data_3IRA # _entry.id 3IRA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3IRA RCSB RCSB054766 WWPDB D_1000054766 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC61675.3 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3IRA _pdbx_database_status.recvd_initial_deposition_date 2009-08-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, R.' 1 'Wu, R.' 2 'Keigher, L.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'The crystal structure of one domain of the conserved protein from Methanosarcina mazei Go1' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Zhang, R.' 1 primary 'Wu, R.' 2 primary 'Keigher, L.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 3IRA _cell.length_a 63.843 _cell.length_b 63.843 _cell.length_c 95.859 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3IRA _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Conserved protein' 20115.955 1 ? ? ? ? 2 water nat water 18.015 73 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AEPNRLIKEKSPYLLQHAYNPVDWYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKV DREERPDIDNIYMTVCQIILGRGGWPLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIKEIWEQQHEEVLDSAEKI TSTIQEMIKESSG ; _entity_poly.pdbx_seq_one_letter_code_can ;AEPNRLIKEKSPYLLQHAYNPVDWYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKV DREERPDIDNIYMTVCQIILGRGGWPLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIKEIWEQQHEEVLDSAEKI TSTIQEMIKESSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC61675.3 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 GLU n 1 3 PRO n 1 4 ASN n 1 5 ARG n 1 6 LEU n 1 7 ILE n 1 8 LYS n 1 9 GLU n 1 10 LYS n 1 11 SER n 1 12 PRO n 1 13 TYR n 1 14 LEU n 1 15 LEU n 1 16 GLN n 1 17 HIS n 1 18 ALA n 1 19 TYR n 1 20 ASN n 1 21 PRO n 1 22 VAL n 1 23 ASP n 1 24 TRP n 1 25 TYR n 1 26 PRO n 1 27 TRP n 1 28 GLY n 1 29 GLU n 1 30 GLU n 1 31 ALA n 1 32 PHE n 1 33 GLU n 1 34 LYS n 1 35 ALA n 1 36 ARG n 1 37 LYS n 1 38 GLU n 1 39 ASN n 1 40 LYS n 1 41 PRO n 1 42 VAL n 1 43 PHE n 1 44 LEU n 1 45 SER n 1 46 ILE n 1 47 GLY n 1 48 TYR n 1 49 SER n 1 50 THR n 1 51 CYS n 1 52 HIS n 1 53 TRP n 1 54 CYS n 1 55 HIS n 1 56 MET n 1 57 MET n 1 58 ALA n 1 59 HIS n 1 60 GLU n 1 61 SER n 1 62 PHE n 1 63 GLU n 1 64 ASP n 1 65 GLU n 1 66 GLU n 1 67 VAL n 1 68 ALA n 1 69 GLY n 1 70 LEU n 1 71 MET n 1 72 ASN n 1 73 GLU n 1 74 ALA n 1 75 PHE n 1 76 VAL n 1 77 SER n 1 78 ILE n 1 79 LYS n 1 80 VAL n 1 81 ASP n 1 82 ARG n 1 83 GLU n 1 84 GLU n 1 85 ARG n 1 86 PRO n 1 87 ASP n 1 88 ILE n 1 89 ASP n 1 90 ASN n 1 91 ILE n 1 92 TYR n 1 93 MET n 1 94 THR n 1 95 VAL n 1 96 CYS n 1 97 GLN n 1 98 ILE n 1 99 ILE n 1 100 LEU n 1 101 GLY n 1 102 ARG n 1 103 GLY n 1 104 GLY n 1 105 TRP n 1 106 PRO n 1 107 LEU n 1 108 ASN n 1 109 ILE n 1 110 ILE n 1 111 MET n 1 112 THR n 1 113 PRO n 1 114 GLY n 1 115 LYS n 1 116 LYS n 1 117 PRO n 1 118 PHE n 1 119 PHE n 1 120 ALA n 1 121 GLY n 1 122 THR n 1 123 TYR n 1 124 ILE n 1 125 PRO n 1 126 LYS n 1 127 ASN n 1 128 THR n 1 