HEADER CELL ADHESION 24-AUG-09 3IS0 TITLE CRYSTAL STRUCTURE OF FUNCTIONAL REGION OF UAFA FROM STAPHYLOCOCCUS TITLE 2 SAPROPHYTICUS IN THE PRESENCE OF CHOLESTEROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: URO-ADHERENCE FACTOR A; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: FUNCTIONAL REGION, RESIDUES 393-811; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS SAPROPHYTICUS SUBSP. SOURCE 3 SAPROPHYTICUS; SOURCE 4 ORGANISM_TAXID: 342451; SOURCE 5 STRAIN: ATCC 15305; SOURCE 6 GENE: UAFA, SSP0135; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS DEV-IGG FOLD, CELL WALL, HEMAGGLUTININ, PEPTIDOGLYCAN-ANCHOR, KEYWDS 2 SECRETED, VIRULENCE, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR Y.TANAKA,Y.SHOUJI,E.MATSUOKA,M.KURODA,I.TANAKA,M.YAO REVDAT 2 01-NOV-23 3IS0 1 REMARK SEQADV REVDAT 1 08-SEP-10 3IS0 0 JRNL AUTH E.MATSUOKA,Y.TANAKA,M.KURODA,Y.SHOUJI,T.OHTA,I.TANAKA,M.YAO JRNL TITL CRYSTAL STRUCTURE OF FUNCTIONAL REGION OF UAFA FROM JRNL TITL 2 STAPHYLOCOCCUS SAPROPHYTICUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 48168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3686 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3309 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 243 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3074 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 303 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.914 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3149 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4277 ; 1.357 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 390 ; 6.281 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;34.884 ;24.351 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 492 ;13.870 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;22.673 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 478 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2428 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1301 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2190 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 246 ; 0.125 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.219 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.130 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1983 ; 0.851 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3141 ; 1.392 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1322 ; 2.242 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1135 ; 3.507 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 394 X 545 REMARK 3 ORIGIN FOR THE GROUP (A): 36.4065 11.2632 10.3834 REMARK 3 T TENSOR REMARK 3 T11: -0.0442 T22: -0.0126 REMARK 3 T33: -0.0175 T12: -0.0327 REMARK 3 T13: -0.0253 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.2691 L22: 1.8264 REMARK 3 L33: 0.3487 L12: 0.2873 REMARK 3 L13: -0.1338 L23: -0.3522 REMARK 3 S TENSOR REMARK 3 S11: 0.0765 S12: -0.0572 S13: -0.0278 REMARK 3 S21: 0.0450 S22: -0.0729 S23: -0.1098 