -1 O ILE B 112 N GLN A 110 SHEET 7 A10 THR B 152 MET B 161 -1 O LYS B 159 N LEU B 108 SHEET 8 A10 ILE B 137 VAL B 146 -1 N ILE B 140 O VAL B 158 SHEET 9 A10 VAL B 124 LYS B 134 -1 N LEU B 125 O SER B 145 SHEET 10 A10 ARG B 41 ARG B 46 -1 N ARG B 46 O VAL B 124 CISPEP 1 MET A 100 PRO A 101 0 1.03 CISPEP 2 MET A 100 PRO A 101 0 0.65 CISPEP 3 MET B 100 PRO B 101 0 6.28 SITE 1 AC1 8 LYS A 134 LYS A 159 HOH A 227 HOH A 250 SITE 2 AC1 8 HOH A 259 LYS B 134 LYS B 159 HOH B 266 CRYST1 99.880 99.880 77.720 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010012 0.005780 0.000000 0.00000 SCALE2 0.000000 0.011561 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012867 0.00000