129 ARG n 1 130 PHE n 1 131 ASN n 1 132 GLN n 1 133 ILE n 1 134 GLY n 1 135 MET n 1 136 LEU n 1 137 GLU n 1 138 LEU n 1 139 VAL n 1 140 PRO n 1 141 ARG n 1 142 ILE n 1 143 LYS n 1 144 GLU n 1 145 ILE n 1 146 TRP n 1 147 GLU n 1 148 GLN n 1 149 GLN n 1 150 HIS n 1 151 GLU n 1 152 GLU n 1 153 VAL n 1 154 LEU n 1 155 ASP n 1 156 SER n 1 157 ALA n 1 158 GLU n 1 159 LYS n 1 160 ILE n 1 161 THR n 1 162 SER n 1 163 THR n 1 164 ILE n 1 165 GLN n 1 166 GLU n 1 167 MET n 1 168 ILE n 1 169 LYS n 1 170 GLU n 1 171 SER n 1 172 SER n 1 173 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Methanosarcina frisia' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'GI:20905010, MM_0619' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain Go1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanosarcina mazei' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 192952 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8PZ75_METMA _struct_ref.pdbx_db_accession Q8PZ75 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EPNRLIKEKSPYLLQHAYNPVDWYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVD REERPDIDNIYMTVCQIILGRGGWPLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIKEIWEQQHEEVLDSAEKIT STIQEMIKESSG ; _struct_ref.pdbx_align_begin 10 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3IRA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 173 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8PZ75 _struct_ref_seq.db_align_beg 10 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 181 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 172 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3IRA _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q8PZ75 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3IRA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_percent_sol 49.34 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.2M ammonium acetate, 0.1M HEPES, 25% PEG3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2009-03-09 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9794 1.0 2 0.9796 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9794, 0.9796' # _reflns.entry_id 3IRA _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 53.15 _reflns.d_resolution_high 2.1 _reflns.number_obs 11532 _reflns.number_all 11549 _reflns.percent_possible_obs 99.85 _reflns.pdbx_Rmerge_I_obs 0.112 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 35.92 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 17.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.1 _reflns_shell.d_res_low 2.154 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.63 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.93 _reflns_shell.pdbx_redundancy 10.