REMARK 3 S31: -0.0058 S32: -0.0067 S33: -0.0036 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 546 X 693 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0750 -11.1703 14.1954 REMARK 3 T TENSOR REMARK 3 T11: -0.0093 T22: -0.0233 REMARK 3 T33: -0.0295 T12: -0.0921 REMARK 3 T13: 0.0346 T23: -0.0431 REMARK 3 L TENSOR REMARK 3 L11: 0.9099 L22: 1.6626 REMARK 3 L33: 0.5022 L12: 0.2221 REMARK 3 L13: 0.1047 L23: 0.1769 REMARK 3 S TENSOR REMARK 3 S11: 0.0723 S12: -0.0111 S13: 0.1718 REMARK 3 S21: 0.1760 S22: -0.1782 S23: 0.1559 REMARK 3 S31: 0.1447 S32: -0.1058 S33: 0.1059 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 694 X 705 REMARK 3 RESIDUE RANGE : X 717 X 768 REMARK 3 RESIDUE RANGE : X 781 X 796 REMARK 3 RESIDUE RANGE : X 800 X 809 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6119 38.0107 8.2618 REMARK 3 T TENSOR REMARK 3 T11: -0.0092 T22: -0.0279 REMARK 3 T33: -0.0272 T12: 0.0301 REMARK 3 T13: 0.0410 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.8768 L22: 2.1782 REMARK 3 L33: 3.5149 L12: -1.2346 REMARK 3 L13: 0.8320 L23: -1.5875 REMARK 3 S TENSOR REMARK 3 S11: -0.0523 S12: -0.0664 S13: -0.0592 REMARK 3 S21: 0.1421 S22: 0.1526 S23: 0.2586 REMARK 3 S31: -0.0382 S32: -0.2273 S33: -0.1003 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; THE CRYSTAL WAS GROWN IN THE SOLUTION CONTAINING REMARK 3 CHOLESTEROL. AMBIGUOUS BUT SUBSTANTIAL ELECTRON DENSITY PROBABLY REMARK 3 FOR CHOLESTEROL WAS OBSERVED, BUT THE MODEL OF CHOLESTEROL COULD REMARK 3 NOT BE BUILD. SEE THE DETAILS IN THE PAPER. REMARK 4 REMARK 4 3IS0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054792. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51922 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.34200 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3IS1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 180MM TRI-AMMONIUM REMARK 280 CITRATE, 2MM CHOLESTEROL, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.11200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.30800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.11200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 55.30800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH X 217 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X 391 REMARK 465 LYS X 706 REMARK 465 ASN X 707 REMARK 465 ASN X 708 REMARK 465 ASP X 709 REMARK 465 GLY X 710 REMARK 465 VAL X 711 REMARK 465 GLN X 712 REMARK 465 ASN X 713 REMARK 465 ASP X 714 REMARK 465 SER X 715 REMARK 465 ASN X 716 REMARK 465 GLN X 769 REMARK 465 ALA X 770 REMARK 465 ASN X 771 REMARK 465 SER X 772 REMARK 465 THR X 773 REMARK 465 VAL X 774 REMARK 465 ASP X 775 REMARK 465 ASP X 776 REMARK 465 LYS X 777 REMARK 465 ASP X 778 REMARK 465 SER X 779 REMARK 465 ASP X 780 REMARK 465 ALA X 797 REMARK 465 ASP X 798 REMARK 465 ASN X 799 REMARK 465 THR X 810 REMARK 465 THR X 811 REMARK 465 LEU X 812 REMARK 465 GLU X 813 REMARK 465 HIS X 814 REMARK 465 HIS X 815 REMARK 465 HIS X 816 REMARK 465 HIS X 817 REMARK 465 HIS X 818 REMARK 465 HIS X 819 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG X 464 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG X 464 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR X 458 -104.35 -121.96 REMARK 500 ASN X 622 63.20 -107.