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 867 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3IRA _refine.ls_number_reflns_obs 11532 _refine.ls_number_reflns_all 11594 _refine.pdbx_ls_sigma_I 1.93 _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 53.15 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 99.85 _refine.ls_R_factor_obs 0.18849 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18696 _refine.ls_R_factor_R_free 0.21783 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 580 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.952 _refine.B_iso_mean 26.189 _refine.aniso_B[1][1] 1.09 _refine.aniso_B[2][2] 1.09 _refine.aniso_B[3][3] -2.18 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.205 _refine.pdbx_overall_ESU_R_Free 0.167 _refine.overall_SU_ML 0.117 _refine.overall_SU_B 9.830 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1408 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 73 _refine_hist.number_atoms_total 1481 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 53.15 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.021 0.022 ? 1447 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1007 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.800 1.949 ? 1959 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.006 3.002 ? 2455 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.757 5.000 ? 171 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.745 24.789 ? 71 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.161 15.000 ? 260 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.725 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.127 0.200 ? 204 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.021 ? 1584 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 282 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.906 1.500 ? 861 'X-RAY DIFFRACTION' ? r_mcbond_other 0.240 1.500 ? 340 'X-RAY DIFFRACTION' ? r_mcangle_it 1.806 2.000 ? 1401 'X-RAY DIFFRACTION' ? r_scbond_it 3.093 3.000 ? 586 'X-RAY DIFFRACTION' ? r_scangle_it 5.151 4.500 ? 558 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.100 _refine_ls_shell.d_res_low 2.154 _refine_ls_shell.number_reflns_R_work 828 _refine_ls_shell.R_factor_R_work 0.201 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.250 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 39 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3IRA _struct.title 'The crystal structure of one domain of the conserved protein from Methanosarcina mazei Go1' _struct.pdbx_descriptor 'Conserved protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3IRA _struct_keywords.pdbx_keywords 'structural genomics, unknown function' _struct_keywords.text ;conserved protein, Methanosarcina mazei, structural genomics, PSI, MCSG, Protein Structure Initiative, Midwest Center for Structural Genomics, unknown function ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 4 ? GLU A 9 ? ASN A 3 GLU A 8 5 ? 6 HELX_P HELX_P2 2 SER A 11 ? GLN A 16 ? SER A 10 GLN A 15 1 ? 6 HELX_P HELX_P3 3 GLY A 28 ? ASN A 39 ? GLY A 27 ASN A 38 1 ? 12 HELX_P HELX_P4 4 CYS A 51 ? SER A 61 ? CYS A 50 SER A 60 1 ? 11 HELX_P HELX_P5 5 ASP A 64 ? PHE A 75 ? ASP A 63 PHE A 74 1 ? 12 HELX_P HELX_P6 6 ARG A 85 ? GLY A 101 ? ARG A 84 GLY A 100 1 ? 17 HELX_P HELX_P7 7 GLY A 134 ? GLN A 149 ? GLY A 133 GLN A 148 1 ? 16 HELX_P HELX_P8 8 GLN A 149 ? ILE A 160 ? GLN A 148 ILE A 159 1 ? 12 HELX_P HELX_P9 9 SER A 162 ? SER A 172 ? SER A 161 SER A 171 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 51 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 54 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 50 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 53 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.226 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TRP _struct_mon_prot_cis.label_seq_id 105 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TRP _struct_mon_prot_cis.auth_seq_id 104 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 106 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 105 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -3.42 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 76 ? ASP A 81 ? VAL A 75 ASP A 80 A 2 VAL A 42 ? GLY A 47 ? VAL A 41 GLY A 46 A 3 LEU A 107 ? MET A 111 ? LEU A 106 MET A 110 A 4 PRO A 117 ? GLY A 121 ? PRO A 116 GLY A 120 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 78 ? O ILE A 77 N PHE A 43 ? N PHE A 42 A 2 3 N LEU A 44 ? N LEU A 43 O ILE A 109 ? O ILE A 108 A 3 4 N ASN A 108 ? N ASN A 107 O GLY A 121 ? O GLY A 120 # _database_PDB_matrix.entry_id 3IRA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3IRA _atom_sites.fract_transf_matrix[1][1] 0.015663 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015663 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010432 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 0 0 ALA ALA A . n A 1 2 GLU 2 1 1 GLU GLU A . n A 1 3 PRO 3 2 2 PRO PRO A . n A 1 4 ASN 4 3 3 ASN ASN A . n A 1 5 ARG 5 4 4 ARG ARG A . n A 1 6 LEU 6 5 5 LEU LEU A . n A 1 7 ILE 7 6 6 ILE ILE A . n A 1 8 LYS 8 7 7 LYS LYS A . n A 1 9 GLU 9 8 8 GLU GLU A . n A 1 10 LYS 10 9 9 LYS LYS A . n A 1 11 SER 11 10 10 SER SER A . n A 1 12 PRO 12 11 11 PRO PRO A . n A 1 13 TYR 13 12 12 TYR TYR A . n A 1 14 LEU 14 13 13 LEU LEU A . n A 1 15 LEU 15 14 14 LEU LEU A . n A 1 16 GLN 16 15 15 GLN GLN A . n A 1 17 HIS 17 16 16 HIS HIS A . n A 1 18 ALA 18 17 17 ALA ALA A . n A 1 19 TYR 19 18 18 TYR TYR A . n A 1 20 ASN 20 19 19 ASN ASN A . n A 1 21 PRO 21 20 20 PRO PRO A . n A 1 22 VAL 22 21 21 VAL VAL A . n A 1 23 ASP 23 22 22 ASP ASP A . n A 1 24 TRP 24 23 23 TRP TRP A . n A 1 25 TYR 25 24 24 TYR TYR A . n A 1 26 PRO 26 25 25 PRO PRO A . n A 1 27 TRP 27 26 26 TRP TRP A . n A 1 28 GLY 28 27 27 GLY GLY A . n A 1 29 GLU 29 28 28 GLU GLU A . n A 1 30 GLU 30 29 29 GLU GLU A . n A 1 31 ALA 31 30 30 ALA ALA A . n A 1 32 PHE 32 31 31 PHE PHE A . n A 1 33 GLU 33 32 32 GLU GLU A . n A 1 34 LYS 34 33 33 LYS LYS A . n A 1 35 ALA 35 34 34 ALA ALA A . n A 1 36 ARG 36 35 35 ARG ARG A . n A 1 37 LYS 37 36 36 LYS LYS A . n A 1 38 GLU 38 37 37 GLU GLU A . n A 1 39 ASN 39 38 38 ASN ASN A . n A 1 40 