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL X 1000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3IRP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SAME PROTEIN IN THE ABSENCE OF CHOLESTEROL REMARK 900 IN P 1 21 1 SYMMETRY REMARK 900 RELATED ID: 3IRZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SAME PROTEIN IN THE ABSENCE OF CHOLESTEROL REMARK 900 IN P 21 21 21 SYMMETRY REMARK 900 RELATED ID: 3IS1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SAME PROTEIN, RESIDUES 376-811 DBREF 3IS0 X 393 811 UNP Q4A0V8 UAFA_STAS1 393 811 SEQADV 3IS0 MET X 391 UNP Q4A0V8 INITIATING METHIONINE SEQADV 3IS0 ALA X 392 UNP Q4A0V8 EXPRESSION TAG SEQADV 3IS0 LEU X 812 UNP Q4A0V8 EXPRESSION TAG SEQADV 3IS0 GLU X 813 UNP Q4A0V8 EXPRESSION TAG SEQADV 3IS0 HIS X 814 UNP Q4A0V8 EXPRESSION TAG SEQADV 3IS0 HIS X 815 UNP Q4A0V8 EXPRESSION TAG SEQADV 3IS0 HIS X 816 UNP Q4A0V8 EXPRESSION TAG SEQADV 3IS0 HIS X 817 UNP Q4A0V8 EXPRESSION TAG SEQADV 3IS0 HIS X 818 UNP Q4A0V8 EXPRESSION TAG SEQADV 3IS0 HIS X 819 UNP Q4A0V8 EXPRESSION TAG SEQRES 1 X 429 MET ALA GLN SER GLY ARG ASN VAL ASN HIS LEU VAL PHE SEQRES 2 X 429 ALA ASN THR SER TYR GLU ILE LEU GLY GLY GLY LYS LYS SEQRES 3 X 429 TYR ASN GLN VAL PHE MET THR MET ASP GLY LYS LEU LYS SEQRES 4 X 429 ILE LYS ILE ASP TYR THR VAL ASP ASP SER VAL VAL GLU SEQRES 5 X 429 GLY ASP TYR PHE THR VAL ASP PHE GLY LYS TYR ILE HIS SEQRES 6 X 429 PRO GLY THR SER ARG LYS PRO TYR ARG VAL ASN ASN ILE SEQRES 7 X 429 HIS ASP ALA ASN GLY ARG THR ILE ALA ILE GLY SER TYR SEQRES 8 X 429 ASP SER ALA THR ASN THR ALA LYS TYR THR PHE THR ASN SEQRES 9 X 429 TYR VAL ASP ILE TYR ASN ASN VAL ARG GLY SER PHE SER SEQRES 10 X 429 LEU LEU SER TRP PRO PHE LYS GLU LEU VAL THR THR ASP SEQRES 11 X 429 LYS GLN SER VAL PRO VAL GLY ILE THR VAL ALA GLY GLU SEQRES 12 X 429 ASP TYR THR GLN ASN VAL ILE PHE ASN TYR GLY ASN ARG SEQRES 13 X 429 THR VAL PRO VAL ILE SER ASP ILE ASN TYR LEU THR LYS SEQRES 14 X 429 ASP PHE ALA GLU PHE THR THR TYR ILE ASN GLN ASN ARG SEQRES 15 X 429 ALA PHE ASN THR GLY SER LYS VAL ARG LEU SER GLY GLN SEQRES 16 X 429 GLY PHE LYS PHE THR SER PRO ASP GLU ILE GLU VAL TYR SEQRES 17 X 429 LYS VAL LEU ASN ASN SER GLN PHE ARG ASP SER PHE SER SEQRES 18 X 429 PRO ASP TYR ALA ASN LEU THR GLN VAL ARG ASN PRO LYS SEQRES 19 X 429 ILE ILE ILE ASN SER ASP GLY SER ALA THR VAL ASP LEU SEQRES 20 X 429 GLY ASP ILE GLY THR LEU GLY TYR ILE ILE ARG SER LYS SEQRES 21 X 429 PRO ASN THR LEU PRO ASP PHE SER GLY ILE GLY VAL LEU SEQRES 22 X 429 LYS SER GLU TYR THR PHE THR ASN ASN LYS ASN GLN ARG SEQRES 23 X 429 ASP THR ARG ALA HIS ALA SER SER ILE GLN PHE VAL ARG SEQRES 24 X 429 ALA GLU LEU ALA GLY PHE GLY GLY PHE GLY GLY TYR VAL SEQRES 25 X 429 TRP PHE ASP LYS ASN ASN ASP GLY VAL GLN ASN ASP SER SEQRES 26 X 429 ASN ALA ALA ALA ALA GLY ILE THR VAL ASN LEU LEU ASP SEQRES 27 X 429 PRO THR GLY ILE ARG LEU ALA THR THR THR THR ASP ILE SEQRES 28 X 429 THR GLY HIS TYR ASN PHE ASP ASN LEU THR ASN GLY ASN SEQRES 29 X 429 TYR LEU VAL GLU PHE VAL MET PRO GLU GLY TYR ILE PRO SEQRES 30 X 429 THR GLN ALA ASN SER THR VAL ASP ASP LYS ASP SER ASP SEQRES 31 X 429 VAL VAL PHE GLU ASN GLY ARG TYR ILE ALA HIS VAL THR SEQRES 32 X 429 ILE LYS ASP ALA ASP ASN MET THR ILE ASP ALA GLY LEU SEQRES 33 X 429 VAL SER ASP THR THR LEU GLU HIS HIS HIS HIS HIS HIS HET GOL X1000 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *303(H2 O) HELIX 1 1 VAL X 398 HIS X 400 5 3 HELIX 2 2 GLY X 414 ASN X 418 5 5 HELIX 3 3 ASN X 494 TYR X 499 1 6 HELIX 4 4 SER X 591 ASP X 593 5 3 HELIX 5 5 ASN X 602 PHE X 606 5 5 HELIX 6 6 ASP X 613 LEU X 617 5 5 HELIX 7 7 VAL X 688 ALA X 693 1 6 SHEET 1 A 4 VAL X 402 LEU X 411 0 SHEET 2 A 4 LYS X 427 VAL X 436 -1 O LYS X 429 N GLU X 409 SHEET 3 A 4 ARG X 503 PRO X 512 -1 O PHE X 506 N ILE X 432 SHEET 4 A 4 ILE X 454 PRO X 456 -1 N HIS X 455 O TRP X 511 SHEET 1 B 7 VAL X 420 PHE X 421 0 SHEET 2 B 7 GLU X 533 ASN X 542 1 O ILE X 540 N VAL X 420 SHEET 3 B 7 GLN X 522 VAL X 530 -1 N VAL X 530 O GLU X 533 SHEET 4 B 7 TYR X 445 ASP X 449 -1 N ASP X 449 O THR X 529 SHEET 5 B 7 THR X 487 PHE X 492 -1 O TYR X 490 N PHE X 446 SHEET 6 B 7 THR X 475 ASP X 482 -1 N SER X 480 O LYS X 489 SHEET 7 B 7 ILE X 468 HIS X 469 -1 N ILE X 468 O ILE X 476 SHEET 1 C 5 VAL X 550 LEU X 557 0 SHEET 2 C 5 ALA X 562 ILE X 568 -1 O TYR X 567 N ILE X 551 SHEET 3 C 5 TYR X 645 SER X 649 -1 O TYR X 645 N ILE X 568 SHEET 4 C 5 ILE X 595 LYS X 599 -1 N TYR X 598 O ILE X 646 SHEET 5 C 5 THR X 618 GLN X 619 -1 O THR X 618 N LYS X 599 SHEET 1 D 5 LYS X 624 ILE X 627 0 SHEET 2 D 5 ALA X 633 GLY X 638 -1 O THR X 634 N ILE X 626 SHEET 3 D 5 THR X 576 GLN X 585 -1 N VAL X 580 O VAL X 635 SHEET 4 D 5 ILE X 660 THR X 670 -1 O LYS X 664 N SER X 583 SHEET 5 D 5 ARG X 676 GLN X 686 -1 O ILE X 685 N GLY X 661 SHEET 1 E 2 PHE X 587 LYS X 588 0 SHEET 2 E 2 ASN X 652 THR X 653 -1 O ASN X 652 N LYS X 588 SHEET 1 F 4 HIS X 744 LEU X 750 0 SHEET 2 F 4 GLY X 696 PHE X 704 -1 N GLY X 696 O LEU X 750 SHEET 3 F 4 ALA X 804 SER X 808 1 O LEU X 806 N TRP X 703 SHEET 4 F 4 TYR X 765 PRO X 767 -1 N ILE X 766 O VAL X 807 SHEET 1 G 5 ARG X 733 THR X 738 0 SHEET 2 G 5 THR X 723 LEU X 727 -1 N LEU X 726 O LEU X 734 SHEET 3 G 5 GLY X 753 VAL X 760 -1 O LEU X 756 N LEU X 727 SHEET 4 G 5 ARG X 787 ILE X 794 -1 O ILE X 794 N GLY X 753 SHEET 5 G 5 VAL X 782 GLU X 784 -1 N VAL X 782 O ILE X 789 CISPEP 1 LYS X 461 PRO X 462 0 0.13 SITE 1 AC1 6 PHE X 421 MET X 422 THR X 423 MET X 424 SITE 2 AC1 6 ASN X 542 GLY X 544 CRYST1 100.224 110.616 49.773 90.00 106.41 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009978 0.000000 0.002939 0.00000 SCALE2 0.000000 0.009040 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020945 0.00000