LYS 40 39 39 LYS LYS A . n A 1 41 PRO 41 40 40 PRO PRO A . n A 1 42 VAL 42 41 41 VAL VAL A . n A 1 43 PHE 43 42 42 PHE PHE A . n A 1 44 LEU 44 43 43 LEU LEU A . n A 1 45 SER 45 44 44 SER SER A . n A 1 46 ILE 46 45 45 ILE ILE A . n A 1 47 GLY 47 46 46 GLY GLY A . n A 1 48 TYR 48 47 47 TYR TYR A . n A 1 49 SER 49 48 48 SER SER A . n A 1 50 THR 50 49 49 THR THR A . n A 1 51 CYS 51 50 50 CYS CYS A . n A 1 52 HIS 52 51 51 HIS HIS A . n A 1 53 TRP 53 52 52 TRP TRP A . n A 1 54 CYS 54 53 53 CYS CYS A . n A 1 55 HIS 55 54 54 HIS HIS A . n A 1 56 MET 56 55 55 MET MET A . n A 1 57 MET 57 56 56 MET MET A . n A 1 58 ALA 58 57 57 ALA ALA A . n A 1 59 HIS 59 58 58 HIS HIS A . n A 1 60 GLU 60 59 59 GLU GLU A . n A 1 61 SER 61 60 60 SER SER A . n A 1 62 PHE 62 61 61 PHE PHE A . n A 1 63 GLU 63 62 62 GLU GLU A . n A 1 64 ASP 64 63 63 ASP ASP A . n A 1 65 GLU 65 64 64 GLU GLU A . n A 1 66 GLU 66 65 65 GLU GLU A . n A 1 67 VAL 67 66 66 VAL VAL A . n A 1 68 ALA 68 67 67 ALA ALA A . n A 1 69 GLY 69 68 68 GLY ALA A . n A 1 70 LEU 70 69 69 LEU LEU A . n A 1 71 MET 71 70 70 MET MET A . n A 1 72 ASN 72 71 71 ASN ASN A . n A 1 73 GLU 73 72 72 GLU GLU A . n A 1 74 ALA 74 73 73 ALA ALA A . n A 1 75 PHE 75 74 74 PHE PHE A . n A 1 76 VAL 76 75 75 VAL VAL A . n A 1 77 SER 77 76 76 SER SER A . n A 1 78 ILE 78 77 77 ILE ILE A . n A 1 79 LYS 79 78 78 LYS LYS A . n A 1 80 VAL 80 79 79 VAL VAL A . n A 1 81 ASP 81 80 80 ASP ASP A . n A 1 82 ARG 82 81 81 ARG ARG A . n A 1 83 GLU 83 82 82 GLU GLU A . n A 1 84 GLU 84 83 83 GLU GLU A . n A 1 85 ARG 85 84 84 ARG ARG A . n A 1 86 PRO 86 85 85 PRO PRO A . n A 1 87 ASP 87 86 86 ASP ASP A . n A 1 88 ILE 88 87 87 ILE ILE A . n A 1 89 ASP 89 88 88 ASP ASP A . n A 1 90 ASN 90 89 89 ASN ASN A . n A 1 91 ILE 91 90 90 ILE ILE A . n A 1 92 TYR 92 91 91 TYR TYR A . n A 1 93 MET 93 92 92 MET MET A . n A 1 94 THR 94 93 93 THR THR A . n A 1 95 VAL 95 94 94 VAL VAL A . n A 1 96 CYS 96 95 95 CYS CYS A . n A 1 97 GLN 97 96 96 GLN GLN A . n A 1 98 ILE 98 97 97 ILE ILE A . n A 1 99 ILE 99 98 98 ILE ILE A . n A 1 100 LEU 100 99 99 LEU LEU A . n A 1 101 GLY 101 100 100 GLY GLY A . n A 1 102 ARG 102 101 101 ARG ARG A . n A 1 103 GLY 103 102 102 GLY GLY A . n A 1 104 GLY 104 103 103 GLY GLY A . n A 1 105 TRP 105 104 104 TRP TRP A . n A 1 106 PRO 106 105 105 PRO PRO A . n A 1 107 LEU 107 106 106 LEU LEU A . n A 1 108 ASN 108 107 107 ASN ASN A . n A 1 109 ILE 109 108 108 ILE ILE A . n A 1 110 ILE 110 109 109 ILE ILE A . n A 1 111 MET 111 110 110 MET MET A . n A 1 112 THR 112 111 111 THR THR A . n A 1 113 PRO 113 112 112 PRO PRO A . n A 1 114 GLY 114 113 113 GLY GLY A . n A 1 115 LYS 115 114 114 LYS LYS A . n A 1 116 LYS 116 115 115 LYS LYS A . n A 1 117 PRO 117 116 116 PRO PRO A . n A 1 118 PHE 118 117 117 PHE PHE A . n A 1 119 PHE 119 118 118 PHE PHE A . n A 1 120 ALA 120 119 119 ALA ALA A . n A 1 121 GLY 121 120 120 GLY GLY A . n A 1 122 THR 122 121 121 THR THR A . n A 1 123 TYR 123 122 122 TYR TYR A . n A 1 124 ILE 124 123 123 ILE ILE A . n A 1 125 PRO 125 124 124 PRO PRO A . n A 1 126 LYS 126 125 125 LYS LYS A . n A 1 127 ASN 127 126 126 ASN ASN A . n A 1 128 THR 128 127 127 THR THR A . n A 1 129 ARG 129 128 128 ARG ARG A . n A 1 130 PHE 130 129 129 PHE PHE A . n A 1 131 ASN 131 130 130 ASN ASN A . n A 1 132 GLN 132 131 131 GLN GLN A . n A 1 133 ILE 133 132 132 ILE ILE A . n A 1 134 GLY 134 133 133 GLY GLY A . n A 1 135 MET 135 134 134 MET MET A . n A 1 136 LEU 136 135 135 LEU LEU A . n A 1 137 GLU 137 136 136 GLU GLU A . n A 1 138 LEU 138 137 137 LEU LEU A . n A 1 139 VAL 139 138 138 VAL VAL A . n A 1 140 PRO 140 139 139 PRO PRO A . n A 1 141 ARG 141 140 140 ARG ARG A . n A 1 142 ILE 142 141 141 ILE ILE A . n A 1 143 LYS 143 142 142 LYS LYS A . n A 1 144 GLU 144 143 143 GLU GLU A . n A 1 145 ILE 145 144 144 ILE ILE A . n A 1 146 TRP 146 145 145 TRP TRP A . n A 1 147 GLU 147 146 146 GLU GLU A . n A 1 148 GLN 148 147 147 GLN GLN A . n A 1 149 GLN 149 148 148 GLN GLN A . n A 1 150 HIS 150 149 149 HIS HIS A . n A 1 151 GLU 151 150 150 GLU GLU A . n A 1 152 GLU 152 151 151 GLU GLU A . n A 1 153 VAL 153 152 152 VAL VAL A . n A 1 154 LEU 154 153 153 LEU LEU A . n A 1 155 ASP 155 154 154 ASP ASP A . n A 1 156 SER 156 155 155 SER SER A . n A 1 157 ALA 157 156 156 ALA ALA A . n A 1 158 GLU 158 157 157 GLU GLU A . n A 1 159 LYS 159 158 158 LYS LYS A . n A 1 160 ILE 160 159 159 ILE ILE A . n A 1 161 THR 161 160 160 THR THR A . n A 1 162 SER 162 161 161 SER SER A . n A 1 163 THR 163 162 162 THR THR A . n A 1 164 ILE 164 163 163 ILE ILE A . n A 1 165 GLN 165 164 164 GLN GLN A . n A 1 166 GLU 166 165 165 GLU GLU A . n A 1 167 MET 167 166 166 MET MET A . n A 1 168 ILE 168 167 167 ILE ILE A . n A 1 169 LYS 169 168 168 LYS LYS A . n A 1 170 GLU 170 169 169 GLU GLU A . n A 1 171 SER 171 170 170 SER SER A . n A 1 172 SER 172 171 171 SER SER A . n A 1 173 GLY 173 172 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-10-20 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 20.2650 _pdbx_refine_tls.origin_y 12.1390 _pdbx_refine_tls.origin_z 27.1660 _pdbx_refine_tls.T[1][1] 0.0862 _pdbx_refine_tls.T[2][2] 0.0336 _pdbx_refine_tls.T[3][3] 0.0103 _pdbx_refine_tls.T[1][2] -0.0119 _pdbx_refine_tls.T[1][3] -0.0202 _pdbx_refine_tls.T[2][3] 0.0002 _pdbx_refine_tls.L[1][1] 0.8604 _pdbx_refine_tls.L[2][2] 1.3088 _pdbx_refine_tls.L[3][3] 2.8819 _pdbx_refine_tls.L[1][2] -0.3683 _pdbx_refine_tls.L[1][3] -0.2571 _pdbx_refine_tls.L[2][3] 0.6897 _pdbx_refine_tls.S[1][1] -0.0221 _pdbx_refine_tls.S[1][2] -0.0201 _pdbx_refine_tls.S[1][3] 0.0063 _pdbx_refine_tls.S[2][1] -0.1530 _pdbx_refine_tls.S[2][2] -0.0307 _pdbx_refine_tls.S[2][3] 0.0705 _pdbx_refine_tls.S[3][1] -0.2354 _pdbx_refine_tls.S[3][2] -0.0220 _pdbx_refine_tls.S[3][3] 0.0528 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 30 ? . . . . ? 'X-RAY DIFFRACTION' 2 1 A 31 A 60 ? . . . . ? 'X-RAY DIFFRACTION' 3 1 A 61 A 90 ? . . . . ? 'X-RAY DIFFRACTION' 4 1 A 91 A 120 ? . . . . ? 'X-RAY DIFFRACTION' 5 1 A 121 A 150 ? . . . . ? 'X-RAY DIFFRACTION' 6 1 A 151 A 171 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' . ? 1 HKL-3000 phasing . ? 2 REFMAC refinement 5.5.0054 ? 3 HKL-3000 'data reduction' . ? 4 HKL-3000 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 59 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OH _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 TYR _pdbx_validate_close_contact.auth_seq_id_2 122 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.05 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 121 ? ? -102.93 -137.51 2 1 SER A 170 ? ? -35.49 -39.95 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id 172 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 173 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 173 1 HOH HOH A . B 2 HOH 2 174 2 HOH HOH A . B 2 HOH 3 175 3 HOH HOH A . B 2 HOH 4 176 4 HOH HOH A . B 2 HOH 5 177 5 HOH HOH A . B 2 HOH 6 178 6 HOH HOH A . B 2 HOH 7 179 7 HOH HOH A . B 2 HOH 8 180 8 HOH HOH A . B 2 HOH 9 181 9 HOH HOH A . B 2 HOH 10 182 10 HOH HOH A . B 2 HOH 11 183 11 HOH HOH A . B 2 HOH 12 184 12 HOH HOH A . B 2 HOH 13 185 13 HOH HOH A . B 2 HOH 14 186 14 HOH HOH A . B 2 HOH 15 187 15 HOH HOH A . B 2 HOH 16 188 16 HOH HOH A . B 2 HOH 17 189 17 HOH HOH A . B 2 HOH 18 190 18 HOH HOH A . B 2 HOH 19 191 19 HOH HOH A . B 2 HOH 20 192 20 HOH HOH A . B 2 HOH 21 193 21 HOH HOH A . B 2 HOH 22 194 22 HOH HOH A . B 2 HOH 23 195 23 HOH HOH A . B 2 HOH 24 196 24 HOH HOH A . B 2 HOH 25 197 25 HOH HOH A . B 2 HOH 26 198 26 HOH HOH A . B 2 HOH 27 199 27 HOH HOH A . B 2 HOH 28 200 28 HOH HOH A . B 2 HOH 29 201 29 HOH HOH A . B 2 HOH 30 202 30 HOH HOH A . B 2 HOH 31 203 31 HOH HOH A . B 2 HOH 32 204 32 HOH HOH A . B 2 HOH 33 205 33 HOH HOH A . B 2 HOH 34 206 34 HOH HOH A . B 2 HOH 35 207 35 HOH HOH A . B 2 HOH 36 208 36 HOH HOH A . B 2 HOH 37 209 37 HOH HOH A . B 2 HOH 38 210 38 HOH HOH A . B 2 HOH 39 211 39 HOH HOH A . B 2 HOH 40 212 40 HOH HOH A . B 2 HOH 41 213 41 HOH HOH A . B 2 HOH 42 214 42 HOH HOH A . B 2 HOH 43 215 43 HOH HOH A . B 2 HOH 44 216 44 HOH HOH A . B 2 HOH 45 217 45 HOH HOH A . B 2 HOH 46 218 47 HOH HOH A . B 2 HOH 47 219 48 HOH HOH A . B 2 HOH 48 220 49 HOH HOH A . B 2 HOH 49 221 50 HOH HOH A . B 2 HOH 50 222 51 HOH HOH A . B 2 HOH 51 223 52 HOH HOH A . B 2 HOH 52 224 53 HOH HOH A . B 2 HOH 53 225 54 HOH HOH A . B 2 HOH 54 226 55 HOH HOH A . B 2 HOH 55 227 56 HOH HOH A . B 2 HOH 56 228 57 HOH HOH A . B 2 HOH 57 229 58 HOH HOH A . B 2 HOH 58 230 59 HOH HOH A . B 2 HOH 59 231 60 HOH HOH A . B 2 HOH 60 232 61 HOH HOH A . B 2 HOH 61 233 62 HOH HOH A . B 2 HOH 62 234 63 HOH HOH A . B 2 HOH 63 235 64 HOH HOH A . B 2 HOH 64 236 65 HOH HOH A . B 2 HOH 65 237 66 HOH HOH A . B 2 HOH 66 238 67 HOH HOH A . B 2 HOH 67 239 68 HOH HOH A . B 2 HOH 68 240 69 HOH HOH A . B 2 HOH 69 241 70 HOH HOH A . B 2 HOH 70 242 71 HOH HOH A . B 2 HOH 71 243 72 HOH HOH A . B 2 HOH 72 244 73 HOH HOH A . B 2 HOH 73 245 74 HOH HOH A . #